Zbtb1 (zinc finger and BTB domain containing 1)

Gene: Zbtb1 (zinc finger and BTB domain containing 1) Chinchilla lanigera

Analyze

Symbol:

Zbtb1

Name:

zinc finger and BTB domain containing 1

RGD ID:

8998460

Description:

ENCODES a protein that exhibits K63-linked polyubiquitin modification-dependent protein binding (ortholog); protein heterodimerization activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN B cell differentiation (ortholog); cellular response to UV (ortholog); chromatin remodeling (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN nuclear body (ortholog); nuclear membrane (ortholog); nucleoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

zinc finger and BTB domain-containing protein 1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955466	5,355,344 - 5,376,240 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955466	5,353,355 - 5,376,240 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

B cell differentiation (ISO)

cellular response to UV (ISO)

chromatin remodeling (ISO)

DNA damage response (ISO)

DNA repair (ISO)

mRNA transcription by RNA polymerase II (ISO)

negative regulation of transcription by RNA polymerase II (ISO)

positive regulation of natural killer cell differentiation (ISO)

positive regulation of pro-T cell differentiation (ISO)

positive regulation of T cell differentiation (ISO)

positive regulation of T cell mediated immunity (ISO)

protein homooligomerization (ISO)

T cell differentiation in thymus (ISO)

thymus development (ISO)

translesion synthesis (ISO)

Cellular Component

nuclear body (ISO)

nuclear membrane (ISO)

nucleoplasm (ISO)

nucleus (ISO)

Molecular Function

K63-linked polyubiquitin modification-dependent protein binding (ISO)

protein binding (ISO)

protein heterodimerization activity (ISO)

protein homodimerization activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Zbtb1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955466	5,355,344 - 5,376,240 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955466	5,353,355 - 5,376,240 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZBTB1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	64,503,716 - 64,533,693 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	64,503,712 - 64,533,690 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	64,971,488 - 65,000,411 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	64,041,174 - 64,070,161 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	64,041,173 - 64,070,161	NCBI
Celera	14	45,029,022 - 45,058,137 (+)	NCBI		Celera
Cytogenetic Map	14	q23.3	NCBI
HuRef	14	45,143,919 - 45,173,044 (+)	NCBI		HuRef
CHM1_1	14	64,910,965 - 64,940,072 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	58,711,422 - 58,741,460 (+)	NCBI		T2T-CHM13v2.0

Zbtb1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	76,416,825 - 76,443,729 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	76,417,040 - 76,443,724 (+)	Ensembl		GRCm39 Ensembl
GRCm38	12	76,370,051 - 76,396,955 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	76,370,266 - 76,396,950 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	77,471,253 - 77,489,734 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	77,289,106 - 77,307,290 (+)	NCBI		MGSCv36	mm8
Celera	12	77,461,603 - 77,479,773 (+)	NCBI		Celera
Cytogenetic Map	12	C3	NCBI
cM Map	12	33.73	NCBI

Zbtb1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	100,832,506 - 100,864,019 (+)	NCBI		GRCr8
mRatBN7.2	6	95,096,838 - 95,125,811 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	95,096,387 - 95,118,996 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	95,502,842 - 95,506,108 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	95,801,356 - 95,804,622 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	95,230,169 - 95,233,435 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	99,401,775 - 99,425,739 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	99,402,360 - 99,424,019 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	108,813,081 - 108,936,519 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	98,981,038 - 98,984,303 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	98,984,493 - 98,987,759 (+)	NCBI
Celera	6	93,534,115 - 93,537,380 (+)	NCBI		Celera
Cytogenetic Map	6	q24	NCBI

ZBTB1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	65,615,544 - 65,645,388 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	64,832,059 - 64,864,228 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	45,085,146 - 45,114,965 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	63,337,806 - 63,366,653 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	63,354,458 - 63,359,403 (+)	Ensembl	panpan1.1		panPan2

ZBTB1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	38,933,721 - 38,959,306 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	38,933,805 - 38,959,306 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	38,625,165 - 38,650,702 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	39,155,081 - 39,180,556 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	39,154,947 - 39,180,556 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	38,776,929 - 38,802,424 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	38,848,165 - 38,873,674 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	39,208,582 - 39,234,081 (+)	NCBI		UU_Cfam_GSD_1.0

Zbtb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	65,954,381 - 65,979,097 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936495	8,212,136 - 8,238,876 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZBTB1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	88,576,008 - 88,602,724 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	88,575,563 - 88,602,726 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	94,956,867 - 94,981,373 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZBTB1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	41,712,721 - 41,738,853 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	41,712,114 - 41,740,654 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	29,889,458 - 29,915,735 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zbtb1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624734	36,479,670 - 36,509,655 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005399121	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005399123	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013521902	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01050878	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDJ01318283	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000004680 ⟹ ENSCLAP00000004594

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955466	5,355,344 - 5,376,240 (-)	Ensembl

RefSeq Acc Id:

ENSCLAT00000004681 ⟹ ENSCLAP00000004595

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955466	5,360,937 - 5,376,240 (-)	Ensembl

RefSeq Acc Id:

XM_005399121 ⟹ XP_005399178

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955466	5,360,937 - 5,376,240 (-)	NCBI

Sequence:

show sequence

TGGCGCGCGCCGGGGCGGGAGGCGGCCGGCCGCCGGGCCGGCTCTTGCGGCGTGCCTTCCCACC
CTCTGCTCGCCGGCACGCACGCTTTCTGTTCAGTGAGAAGCGGTCTCCGCTAGAAGATGGCAAA
GCCCAGCCACAGCAGCTATGTCCTCCAGCAGCTAAACAACCAAAGAGAATGGGGCTTTCTCTGT
GACTGTTGCATTGCAATTGATGACATTTACTTCCAAGCACACAAAGCAGTTCTAGCTGCCTGCA
GCTCCTACTTTAGGATGTTTTTCATGAACCATCAGCACAGTACTGCACAACTGAATCTCAGCAA
CATGAAAATCAGTGCTGAGTGTTTTGATCTCATTTTGCAATTTATGTATTTAGGAAAAATCATG
ACCGCTCCCTCCAGTTTTGAGCAGTTTAAAGTGGCAATGAACTACCTACAGCTGTACAATGTTC
CCGACTGCTTAGAAGACATACAAGATGCAGATTGTTCTAGTTCAAAATGTTCATCTTCTGCTTC
CAGCAAACAGAACACCAAAATGATATTTGGGGTGAGAATGTATGAAGACACTGTGGCCAGAAAC
GGCAGTGAAGCCAACAGGTGGTGTGCAGAGCCGAGTTCAACAGTGAATACCCCTCATAACAGAG
AGCCGGATGAGGAGTCTTTGCCGTTAGGTAACTTTCCTGAGCCACTGTTCGATGTATGCAAAAA
GAGTTCTGTGTCCAAATTATCTGCTCCGAAAGAAAGGGTGTCACGACGCTTCGGACGGAGTTTT
ACTTGTGACAGCTGTGGATTCGGCTTTAGCTGTGAAAAATTATTGGATGAACACGTACTGACCT
GTACTAACAGACATTCATACCAAAACACAAGATCATACCATCGAATAGTAGATATCAGAGACAC
AAAAGACAGTACCATCAAAGCCGAATTTGGTGAGAAGGATTCCTCTAAAACATTTTCTGCGCAG
GCAGACAAATACAGAGGCGACACGAGCCAGGGTCCTGATGATTCCACTTCAACCACGGGAAGCA
GGAAAAGCACGGCAGAGTCTGAACTAGCCGGTGAAGAGAAAAGCAGGGCTGCTGAGAGGAAAAG
AATCATCATTAAGATGGAGCCCGAAGATATTCCTACAGATGAGCTGAAAGACTTTAACATTATT
AAAGTTACTGATAAAGACTGCAATGAGTCCACTGACAACGATGAATTAGAAGATGAACCGGAAG
AGCCATTTTATAGATACTATGTCGAAGAAAACGTTGGCATTAAAAAAAGTGGCAGGAAAACCCT
AAAACCTCGGATGTCCATAAATTCTGAAGAAAGGGGCCCTTTACAAAGCATGAGGCCCCCTAAC
CACAGCAGTCCAGTCCAGGAGGATGGTGACAGTGCCTCCTGTGAGCTGTGCGGGCTCACAATAA
CCGAGGAGGACCTGTCCTCTCACTACCTCGCCAAGCACATTGAGAACATCTGTGCGTGTGGGAA
ATGCGGGCAGATCCTCGTCAAGGGCCGGCAGCTTCAGGAACATGCCCAGAGATGCGGAGAGCCC
CAGGATCTGACCATGAACGGGCTAGGAAATGCCGAGGAGAAGATGGACATGGAAGAAAACCCCG
ATGAACAGTCTGAAATAAGAGATATGTTTGTTGAAATGCTGGATGATTTTAGGGACAGTCATTA
CCAGATAAACAGTATCCAAAAGAAGCAGTTATTTAAACACTCTGCCTGTCCTTTTCGGTGTCCT
AATTGTGGCCAGCGTTTTGAGACTGAAAACCTAGTGGTCGAACATATGTCTAGCTGCCTCGATC
AAGATGTGTTTAAGACCGCCATTATGGAAGAGAATGAAAGAGATCATAGGCGAAAGCATTTTTG
TAATCTTTGTGGAAAAGGATTTTATCAGCGGTGTCACTTAAGGGAACATTATACTGTTCATACT
AAGGAAAAACAGTTTGTTTGTCAGACATGTGGGAAGCAGTTTTTAAGAGAACGTCAGTTGCGTC
TGCACAATGATATGCACAAAGGCATGGCCAGGTATGTCTGTTCCATTTGTGATCAAGGAAACTT
CAGAAAACATGACCATGTACGGCATATGATTTCTCATCTCTCTGCTGGTGAGACGATATGCCAG
GTCTGCTTTCAGATATTCCCAAATAATGAACAGCTGGAGCAGCACATGGATGTTCATCTGTACA
CATGTGGAATATGTGGAGCAAAATTTAATTTGAGGAAAGATATGAGATCACATTATAATGCCAA
GCATTTGAAAAGAACCTAAGTGATTTTCTACTGTATTTGTGTCTAGCTGATAGCAAACAAAACA
CCAAAGCAAAAAGAATATGAGCTATTTAGAAATCAGTTTTATAAGATGAATTGTTGGAAAAAAT
TTCAAGGCCCTTTTATCCTTATTTTTTTCAATTTAGAATCTTAAGTATCTACACTTTAGGTGTG
AAATGCTTATCATTTTTGATGTTTCTTAATAGCATTCTTTGTTTCTAGTTTTCTTTAAAATTCC
TTTTAAATGTAGATAATAAGTTGCTGTTATCTCTTCAATGACTATTAAACTTTAGTTTTTTTAT
CAATAAGGTAATGACTTCACTATTTCTATGTGGGTTTTTTTGGGTTTTTTGGTTTTTTTTTTTT
TTTTTTTTTTGGTTTTTGGTTTTTGGTTTTTTCAAGGTTATCCTGTGAAATCTTAAGCCAGCAT
CATTGGCCATTCCTCTTTAAAGTTTAAAAAAATTTTTTTAAAATTATTGTTTGAAATTACCCCA
TTCAGGTTGAGGGTTTTTTGTCTTTTGTCATTTGAACGGTAGGTTAGCTACTGTTCAATTCTCC
CTTATTATCAGTGAAACTCATATTCTTAAATGGACAAGCTTATTAGGCAAGTTAGGTGCACTGA
ATGTAACCTTTAAGGTTGACATGGGCTCACACTTGGCCTAAAAAGATGGATGGACCTGAGGAAA
TTCCTATAAATGATCATTTCCTATAATTGATAAAATATTATCATTTAATAATCACATTTAAAAC
TTATATTAAGTGTAAATCCCAATGACTTTTCCCTCACTTGTGAAGTTGGTGGGGTTAAGCCATT
TTGCTTTGTGATATTAAATTTAACTATGATAGTTAATTAAAAGACATATTCATTAAAAATATTT
TAATTTAAAAGATTCTGATTTCTAAAGTGTGTTAGTTTATCAATTATTTTTGTTTATAAATAGA
TTTTAATAGCTCTCTAGGAATATCTAAAGGAAAGTGATTTTTCACCTTTAAAATTACATACTTT
TGGTACTTTGAGATTTGAGAAAGCTGCCATGTATATTGATAAATCTAATAAAATAAAGAAATCA
ATTATAAATCTGGTTGTTCTATAAAAGTAGAATGCACAAAAATGTGTTGTGTCTTATACTAAGA
TTTGGAGAAAGTGTGTTGTGGCAAATGGCAATTTATCATGCTTTATTTCTGTAAAGGATATGAA
ACTTGAGGAGTATCAAATAATCACAACATATAAATGGAAACAGTTTATCATTTTTCAACTAAAG
TAGTATTGTTAGTTGTTATTGACATAGGGTCTACATCAATTACATGTGAACTAAAACACTGGCA
AAACTGACCCATCAATAAATAAATATACTGAATAGAATGCC

hide sequence

RefSeq Acc Id:

XM_005399123 ⟹ XP_005399180

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955466	5,353,355 - 5,376,240 (-)	NCBI

Sequence:

show sequence

TGGCGCGCGCCGGGGCGGGAGGCGGCCGGCCGCCGGGCCGGCTCTTGCGGCGTGCCTTCCCACC
CTCTGCTCGCCGGCACGCACGCTTTCTGTTCAGTGAGAAGCGGTCTCCGCTAGAAGATGGCAAA
GCCCAGCCACAGCAGCTATGTCCTCCAGCAGCTAAACAACCAAAGAGAATGGGGCTTTCTCTGT
GACTGTTGCATTGCAATTGATGACATTTACTTCCAAGCACACAAAGCAGTTCTAGCTGCCTGCA
GCTCCTACTTTAGGATGTTTTTCATGAACCATCAGCACAGTACTGCACAACTGAATCTCAGCAA
CATGAAAATCAGTGCTGAGTGTTTTGATCTCATTTTGCAATTTATGTATTTAGGAAAAATCATG
ACCGCTCCCTCCAGTTTTGAGCAGTTTAAAGTGGCAATGAACTACCTACAGCTGTACAATGTTC
CCGACTGCTTAGAAGACATACAAGATGCAGATTGTTCTAGTTCAAAATGTTCATCTTCTGCTTC
CAGCAAACAGAACACCAAAATGATATTTGGGGTGAGAATGTATGAAGACACTGTGGCCAGAAAC
GGCAGTGAAGCCAACAGGTGGTGTGCAGAGCCGAGTTCAACAGTGAATACCCCTCATAACAGAG
AGCCGGATGAGGAGTCTTTGCCGTTAGGTAACTTTCCTGAGCCACTGTTCGATGTATGCAAAAA
GAGTTCTGTGTCCAAATTATCTGCTCCGAAAGAAAGGGTGTCACGACGCTTCGGACGGAGTTTT
ACTTGTGACAGCTGTGGATTCGGCTTTAGCTGTGAAAAATTATTGGATGAACACGTACTGACCT
GTACTAACAGACATTCATACCAAAACACAAGATCATACCATCGAATAGTAGATATCAGAGACAC
AAAAGACAGTACCATCAAAGCCGAATTTGGTGAGAAGGATTCCTCTAAAACATTTTCTGCGCAG
GCAGACAAATACAGAGGCGACACGAGCCAGGGTCCTGATGATTCCACTTCAACCACGGGAAGCA
GGAAAAGCACGGCAGAGTCTGAACTAGCCGGTGAAGAGAAAAGCAGGGCTGCTGAGAGGAAAAG
AATCATCATTAAGATGGAGCCCGAAGATATTCCTACAGATGAGCTGAAAGACTTTAACATTATT
AAAGTTACTGATAAAGACTGCAATGAGTCCACTGACAACGATGAATTAGAAGATGAACCGGAAG
AGCCATTTTATAGATACTATGTCGAAGAAAACGTTGGCATTAAAAAAAGTGGCAGGAAAACCCT
AAAACCTCGGATGTCCATAAATTCTGAAGAAAGGGGCCCTTTACAAAGCATGAGGCCCCCTAAC
CACAGCAGTCCAGTCCAGGAGGATGGTGACAGTGCCTCCTGTGAGCTGTGCGGGCTCACAATAA
CCGAGGAGGACCTGTCCTCTCACTACCTCGCCAAGCACATTGAGAACATCTGTGCGTGTGGGAA
ATGCGGGCAGATCCTCGTCAAGGGCCGGCAGCTTCAGGAACATGCCCAGAGATGCGGAGAGCCC
CAGGATCTGACCATGAACGGGCTAGGAAATGCCGAGGAGAAGATGGACATGGAAGAAAACCCCG
ATGAACAGTCTGAAATAAGAGATATGTTTGTTGAAATGCTGGATGATTTTAGGGACAGTCATTA
CCAGATAAACAGTATCCAAAAGAAGCAGTTATTTAAACACTCTGCCTGTCCTTTTCGGTGTCCT
AATTGTGGCCAGCGTTTTGAGACTGAAAACCTAGTGGTCGAACATATGTCTAGCTGCCTCGATC
AAGATGTGTTTAAGACCGCCATTATGGAAGAGAATGAAAGAGATCATAGGCGAAAGCATTTTTG
TAATCTTTGTGGAAAAGGATTTTATCAGCGGTGTCACTTAAGGGAACATTATACTGTTCATACT
AAGGAAAAACAGTTTGTTTGTCAGACATGTGGGAAGCAGTTTTTAAGAGAACGTCAGTTGCGTC
TGCACAATGATATGCACAAAGGCATGGCCAGTGGTGAAATAGGGCCTTCTAAACCTCTGGAGAA
GTGACAGATCTGAATTTGGAGAGGACATGGGGAAGAATCACTCTTCAACAGATAATCTTTAAGT
GCAAACCCAGGAATAGCAGATCTGAAGTGACACCATCTTTTCTGTCTTCCTGACAAACTTCATC
AACCCCAAAAGTTCCAGTTGCAAAGATCCAAGAAAGCTCGATACAGATCACTTTGGAATCACCG
TGTCGTAACAAAATTGATTCATGGTGACTCTTCTAGCATTTGTGGAAAACCTTCTAGAGAAATG
TAACTGTAAAACTCACATGAAATCAGTGGTTAAAGCTATCTGAAACTTTATATGCTAATTATCT
TCAAGAGTCCTAAAATAAAAGGGCTTGCTAGGCTACTGTAAATATAAAGAGATAATCACATGTC
TTTATAAACATGTATAATTCTAAGCTTAAAATAACCAGAATTACAGCTTATATATTACAAAATT
AGGTAATTTAAAGAGTTACACCCTAAAATCTGTAGGTTAGAGTCTCATTAAAAAGAATGGTACC
AAGAAAAAAAATTTAAGGCCAATATTTTAACAAGATAATCTAGTTATTCTTCACGGTAATGTAA
CGCCTATCCTCTTTCTTGTTTGTGAATAATACCAGTCACATGTTTGACTTCATATTAATGAAGC
TCCTTTTTAAGATTGTTAACTTCGGACCGGGGATATAGCTCAGCGGTACAAGTGCCTGCCGGGC
AAGCAGAAGGTCCTGAGTTCAATTTCTGGTACAAAAAAAAAAAAAAAAATTGTAAAAAAAGACT
TAACCTGAAGGAAAAGCACAAAAGTATTATTTTATTAGTGGTAGGTTTTCACAAATCACAGACA
TTATTTTCTTCTGACCTTAACCTAGTAGGCAGAATTAATTTTGTTCAGCATTTATTCTCAATAT
AATGTATAATGCCATGCTATCAGCTTCAAATTTCACAATACAATTAGACTAAGTAAACTTTGAT
GGTTAGCATGTTTTAAAAACCTCTCATGGAGAAACTGAATATTTTGTGAGTCTTAACCTGGTTA
CAAATGCTTTGCTATGTGCATACATGCACATGCGTGCACATATTTCTTAAGGATATGACTTATG
ACCATATTATTTCCTTATTGTGAATATACTTGTACTGTACTTTTATCTTTGGTTAACTATGTAC
CAAATTATTATTTTGTTTTTTTGTGCACTATCAAGATGTTATATATTTTTAGAAATGGTTTATT
TTTACTCTTATCTCTAAAAATGTTTTTACTAAGGAGTTTCACAAAGAGACCTAACATAAAGTAT
ACTTCATAGTATATTGCAGAAGTGAAGTCACTTAAAAACCCTGGCTGTAAGGTTGGATAATAAC
TTGAATATTCACTCTAATAATTAGGCTAGATGAAAATCAAATAGTTCATTACAGTGGAATAACA
GATATGGGGGGAAGGAGGAGAGAGATTCACTGACGAGTGCAAATATATATGAAACCGCTTTAAG
AGAAACAAGTTTAACAAAGTCTCAAACAGCATCAAGAAAACACTAGGTAAAGTTGTTTGGGAAC
ATGAAGATGCATTTAGAACTACAAGCTTCTAAAAATAAGTAGGAAACAAAAGATAAAAGAATAT
TACCAGGCCAGGGAAGCAGCTCAGCAGCATAACACCTGCCTGGCAAGTGTGAGGTCATAAATTC
AATTCCCAGTACCAAAAAAAGAAAAAGAATATTACCAGTAATTAAATGTGCCTGATAAATATAG
AAATGACTCAGAAAGTAATTTTGATTGATGAAATTTTTTATTGAATGAGATTTCTAAAGAAAAA
TGGCTTAAATTTTGACTGTACTAACTGCAAGTGTAATGAACTATGATAATTATAAATGGTATAA
ATGCATTCAATGATGTGGTTATTTTCTGTATATTAGTATAAAATGGAATTTTTGGATTACATAA
AGTACTTTTGTTACATTTTAAAATCCATTGCTTTTACCTAATAAAAAGTCCTCCTCTATGTTCA
GAAGTTAAA

hide sequence

RefSeq Acc Id:

XM_013521902 ⟹ XP_013377356

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955466	5,360,937 - 5,375,561 (-)	NCBI

Sequence:

show sequence

TGTTTGGGATCGCTGGCTGAGTCTCCGCTAGAAGATGGCAAAGCCCAGCCACAGCAGCTATGTC
CTCCAGCAGCTAAACAACCAAAGAGAATGGGGCTTTCTCTGTGACTGTTGCATTGCAATTGATG
ACATTTACTTCCAAGCACACAAAGCAGTTCTAGCTGCCTGCAGCTCCTACTTTAGGATGTTTTT
CATGAACCATCAGCACAGTACTGCACAACTGAATCTCAGCAACATGAAAATCAGTGCTGAGTGT
TTTGATCTCATTTTGCAATTTATGTATTTAGGAAAAATCATGACCGCTCCCTCCAGTTTTGAGC
AGTTTAAAGTGGCAATGAACTACCTACAGCTGTACAATGTTCCCGACTGCTTAGAAGACATACA
AGATGCAGATTGTTCTAGTTCAAAATGTTCATCTTCTGCTTCCAGCAAACAGAACACCAAAATG
ATATTTGGGGTGAGAATGTATGAAGACACTGTGGCCAGAAACGGCAGTGAAGCCAACAGGTGGT
GTGCAGAGCCGAGTTCAACAGTGAATACCCCTCATAACAGAGAGCCGGATGAGGAGTCTTTGCC
GTTAGGTAACTTTCCTGAGCCACTGTTCGATGTATGCAAAAAGAGTTCTGTGTCCAAATTATCT
GCTCCGAAAGAAAGGGTGTCACGACGCTTCGGACGGAGTTTTACTTGTGACAGCTGTGGATTCG
GCTTTAGCTGTGAAAAATTATTGGATGAACACGTACTGACCTGTACTAACAGACATTCATACCA
AAACACAAGATCATACCATCGAATAGTAGATATCAGAGACACAAAAGACAGTACCATCAAAGCC
GAATTTGGTGAGAAGGATTCCTCTAAAACATTTTCTGCGCAGGCAGACAAATACAGAGGCGACA
CGAGCCAGGGTCCTGATGATTCCACTTCAACCACGGGAAGCAGGAAAAGCACGGCAGAGTCTGA
ACTAGCCGGTGAAGAGAAAAGCAGGGCTGCTGAGAGGAAAAGAATCATCATTAAGATGGAGCCC
GAAGATATTCCTACAGATGAGCTGAAAGACTTTAACATTATTAAAGTTACTGATAAAGACTGCA
ATGAGTCCACTGACAACGATGAATTAGAAGATGAACCGGAAGAGCCATTTTATAGATACTATGT
CGAAGAAAACGTTGGCATTAAAAAAAGTGGCAGGAAAACCCTAAAACCTCGGATGTCCATAAAT
TCTGAAGAAAGGGGCCCTTTACAAAGCATGAGGCCCCCTAACCACAGCAGTCCAGTCCAGGAGG
ATGGTGACAGTGCCTCCTGTGAGCTGTGCGGGCTCACAATAACCGAGGAGGACCTGTCCTCTCA
CTACCTCGCCAAGCACATTGAGAACATCTGTGCGTGTGGGAAATGCGGGCAGATCCTCGTCAAG
GGCCGGCAGCTTCAGGAACATGCCCAGAGATGCGGAGAGCCCCAGGATCTGACCATGAACGGGC
TAGGAAATGCCGAGGAGAAGATGGACATGGAAGAAAACCCCGATGAACAGTCTGAAATAAGAGA
TATGTTTGTTGAAATGCTGGATGATTTTAGGGACAGTCATTACCAGATAAACAGTATCCAAAAG
AAGCAGTTATTTAAACACTCTGCCTGTCCTTTTCGGTGTCCTAATTGTGGCCAGCGTTTTGAGA
CTGAAAACCTAGTGGTCGAACATATGTCTAGCTGCCTCGATCAAGATGTGTTTAAGACCGCCAT
TATGGAAGAGAATGAAAGAGATCATAGGCGAAAGCATTTTTGTAATCTTTGTGGAAAAGGATTT
TATCAGCGGTGTCACTTAAGGGAACATTATACTGTTCATACTAAGGAAAAACAGTTTGTTTGTC
AGACATGTGGGAAGCAGTTTTTAAGAGAACGTCAGTTGCGTCTGCACAATGATATGCACAAAGG
CATGGCCAGGTATGTCTGTTCCATTTGTGATCAAGGAAACTTCAGAAAACATGACCATGTACGG
CATATGATTTCTCATCTCTCTGCTGGTGAGACGATATGCCAGGTCTGCTTTCAGATATTCCCAA
ATAATGAACAGCTGGAGCAGCACATGGATGTTCATCTGTACACATGTGGAATATGTGGAGCAAA
ATTTAATTTGAGGAAAGATATGAGATCACATTATAATGCCAAGCATTTGAAAAGAACCTAAGTG
ATTTTCTACTGTATTTGTGTCTAGCTGATAGCAAACAAAACACCAAAGCAAAAAGAATATGAGC
TATTTAGAAATCAGTTTTATAAGATGAATTGTTGGAAAAAATTTCAAGGCCCTTTTATCCTTAT
TTTTTTCAATTTAGAATCTTAAGTATCTACACTTTAGGTGTGAAATGCTTATCATTTTTGATGT
TTCTTAATAGCATTCTTTGTTTCTAGTTTTCTTTAAAATTCCTTTTAAATGTAGATAATAAGTT
GCTGTTATCTCTTCAATGACTATTAAACTTTAGTTTTTTTATCAATAAGGTAATGACTTCACTA
TTTCTATGTGGGTTTTTTTGGGTTTTTTGGTTTTTTTTTTTTTTTTTTTTTTGGTTTTTGGTTT
TTGGTTTTTTCAAGGTTATCCTGTGAAATCTTAAGCCAGCATCATTGGCCATTCCTCTTTAAAG
TTTAAAAAAATTTTTTTAAAATTATTGTTTGAAATTACCCCATTCAGGTTGAGGGTTTTTTGTC
TTTTGTCATTTGAACGGTAGGTTAGCTACTGTTCAATTCTCCCTTATTATCAGTGAAACTCATA
TTCTTAAATGGACAAGCTTATTAGGCAAGTTAGGTGCACTGAATGTAACCTTTAAGGTTGACAT
GGGCTCACACTTGGCCTAAAAAGATGGATGGACCTGAGGAAATTCCTATAAATGATCATTTCCT
ATAATTGATAAAATATTATCATTTAATAATCACATTTAAAACTTATATTAAGTGTAAATCCCAA
TGACTTTTCCCTCACTTGTGAAGTTGGTGGGGTTAAGCCATTTTGCTTTGTGATATTAAATTTA
ACTATGATAGTTAATTAAAAGACATATTCATTAAAAATATTTTAATTTAAAAGATTCTGATTTC
TAAAGTGTGTTAGTTTATCAATTATTTTTGTTTATAAATAGATTTTAATAGCTCTCTAGGAATA
TCTAAAGGAAAGTGATTTTTCACCTTTAAAATTACATACTTTTGGTACTTTGAGATTTGAGAAA
GCTGCCATGTATATTGATAAATCTAATAAAATAAAGAAATCAATTATAAATCTGGTTGTTCTAT
AAAAGTAGAATGCACAAAAATGTGTTGTGTCTTATACTAAGATTTGGAGAAAGTGTGTTGTGGC
AAATGGCAATTTATCATGCTTTATTTCTGTAAAGGATATGAAACTTGAGGAGTATCAAATAATC
ACAACATATAAATGGAAACAGTTTATCATTTTTCAACTAAAGTAGTATTGTTAGTTGTTATTGA
CATAGGGTCTACATCAATTACATGTGAACTAAAACACTGGCAAAACTGACCCATCAATAAATAA
ATATACTGAATAGAATGCC

hide sequence

Protein Sequences


Protein RefSeqs	XP_005399178	(Get FASTA)	NCBI Sequence Viewer
	XP_005399180	(Get FASTA)	NCBI Sequence Viewer
	XP_013377356	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000004594
	ENSCLAP00000004594.1
	ENSCLAP00000004595
	ENSCLAP00000004595.1

RefSeq Acc Id:	XP_005399180 ⟸ XM_005399123
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2YK49 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAKPSHSSYVLQQLNNQREWGFLCDCCIAIDDIYFQAHKAVLAACSSYFRMFFMNHQHSTAQLN LSNMKISAECFDLILQFMYLGKIMTAPSSFEQFKVAMNYLQLYNVPDCLEDIQDADCSSSKCSS SASSKQNTKMIFGVRMYEDTVARNGSEANRWCAEPSSTVNTPHNREPDEESLPLGNFPEPLFDV CKKSSVSKLSAPKERVSRRFGRSFTCDSCGFGFSCEKLLDEHVLTCTNRHSYQNTRSYHRIVDI RDTKDSTIKAEFGEKDSSKTFSAQADKYRGDTSQGPDDSTSTTGSRKSTAESELAGEEKSRAAE RKRIIIKMEPEDIPTDELKDFNIIKVTDKDCNESTDNDELEDEPEEPFYRYYVEENVGIKKSGR KTLKPRMSINSEERGPLQSMRPPNHSSPVQEDGDSASCELCGLTITEEDLSSHYLAKHIENICA CGKCGQILVKGRQLQEHAQRCGEPQDLTMNGLGNAEEKMDMEENPDEQSEIRDMFVEMLDDFRD SHYQINSIQKKQLFKHSACPFRCPNCGQRFETENLVVEHMSSCLDQDVFKTAIMEENERDHRRK HFCNLCGKGFYQRCHLREHYTVHTKEKQFVCQTCGKQFLRERQLRLHNDMHKGMASGEIGPSKP LEK hide sequence

RefSeq Acc Id:	XP_005399178 ⟸ XM_005399121
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2YK56 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAKPSHSSYVLQQLNNQREWGFLCDCCIAIDDIYFQAHKAVLAACSSYFRMFFMNHQHSTAQLN LSNMKISAECFDLILQFMYLGKIMTAPSSFEQFKVAMNYLQLYNVPDCLEDIQDADCSSSKCSS SASSKQNTKMIFGVRMYEDTVARNGSEANRWCAEPSSTVNTPHNREPDEESLPLGNFPEPLFDV CKKSSVSKLSAPKERVSRRFGRSFTCDSCGFGFSCEKLLDEHVLTCTNRHSYQNTRSYHRIVDI RDTKDSTIKAEFGEKDSSKTFSAQADKYRGDTSQGPDDSTSTTGSRKSTAESELAGEEKSRAAE RKRIIIKMEPEDIPTDELKDFNIIKVTDKDCNESTDNDELEDEPEEPFYRYYVEENVGIKKSGR KTLKPRMSINSEERGPLQSMRPPNHSSPVQEDGDSASCELCGLTITEEDLSSHYLAKHIENICA CGKCGQILVKGRQLQEHAQRCGEPQDLTMNGLGNAEEKMDMEENPDEQSEIRDMFVEMLDDFRD SHYQINSIQKKQLFKHSACPFRCPNCGQRFETENLVVEHMSSCLDQDVFKTAIMEENERDHRRK HFCNLCGKGFYQRCHLREHYTVHTKEKQFVCQTCGKQFLRERQLRLHNDMHKGMARYVCSICDQ GNFRKHDHVRHMISHLSAGETICQVCFQIFPNNEQLEQHMDVHLYTCGICGAKFNLRKDMRSHY NAKHLKRT hide sequence

RefSeq Acc Id:	XP_013377356 ⟸ XM_013521902
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2YK56 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAKPSHSSYVLQQLNNQREWGFLCDCCIAIDDIYFQAHKAVLAACSSYFRMFFMNHQHSTAQLN LSNMKISAECFDLILQFMYLGKIMTAPSSFEQFKVAMNYLQLYNVPDCLEDIQDADCSSSKCSS SASSKQNTKMIFGVRMYEDTVARNGSEANRWCAEPSSTVNTPHNREPDEESLPLGNFPEPLFDV CKKSSVSKLSAPKERVSRRFGRSFTCDSCGFGFSCEKLLDEHVLTCTNRHSYQNTRSYHRIVDI RDTKDSTIKAEFGEKDSSKTFSAQADKYRGDTSQGPDDSTSTTGSRKSTAESELAGEEKSRAAE RKRIIIKMEPEDIPTDELKDFNIIKVTDKDCNESTDNDELEDEPEEPFYRYYVEENVGIKKSGR KTLKPRMSINSEERGPLQSMRPPNHSSPVQEDGDSASCELCGLTITEEDLSSHYLAKHIENICA CGKCGQILVKGRQLQEHAQRCGEPQDLTMNGLGNAEEKMDMEENPDEQSEIRDMFVEMLDDFRD SHYQINSIQKKQLFKHSACPFRCPNCGQRFETENLVVEHMSSCLDQDVFKTAIMEENERDHRRK HFCNLCGKGFYQRCHLREHYTVHTKEKQFVCQTCGKQFLRERQLRLHNDMHKGMARYVCSICDQ GNFRKHDHVRHMISHLSAGETICQVCFQIFPNNEQLEQHMDVHLYTCGICGAKFNLRKDMRSHY NAKHLKRT hide sequence

RefSeq Acc Id:

ENSCLAP00000004594 ⟸ ENSCLAT00000004680

RefSeq Acc Id:

ENSCLAP00000004595 ⟸ ENSCLAT00000004681

Protein Domains

BTB C2H2-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000003270	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000004680	ENTREZGENE
	ENSCLAT00000004680.1	UniProtKB/TrEMBL
	ENSCLAT00000004681	ENTREZGENE
	ENSCLAT00000004681.1	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	BTB/POZ_dom	UniProtKB/TrEMBL
	SKP1/BTB/POZ_sf	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
NCBI Gene	Zbtb1	ENTREZGENE
PANTHER	GM08392P	UniProtKB/TrEMBL
	ZINC FINGER AND BTB DOMAIN CONTAINING 1	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
Pfam	BTB	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
PROSITE	BTB	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
SMART	BTB	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54695	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A0A8C2YK49	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2YK56	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar