Reep4 (receptor accessory protein 4) - Rat Genome Database

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Gene: Reep4 (receptor accessory protein 4) Chinchilla lanigera
Analyze
Symbol: Reep4
Name: receptor accessory protein 4
RGD ID: 9000017
Description: INVOLVED IN mitotic nuclear membrane reassembly (ortholog); nuclear envelope organization (ortholog); ASSOCIATED WITH Conotruncal Cardiac Defects (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: receptor expression-enhancing protein 4
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540345,627,750 - 45,631,481 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540345,627,750 - 45,631,481 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Reep4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540345,627,750 - 45,631,481 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540345,627,750 - 45,631,481 (-)NCBIChiLan1.0ChiLan1.0
REEP4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38822,138,020 - 22,141,907 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl822,138,020 - 22,141,951 (-)EnsemblGRCh38hg38GRCh38
GRCh37821,995,533 - 21,999,420 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36822,051,478 - 22,055,393 (-)NCBINCBI36Build 36hg18NCBI36
Build 34822,051,477 - 22,055,393NCBI
Celera820,957,454 - 20,961,369 (-)NCBICelera
Cytogenetic Map8p21.3NCBI
HuRef820,537,806 - 20,541,721 (-)NCBIHuRef
CHM1_1822,197,215 - 22,201,111 (-)NCBICHM1_1
T2T-CHM13v2.0822,411,968 - 22,415,855 (-)NCBIT2T-CHM13v2.0
Reep4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391470,782,666 - 70,786,375 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1470,782,691 - 70,786,373 (+)EnsemblGRCm39 Ensembl
GRCm381470,545,223 - 70,548,935 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1470,545,251 - 70,548,933 (+)EnsemblGRCm38mm10GRCm38
MGSCv371470,945,430 - 70,948,739 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361469,280,703 - 69,284,012 (+)NCBIMGSCv36mm8
Celera1468,087,324 - 68,090,655 (+)NCBICelera
Cytogenetic Map14D2NCBI
cM Map1436.32NCBI
Reep4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81552,030,022 - 52,033,229 (+)NCBIGRCr8
mRatBN7.21545,620,317 - 45,623,524 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1545,619,941 - 45,623,526 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1549,738,182 - 49,741,389 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01550,849,687 - 50,852,894 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01547,708,989 - 47,712,196 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01552,235,283 - 52,238,490 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1552,234,563 - 52,238,471 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01555,958,800 - 55,962,007 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41550,946,850 - 50,950,057 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11550,962,629 - 50,965,837 (+)NCBI
Celera1545,298,699 - 45,301,906 (+)NCBICelera
Cytogenetic Map15p11NCBI
REEP4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2740,639,836 - 40,644,281 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1816,365,025 - 16,368,966 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0821,382,943 - 21,386,871 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1818,322,302 - 18,326,232 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl818,322,302 - 18,326,212 (-)Ensemblpanpan1.1panPan2
REEP4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12535,109,210 - 35,113,152 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2535,109,236 - 35,117,048 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2535,698,825 - 35,702,736 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02535,320,600 - 35,324,510 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2535,320,595 - 35,324,527 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12535,266,059 - 35,269,967 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02535,120,613 - 35,124,524 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02535,276,084 - 35,279,995 (+)NCBIUU_Cfam_GSD_1.0
Reep4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494312,608,034 - 12,611,848 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365555,958,352 - 5,962,524 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365555,958,586 - 5,962,472 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
REEP4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl146,411,513 - 6,415,590 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1146,411,510 - 6,415,612 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2146,848,705 - 6,852,809 (-)NCBISscrofa10.2Sscrofa10.2susScr3
REEP4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1820,207,609 - 20,211,509 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl820,207,592 - 20,211,417 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605222,024,572 - 22,028,474 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Reep4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475817,720,700 - 17,724,702 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475817,720,917 - 17,724,741 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000020159   ⟹   ENSCLAP00000019966
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540345,627,750 - 45,631,481 (-)Ensembl
RefSeq Acc Id: XM_005373648   ⟹   XP_005373705
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540345,627,750 - 45,631,481 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013513770   ⟹   XP_013369224
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540345,627,750 - 45,631,481 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005373705 (Get FASTA)   NCBI Sequence Viewer  
  XP_013369224 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000019966
  ENSCLAP00000019966.1
RefSeq Acc Id: XP_005373705   ⟸   XM_005373648
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VWP1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013369224   ⟸   XM_013513770
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000019966   ⟸   ENSCLAT00000020159


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000013685 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000020159 ENTREZGENE
  ENSCLAT00000020159.1 UniProtKB/TrEMBL
InterPro TB2_DP1_HVA22 UniProtKB/TrEMBL
NCBI Gene Reep4 ENTREZGENE
PANTHER PTHR12300 UniProtKB/TrEMBL
  RECEPTOR EXPRESSION-ENHANCING PROTEIN 4 UniProtKB/TrEMBL
Pfam TB2_DP1_HVA22 UniProtKB/TrEMBL
UniProt A0A8C2VWP1 ENTREZGENE, UniProtKB/TrEMBL