Cyth2 (cytohesin 2) - Rat Genome Database

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Gene: Cyth2 (cytohesin 2) Chinchilla lanigera
Analyze
Symbol: Cyth2
Name: cytohesin 2
RGD ID: 8997946
Description: ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); inositol 1,4,5 trisphosphate binding (ortholog); INVOLVED IN dendrite morphogenesis (ortholog); endosome organization (ortholog); negative regulation of dendrite development (ortholog); PARTICIPATES IN Arf family mediated signaling pathway; phosphatidylinositol 3-kinase class I signaling pathway; FOUND IN bicellular tight junction (ortholog); BLOC-1 complex (ortholog); cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: cytohesin-2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555592,014,740 - 2,021,891 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555592,014,740 - 2,021,234 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Cyth2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555592,014,740 - 2,021,891 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555592,014,740 - 2,021,234 (-)NCBIChiLan1.0ChiLan1.0
CYTH2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1948,469,208 - 48,482,314 (+)EnsemblGRCh38hg38GRCh38
GRCh381948,469,341 - 48,482,314 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371948,972,626 - 48,985,571 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361953,664,424 - 53,674,457 (+)NCBINCBI36hg18NCBI36
Build 341953,664,423 - 53,674,457NCBI
Celera1945,837,706 - 45,850,811 (+)NCBI
Cytogenetic Map19q13.33NCBI
HuRef1945,352,658 - 45,365,766 (+)NCBIHuRef
CHM1_11948,974,285 - 48,987,392 (+)NCBICHM1_1
Cyth2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39745,456,058 - 45,463,857 (-)NCBIGRCm39mm39
GRCm39 Ensembl745,456,061 - 45,464,005 (-)Ensembl
GRCm38745,806,637 - 45,814,322 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,806,637 - 45,814,581 (-)EnsemblGRCm38mm10GRCm38
MGSCv37753,062,007 - 53,069,686 (-)NCBIGRCm37mm9NCBIm37
MGSCv36745,674,679 - 45,682,328 (-)NCBImm8
Celera741,270,769 - 41,278,444 (-)NCBICelera
Cytogenetic Map7B3NCBI
Cyth2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2196,284,252 - 96,291,090 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl196,284,252 - 96,291,092 (-)Ensembl
Rnor_6.01101,796,349 - 101,803,407 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1101,796,349 - 101,803,200 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01102,875,334 - 102,882,766 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4196,284,658 - 96,291,450 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1196,362,775 - 96,369,565 (-)NCBI
Celera190,536,747 - 90,543,596 (-)NCBICelera
Cytogenetic Map1q22NCBI
CYTH2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11954,063,497 - 54,072,676 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1954,063,560 - 54,073,017 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01945,471,277 - 45,481,350 (+)NCBIMhudiblu_PPA_v0panPan3
CYTH2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11107,794,560 - 107,803,345 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1107,794,560 - 107,803,016 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1107,316,439 - 107,324,675 (-)NCBI
ROS_Cfam_1.01108,319,539 - 108,327,772 (-)NCBI
UMICH_Zoey_3.11107,985,663 - 107,993,894 (-)NCBI
UNSW_CanFamBas_1.01107,632,979 - 107,641,213 (-)NCBI
UU_Cfam_GSD_1.01108,468,837 - 108,477,074 (-)NCBI
Cyth2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934920,948,752 - 20,957,005 (+)NCBI
SpeTri2.0NW_0049366642,566,744 - 2,575,201 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CYTH2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl653,868,408 - 53,878,856 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1653,869,475 - 53,878,856 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2649,539,911 - 49,549,295 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CYTH2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1641,730,710 - 41,741,002 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl641,730,589 - 41,744,435 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607321,515,518 - 21,525,831 (+)NCBIVero_WHO_p1.0
Cyth2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248325,335,168 - 5,342,574 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000008286   ⟹   ENSCLAP00000008160
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555592,014,740 - 2,021,248 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000008287   ⟹   ENSCLAP00000008161
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555592,014,918 - 2,021,891 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000008288   ⟹   ENSCLAP00000008162
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555592,019,629 - 2,021,851 (-)Ensembl
RefSeq Acc Id: XM_013509039   ⟹   XP_013364493
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555592,014,740 - 2,021,225 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013509040   ⟹   XP_013364494
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555592,015,698 - 2,021,234 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013364493 (Get FASTA)   NCBI Sequence Viewer  
  XP_013364494 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013364493   ⟸   XM_013509039
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013364494   ⟸   XM_013509040
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000008160   ⟸   ENSCLAT00000008286
RefSeq Acc Id: ENSCLAP00000008161   ⟸   ENSCLAT00000008287
RefSeq Acc Id: ENSCLAP00000008162   ⟸   ENSCLAT00000008288


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000005723 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000008160 ENTREZGENE
Ensembl Transcript ENSCLAT00000008286 ENTREZGENE
NCBI Gene Cyth2 ENTREZGENE