LOC102024786 (vitamin D 25-hydroxylase) - Rat Genome Database

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Gene: LOC102024786 (vitamin D 25-hydroxylase) Chinchilla lanigera
Analyze
Symbol: LOC102024786 (Ensembl: CYP2R1)
Name: vitamin D 25-hydroxylase
RGD ID: 8999097
Description: ENCODES a protein that exhibits D3 vitamins binding (ortholog); heme binding (ortholog); iron ion binding (ortholog); INVOLVED IN calcitriol biosynthetic process from calciol (ortholog); response to cesium ion (ortholog); response to ionizing radiation (ortholog); ASSOCIATED WITH Abdominal Obesity (ortholog); autism spectrum disorder (ortholog); brain infarction (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541429,928,644 - 29,948,484 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541429,929,130 - 29,948,151 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC102024786
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541429,928,644 - 29,948,484 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541429,929,130 - 29,948,151 (-)NCBIChiLan1.0ChiLan1.0
CYP2R1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381114,877,440 - 14,892,443 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1114,877,440 - 14,892,231 (-)EnsemblGRCh38hg38GRCh38
GRCh371114,898,986 - 14,913,989 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361114,856,131 - 14,870,327 (-)NCBINCBI36Build 36hg18NCBI36
Build 341114,856,183 - 14,870,327NCBI
Celera1115,026,672 - 15,040,868 (-)NCBICelera
Cytogenetic Map11p15.2NCBI
HuRef1114,581,996 - 14,596,194 (-)NCBIHuRef
CHM1_11114,898,541 - 14,912,738 (-)NCBICHM1_1
T2T-CHM13v2.01114,973,806 - 14,988,811 (-)NCBIT2T-CHM13v2.0
Cyp2r1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397114,149,358 - 114,162,283 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7114,148,917 - 114,162,207 (-)EnsemblGRCm39 Ensembl
GRCm387114,550,123 - 114,563,048 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7114,549,682 - 114,562,972 (-)EnsemblGRCm38mm10GRCm38
MGSCv377121,693,680 - 121,706,486 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367114,341,347 - 114,354,153 (-)NCBIMGSCv36mm8
Celera7114,506,181 - 114,518,984 (-)NCBICelera
Cytogenetic Map7F1NCBI
cM Map759.79NCBI
Cyp2r1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81178,166,984 - 178,232,191 (-)NCBIGRCr8
mRatBN7.21168,749,302 - 168,798,079 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1168,751,038 - 168,797,759 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1177,105,729 - 177,118,195 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01184,291,785 - 184,304,251 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01177,004,432 - 177,016,901 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01184,060,521 - 184,106,604 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1184,093,920 - 184,106,200 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01191,032,655 - 191,078,746 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41172,593,057 - 172,605,512 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11172,729,161 - 172,741,682 (-)NCBI
Celera1166,625,863 - 166,638,315 (-)NCBICelera
Cytogenetic Map1q34NCBI
CYP2R1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2917,241,939 - 17,263,565 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11117,200,836 - 17,224,415 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01114,960,651 - 14,989,083 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11114,656,939 - 14,671,584 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1114,656,939 - 14,671,584 (-)Ensemblpanpan1.1panPan2
CYP2R1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12137,553,883 - 37,579,744 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2137,552,732 - 37,606,725 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2137,053,097 - 37,079,853 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02138,647,594 - 38,674,701 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2138,649,539 - 38,674,887 (-)EnsemblROS_Cfam_1.0 Ensembl
LOC101972957
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494747,848,045 - 47,866,726 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365283,881,087 - 3,900,302 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365283,881,630 - 3,897,613 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CYP2R1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl244,375,520 - 44,396,334 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1244,375,432 - 44,394,122 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2247,676,732 - 47,695,293 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CYP2R1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1150,030,366 - 50,043,833 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl150,031,218 - 50,047,403 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038147,527,420 - 147,540,720 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101724787
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247666,667,234 - 6,677,992 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247666,667,662 - 6,678,045 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000024742   ⟹   ENSCLAP00000024507
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541429,928,644 - 29,948,484 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000024743   ⟹   ENSCLAP00000024508
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541429,928,644 - 29,948,484 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000024744   ⟹   ENSCLAP00000024509
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541429,931,314 - 29,947,619 (-)Ensembl
RefSeq Acc Id: XM_005380334   ⟹   XP_005380391
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541429,929,130 - 29,948,151 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005380335   ⟹   XP_005380392
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541429,929,130 - 29,943,338 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005380391 (Get FASTA)   NCBI Sequence Viewer  
  XP_005380392 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000024507
  ENSCLAP00000024507.1
  ENSCLAP00000024508.1
  ENSCLAP00000024509.1
Reference Protein Sequences
RefSeq Acc Id: XP_005380391   ⟸   XM_005380334
- Peptide Label: isoform X1
- UniProtKB: A0A8C2W7W5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005380392   ⟸   XM_005380335
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000024508   ⟸   ENSCLAT00000024743
RefSeq Acc Id: ENSCLAP00000024509   ⟸   ENSCLAT00000024744
RefSeq Acc Id: ENSCLAP00000024507   ⟸   ENSCLAT00000024742


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016825 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000024742 ENTREZGENE
  ENSCLAT00000024742.1 UniProtKB/TrEMBL
  ENSCLAT00000024743.1 UniProtKB/TrEMBL
  ENSCLAT00000024744.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.630.10 UniProtKB/TrEMBL
InterPro Cyt_P450 UniProtKB/TrEMBL
  Cyt_P450_E_grp-I UniProtKB/TrEMBL
  Cyt_P450_sf UniProtKB/TrEMBL
NCBI Gene LOC102024786 ENTREZGENE
PANTHER CYTOCHROME P450 508A4-RELATED UniProtKB/TrEMBL
  VITAMIN D 25-HYDROXYLASE UniProtKB/TrEMBL
Pfam p450 UniProtKB/TrEMBL
PRINTS EP450I UniProtKB/TrEMBL
  P450 UniProtKB/TrEMBL
Superfamily-SCOP SSF48264 UniProtKB/TrEMBL
UniProt A0A8C2W368_CHILA UniProtKB/TrEMBL
  A0A8C2W373_CHILA UniProtKB/TrEMBL
  A0A8C2W7W5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 LOC102024786  vitamin D 25-hydroxylase    vitamin D 25-hydroxylase-like  Symbol and/or name change 5135510 APPROVED