Ptx3 (pentraxin 3) - Rat Genome Database

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Gene: Ptx3 (pentraxin 3) Chinchilla lanigera
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Symbol: Ptx3
Name: pentraxin 3
RGD ID: 8998142
Description: ENCODES a protein that exhibits (1->3)-beta-D-glucan binding (ortholog); complement component C1q complex binding (ortholog); identical protein binding (ortholog); INVOLVED IN extracellular matrix organization (ortholog); innate immune response (ortholog); negative regulation by host of viral exo-alpha-sialidase activity (ortholog); ASSOCIATED WITH Arsenic Poisoning (ortholog); cystic fibrosis (ortholog); Diabetic Foot (ortholog); FOUND IN extracellular matrix (ortholog); extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: pentraxin 3, long; pentraxin-related protein PTX3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554488,366,925 - 8,372,411 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554488,366,795 - 8,373,010 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References


Genomics

Comparative Map Data
Ptx3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554488,366,925 - 8,372,411 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554488,366,795 - 8,373,010 (+)NCBIChiLan1.0ChiLan1.0
PTX3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3157,436,850 - 157,443,633 (+)EnsemblGRCh38hg38GRCh38
GRCh383157,436,850 - 157,443,633 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh373157,154,639 - 157,161,422 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363158,637,301 - 158,644,071 (+)NCBINCBI36hg18NCBI36
Build 343158,637,308 - 158,644,078NCBI
Celera3155,578,255 - 155,585,092 (+)NCBI
Cytogenetic Map3q25.32NCBI
HuRef3154,550,694 - 154,557,531 (+)NCBIHuRef
CHM1_13157,117,566 - 157,124,403 (+)NCBICHM1_1
Ptx3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39366,127,308 - 66,133,227 (+)NCBIGRCm39mm39
GRCm39 Ensembl366,127,331 - 66,133,226 (+)Ensembl
GRCm38366,219,887 - 66,225,806 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl366,219,910 - 66,225,805 (+)EnsemblGRCm38mm10GRCm38
MGSCv37366,023,809 - 66,029,728 (+)NCBIGRCm37mm9NCBIm37
MGSCv36366,307,812 - 66,313,734 (+)NCBImm8
Celera366,363,920 - 66,369,839 (+)NCBICelera
Cytogenetic Map3E1NCBI
cM Map330.25NCBI
Ptx3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22150,487,513 - 150,493,323 (+)NCBI
Rnor_6.0 Ensembl2158,097,843 - 158,103,653 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02158,097,843 - 158,103,653 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02177,457,263 - 177,463,073 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42156,089,917 - 156,095,726 (+)NCBIRGSC3.4rn4RGSC3.4
Celera2144,894,946 - 144,900,755 (+)NCBICelera
Cytogenetic Map2q31NCBI
PTX3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13162,537,440 - 162,544,263 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3162,537,577 - 162,543,652 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03154,485,470 - 154,492,293 (+)NCBIMhudiblu_PPA_v0panPan3
PTX3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12350,952,835 - 50,958,607 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2350,952,885 - 50,958,167 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2350,825,322 - 50,831,079 (+)NCBI
ROS_Cfam_1.02351,586,874 - 51,592,673 (+)NCBI
UMICH_Zoey_3.12351,169,291 - 51,175,068 (+)NCBI
UNSW_CanFamBas_1.02351,222,224 - 51,228,028 (+)NCBI
UU_Cfam_GSD_1.02351,507,584 - 51,513,394 (+)NCBI
Ptx3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560285,424,779 - 85,430,719 (-)NCBI
SpeTri2.0NW_0049365194,303,549 - 4,309,143 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTX3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1397,273,594 - 97,279,569 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11397,273,594 - 97,279,570 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213105,440,917 - 105,446,892 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PTX3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11533,320,592 - 33,327,236 (-)NCBI
ChlSab1.1 Ensembl1533,321,208 - 33,327,268 (-)Ensembl
Vero_WHO_p1.0NW_0236660415,897,822 - 5,904,486 (-)NCBI
Ptx3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473035,125,536 - 35,131,645 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000005121   ⟹   ENSCLAP00000005029
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554488,366,925 - 8,372,411 (+)Ensembl
RefSeq Acc Id: XM_013518628   ⟹   XP_013374082
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554488,366,795 - 8,373,010 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013374082 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013374082   ⟸   XM_013518628
- Sequence:
RefSeq Acc Id: ENSCLAP00000005029   ⟸   ENSCLAT00000005121


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003570 Ensembl
NCBI Gene Ptx3 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Ptx3  pentraxin 3    pentraxin 3, long  Symbol and/or name change 5135510 APPROVED