Ap4m1 (adaptor related protein complex 4 subunit mu 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Ap4m1 (adaptor related protein complex 4 subunit mu 1) Chinchilla lanigera
Analyze
Symbol: Ap4m1
Name: adaptor related protein complex 4 subunit mu 1
RGD ID: 8996948
Description: ENCODES a protein that exhibits protein domain specific binding (ortholog); INVOLVED IN autophagosome assembly (ortholog); Golgi to endosome transport (ortholog); Golgi to lysosome transport (ortholog); ASSOCIATED WITH Alazami-Yuan Syndrome (ortholog); Developmental Disabilities (ortholog); genetic disease (ortholog); FOUND IN AP-4 adaptor complex (ortholog); early endosome (ortholog); trans-Golgi network (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: adaptor related protein complex 4 mu 1 subunit; adaptor-related protein complex 4, mu 1 subunit; AP-4 complex subunit mu-1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955573759,222 - 763,222 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955573759,222 - 763,222 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ap4m1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955573759,222 - 763,222 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955573759,222 - 763,222 (-)NCBIChiLan1.0ChiLan1.0
AP4M1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387100,100,794 - 100,109,039 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7100,100,898 - 100,110,345 (+)EnsemblGRCh38hg38GRCh38
GRCh37799,699,266 - 99,706,662 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36799,537,066 - 99,542,739 (+)NCBINCBI36Build 36hg18NCBI36
Build 34799,343,830 - 99,349,453NCBI
Celera794,433,789 - 94,439,462 (+)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef794,334,781 - 94,340,455 (+)NCBIHuRef
CHM1_1799,629,287 - 99,634,960 (+)NCBICHM1_1
T2T-CHM13v2.07101,340,729 - 101,348,885 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2799,059,249 - 99,064,921 (+)NCBI
Ap4m1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395138,170,283 - 138,178,691 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5138,170,264 - 138,178,691 (+)EnsemblGRCm39 Ensembl
GRCm385138,172,021 - 138,180,429 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5138,172,002 - 138,180,429 (+)EnsemblGRCm38mm10GRCm38
MGSCv375138,613,249 - 138,619,915 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365138,401,809 - 138,408,471 (+)NCBIMGSCv36mm8
Celera5135,151,353 - 135,157,995 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map576.98NCBI
Ap4m1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81222,163,474 - 22,171,734 (+)NCBIGRCr8
mRatBN7.21217,049,766 - 17,055,954 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1217,049,777 - 17,058,026 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1217,873,224 - 17,879,102 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01218,496,968 - 18,502,846 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01217,550,374 - 17,556,252 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01219,314,222 - 19,320,339 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1219,314,251 - 19,320,142 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01221,371,852 - 21,377,968 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41217,614,882 - 17,620,773 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11217,604,001 - 17,610,295 (+)NCBI
Celera1218,980,013 - 18,985,904 (+)NCBICelera
Cytogenetic Map12q11NCBI
AP4M1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26118,020,512 - 118,028,432 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17166,285,144 - 166,293,064 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0792,137,085 - 92,142,756 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17105,570,205 - 105,575,971 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7105,570,205 - 105,575,971 (+)Ensemblpanpan1.1panPan2
AP4M1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.169,488,496 - 9,492,703 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl69,486,372 - 9,492,243 (-)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.069,425,495 - 9,429,591 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl69,423,773 - 9,429,399 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.169,274,807 - 9,278,909 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.069,255,130 - 9,259,226 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.069,434,718 - 9,438,823 (-)NCBIUU_Cfam_GSD_1.0
Ap4m1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344133,784,566 - 133,790,213 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936543246,335 - 254,975 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936543246,335 - 250,278 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AP4M1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl38,013,747 - 8,017,700 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.138,013,701 - 8,017,701 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
AP4M1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12812,971,007 - 12,976,914 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2812,971,297 - 12,976,779 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660703,296,018 - 3,301,894 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ap4m1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474016,883,828 - 16,887,685 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474016,883,725 - 16,887,678 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000002214   ⟹   ENSCLAP00000002168
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955573759,222 - 763,222 (-)Ensembl
RefSeq Acc Id: XM_005413751   ⟹   XP_005413808
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955573759,222 - 763,222 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013509465   ⟹   XP_013364919
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955573759,222 - 763,188 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005413808 (Get FASTA)   NCBI Sequence Viewer  
  XP_013364919 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000002168
  ENSCLAP00000002168.1
RefSeq Acc Id: XP_005413808   ⟸   XM_005413751
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UM63 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013364919   ⟸   XM_013509465
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000002168   ⟸   ENSCLAT00000002214
Protein Domains
MHD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000001567 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000002214 ENTREZGENE
  ENSCLAT00000002214.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.450.60 UniProtKB/TrEMBL
  Mu homology domain, subdomain B UniProtKB/TrEMBL
InterPro AP2_Mu_C_sf UniProtKB/TrEMBL
  AP_mu_sigma_su UniProtKB/TrEMBL
  Clathrin_mu UniProtKB/TrEMBL
  Clathrin_mu_CS UniProtKB/TrEMBL
  Longin-like_dom_sf UniProtKB/TrEMBL
  MHD UniProtKB/TrEMBL
NCBI Gene Ap4m1 ENTREZGENE
PANTHER AP COMPLEX SUBUNIT MU UniProtKB/TrEMBL
  AP-4 COMPLEX SUBUNIT MU-1 UniProtKB/TrEMBL
Pfam Adap_comp_sub UniProtKB/TrEMBL
  Clat_adaptor_s UniProtKB/TrEMBL
PIRSF Clathrin_mu UniProtKB/TrEMBL
PRINTS CLATHRINADPT UniProtKB/TrEMBL
PROSITE CLAT_ADAPTOR_M_2 UniProtKB/TrEMBL
  MHD UniProtKB/TrEMBL
Superfamily-SCOP SSF49447 UniProtKB/TrEMBL
  SSF64356 UniProtKB/TrEMBL
UniProt A0A8C2UM63 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-01 Ap4m1  adaptor related protein complex 4 subunit mu 1    adaptor related protein complex 4 mu 1 subunit  Symbol and/or name change 5135510 APPROVED
2016-08-03 Ap4m1  adaptor related protein complex 4 mu 1 subunit    adaptor-related protein complex 4, mu 1 subunit  Symbol and/or name change 5135510 APPROVED