Caly (calcyon neuron specific vesicular protein) - Rat Genome Database

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Gene: Caly (calcyon neuron specific vesicular protein) Chinchilla lanigera
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Symbol: Caly
Name: calcyon neuron specific vesicular protein
RGD ID: 9000006
Description: ENCODES a protein that exhibits clathrin light chain binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN anterograde axonal transport (ortholog); clathrin coat assembly (ortholog); positive regulation of clathrin coat assembly (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); attention deficit hyperactivity disorder (ortholog); distal 10q deletion syndrome (ortholog); FOUND IN axon (ortholog); cytoplasmic vesicle (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: neuron-specific vesicular protein calcyon
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547710,983,133 - 10,987,331 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547710,983,602 - 10,993,371 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data
Caly
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547710,983,133 - 10,987,331 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547710,983,602 - 10,993,371 (-)NCBIChiLan1.0ChiLan1.0
CALY
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810133,324,072 - 133,336,896 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl10133,324,072 - 133,336,935 (-)EnsemblGRCh38hg38GRCh38
GRCh3710135,137,576 - 135,150,400 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610134,988,923 - 135,000,401 (-)NCBINCBI36hg18NCBI36
Celera10128,367,054 - 128,378,600 (+)NCBI
Cytogenetic Map10q26.3NCBI
HuRef10128,683,130 - 128,686,340 (-)NCBIHuRef
CHM1_110135,420,111 - 135,432,452 (-)NCBICHM1_1
T2T-CHM13v2.010134,278,597 - 134,292,046 (-)NCBI
Caly
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397139,649,793 - 139,662,485 (-)NCBIGRCm39mm39
GRCm39 Ensembl7139,649,793 - 139,662,461 (-)Ensembl
GRCm387140,069,880 - 140,082,571 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7140,069,880 - 140,082,548 (-)EnsemblGRCm38mm10GRCm38
MGSCv377147,255,779 - 147,268,447 (-)NCBIGRCm37mm9NCBIm37
MGSCv367139,921,207 - 139,933,868 (-)NCBImm8
Celera7139,867,978 - 139,880,626 (-)NCBICelera
Cytogenetic Map7F4NCBI
Caly
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21194,862,671 - 194,873,861 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1194,862,672 - 194,873,551 (-)Ensembl
Rnor_6.01212,537,851 - 212,549,040 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1212,537,848 - 212,549,477 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01219,452,501 - 219,463,690 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41199,869,223 - 199,880,102 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11200,019,215 - 200,030,094 (-)NCBI
Celera1192,539,864 - 192,551,053 (-)NCBICelera
Cytogenetic Map1q41NCBI
CALY
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.110134,236,280 - 134,239,613 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10134,235,262 - 134,239,613 (-)Ensemblpanpan1.1panPan2
CALY
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12840,918,341 - 40,925,161 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2840,918,343 - 40,925,070 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2840,973,435 - 40,980,278 (-)NCBI
ROS_Cfam_1.02841,555,317 - 41,556,483 (-)NCBI
UMICH_Zoey_3.12841,037,406 - 41,044,244 (-)NCBI
UNSW_CanFamBas_1.02841,027,020 - 41,033,840 (-)NCBI
UU_Cfam_GSD_1.02841,429,783 - 41,436,736 (-)NCBI
Caly
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244072136,089,321 - 6,097,309 (+)NCBI
SpeTri2.0NW_00493648619,463,989 - 19,471,976 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CALY
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14141,307,090 - 141,316,292 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114141,307,092 - 141,316,460 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214153,271,921 - 153,275,710 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CALY
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12653,170,933 - 53,182,147 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2653,170,193 - 53,182,136 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605441,306,141 - 41,317,478 (-)NCBIVero_WHO_p1.0
Caly
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473713,358,986 - 13,368,967 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462473713,359,520 - 13,368,948 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000005244   ⟹   ENSCLAP00000005150
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495547710,983,133 - 10,987,331 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000005245   ⟹   ENSCLAP00000005151
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495547710,984,189 - 10,987,331 (-)Ensembl
RefSeq Acc Id: XM_013503059   ⟹   XP_013358513
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495547710,983,602 - 10,993,371 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013358513 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013358513   ⟸   XM_013503059
- Sequence:
RefSeq Acc Id: ENSCLAP00000005150   ⟸   ENSCLAT00000005244
RefSeq Acc Id: ENSCLAP00000005151   ⟸   ENSCLAT00000005245


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003657 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000005150 UniProtKB/TrEMBL
  ENSCLAP00000005151 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000005244 UniProtKB/TrEMBL
  ENSCLAT00000005245 ENTREZGENE, UniProtKB/TrEMBL
InterPro NSG UniProtKB/TrEMBL
NCBI Gene Caly ENTREZGENE
PANTHER PTHR28546 UniProtKB/TrEMBL
Pfam Calcyon UniProtKB/TrEMBL
PIRSF Calcyon UniProtKB/TrEMBL
UniProt A0A8C2UT51_CHILA UniProtKB/TrEMBL
  A0A8C2UW62_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Caly  calcyon neuron specific vesicular protein    calcyon neuron-specific vesicular protein  Symbol and/or name change 5135510 APPROVED