Gene: Spata45 (spermatogenesis associated 45) Chinchilla lanigera |
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Analyze |
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Symbol: |
Spata45 |
Name: |
spermatogenesis associated 45 |
RGD ID: |
8999679 |
Description: |
ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); parathyroid carcinoma (ortholog) |
Type: |
protein-coding
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RefSeq Status: |
MODEL |
Previously known as: |
spermatogenesis-associated protein 45 |
RGD Orthologs |
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Alliance Genes |
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More Info |
more info ...
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More Info |
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Latest Assembly: |
ChiLan1.0 - Chinchilla ChiLan1.0 Assembly |
Position: |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955406 | 4,725,076 - 4,731,285 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955406 | 4,702,976 - 4,731,424 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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Imported Disease Annotations - ClinVar
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References
Genomics
Comparative Map Data
Spata45 (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955406 | 4,725,076 - 4,731,285 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955406 | 4,702,976 - 4,731,424 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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SPATA45 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 1 | 212,830,141 - 212,847,649 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 1 | 212,830,141 - 212,847,649 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 1 | 213,003,483 - 213,020,991 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 1 | 211,070,106 - 211,087,614 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 1 | 186,229,475 - 186,246,986 (-) | NCBI | | Celera | | | Cytogenetic Map | 1 | q32.3 | NCBI | | | | | HuRef | 1 | 183,680,222 - 183,698,104 (-) | NCBI | | HuRef | | | T2T-CHM13v2.0 | 1 | 212,075,115 - 212,092,629 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Spata45 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 1 | 190,768,106 - 190,775,139 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 1 | 190,768,836 - 190,775,139 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 1 | 191,035,909 - 191,042,942 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 1 | 191,036,639 - 191,042,942 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 1 | 192,860,701 - 192,866,820 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 1 | 192,737,437 - 192,743,557 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 1 | 197,961,735 - 197,967,537 (+) | NCBI | | Celera | | | Cytogenetic Map | 1 | H6 | NCBI | | | | | cM Map | 1 | 96.28 | NCBI | | | | |
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Spata45-ps1 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 18 | 18,400,164 - 18,400,542 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 18 | 18,125,485 - 18,125,863 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | Rnor_6.0 | 18 | 19,149,139 - 19,149,530 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_5.0 | 18 | 18,898,899 - 18,899,262 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 18 | 18,681,252 - 18,681,545 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 18 | 18,020,465 - 18,020,856 (-) | NCBI | | Celera | | | Cytogenetic Map | 18 | p12 | NCBI | | | | |
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SPATA45 (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 1 | 36,546,123 - 36,572,943 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 1 | 36,510,194 - 36,536,339 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 1 | 188,399,017 - 188,425,336 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 1 | 193,257,756 - 193,275,400 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 1 | 193,257,857 - 193,263,654 (-) | Ensembl | panpan1.1 | | panPan2 | |
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SPATA45 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 7 | 10,958,793 - 10,970,098 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 7 | 10,958,904 - 10,965,744 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 7 | 10,512,886 - 10,544,782 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 7 | 10,643,569 - 10,675,682 (-) | NCBI | | ROS_Cfam_1.0 | | | UMICH_Zoey_3.1 | 7 | 10,566,412 - 10,598,188 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 7 | 10,667,584 - 10,699,778 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 7 | 10,791,819 - 10,823,940 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Spata45 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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SPATA45 (Chlorocebus sabaeus - green monkey) |
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Expression
Sequence
RefSeq Acc Id: |
ENSCLAT00000012975 ⟹ ENSCLAP00000012827 |
Type: |
CODING |
Position: |
Chinchilla Assembly | Chr | Position (strand) | Source |
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ChiLan1.0 Ensembl | NW_004955406 | 4,725,076 - 4,731,285 (+) | Ensembl |
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RefSeq Acc Id: |
XM_005374735 ⟹ XP_005374792 |
Type: |
CODING |
Position: |
Chinchilla Assembly | Chr | Position (strand) | Source |
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ChiLan1.0 | NW_004955406 | 4,702,976 - 4,731,424 (+) | NCBI |
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Sequence: |
GCTGGGCGGTGCCCAGACACGCCACCTCTCTGCACCTCGTGATATCTCGCCAGAGCGCTGCAGT CCAGCCAGAGGAAGATCGCTTGCAGTCGGACTCGCCCGCCCGCCCCACCCCATGCTCCCTGCGG GCTCGCCCGATTGGGACGTGCTGTGCCTTAGCCGTGCGTGTGGCCCCTGTTCCCCGAAGACCAA CGTCCTTGGTCGTATACCGGGAATCGAACTCACGACCTTGTGCTTGCAAGGCAGGCACTGTGCC GCTGAGCTAAATCCCCAGCCCGAGAGAGAGTCTTGCTTGTGATCATCCTGTGTGAGGCTCCCAG AATGCCACGGTTACAGGGTTCTCTGAGGGAATAAAGCTGACAAGCCGGGTCAGAACATTCCATC ACCATGGTGACCTCCCTGGGGCATATCCACGCTGTGGACTTCCCACAGGCTTCGGGTAGCTGTG TGTGAAAGGGCAGCAAGAAGTAGCATAATGGCAACTACAAACATATCCAGTGAAAAAATTAAAA AACTTGGAGGAAGAAGGCAGGGTCTCCTGAAGGAGATAAATGAAAAACGTGAATCCAACTGCTT AGTAGAAAGAAGCAATCAAGTCAGCTTACTGAGGGTTCAAAAGAGGCATTTCACTGGCACCTAT CAGTCCTTTGCCTGCACCCAGTTTAAAGAGCCTGTTCCTGACAGTGGCCGGAGTTCTTGGGTCC AACTCAGTCTCCTTGTTCATAAGGAGAGAAAGCATTTTCCACCAAAAAATAATGCTATCTTTGG ATAAAGTGCATCTCCAGAAACAAATACATTCTCTGATCCTTCAATGCCGTGTAATTTAGAAATA TTAATTACAAAGGAAGCTAAACAAATTAGTTAAAAAGGCCATAACATGTTTGGTCATATAAAAC AAACATCTTCATTCA
hide sequence
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RefSeq Acc Id: |
XP_005374792 ⟸ XM_005374735 |
- UniProtKB: |
A0A8C2VAU6 (UniProtKB/TrEMBL) |
- Sequence: |
MATTNISSEKIKKLGGRRQGLLKEINEKRESNCLVERSNQVSLLRVQKRHFTGTYQSFACTQFK EPVPDSGRSSWVQLSLLVHKERKHFPPKNNAIFG
hide sequence
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RefSeq Acc Id: |
ENSCLAP00000012827 ⟸ ENSCLAT00000012975 |
Additional Information
Nomenclature History
Date |
Current Symbol |
Current Name |
Previous Symbol |
Previous Name |
Description |
Reference |
Status |
2015-08-25 |
Spata45 |
spermatogenesis associated 45 |
LOC102018798 |
chromosome unknown open reading frame, human C1orf227 |
Symbol and/or name change |
5135510 |
APPROVED |
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