Snrnp27 (small nuclear ribonucleoprotein U4/U6.U5 subunit 27) - Rat Genome Database

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Gene: Snrnp27 (small nuclear ribonucleoprotein U4/U6.U5 subunit 27) Chinchilla lanigera
Analyze
Symbol: Snrnp27
Name: small nuclear ribonucleoprotein U4/U6.U5 subunit 27
RGD ID: 8996456
Description: ASSOCIATED WITH atrial fibrillation (ortholog); genetic disease (ortholog); FOUND IN U4/U6 x U5 tri-snRNP complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: small nuclear ribonucleoprotein 27kDa (U4/U6.U5)
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542415,238,793 - 15,252,244 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542415,243,190 - 15,251,831 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Snrnp27
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542415,238,793 - 15,252,244 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542415,243,190 - 15,251,831 (-)NCBIChiLan1.0ChiLan1.0
SNRNP27
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38269,893,956 - 69,905,236 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl269,893,956 - 69,905,575 (+)EnsemblGRCh38hg38GRCh38
GRCh37270,121,088 - 70,132,368 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36269,974,594 - 69,985,853 (+)NCBINCBI36Build 36hg18NCBI36
Celera269,972,266 - 69,983,527 (+)NCBICelera
Cytogenetic Map2p13.3NCBI
HuRef269,857,032 - 69,868,320 (+)NCBIHuRef
CHM1_1270,050,725 - 70,062,018 (+)NCBICHM1_1
T2T-CHM13v2.0269,906,240 - 69,916,976 (+)NCBIT2T-CHM13v2.0
Snrnp27
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39686,652,151 - 86,661,473 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl686,652,133 - 86,661,504 (-)EnsemblGRCm39 Ensembl
GRCm38686,675,169 - 86,684,491 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl686,675,151 - 86,684,522 (-)EnsemblGRCm38mm10GRCm38
MGSCv37686,625,163 - 86,634,485 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36686,640,803 - 86,650,125 (-)NCBIMGSCv36mm8
Celera688,612,797 - 88,622,344 (-)NCBICelera
Cytogenetic Map6D1NCBI
cM Map637.75NCBI
Snrnp27
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84120,681,054 - 120,691,343 (-)NCBIGRCr8
mRatBN7.24119,123,676 - 119,133,234 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4119,121,877 - 119,133,234 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4124,596,192 - 124,605,756 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04120,370,925 - 120,380,489 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04118,995,188 - 119,004,752 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04118,478,075 - 118,487,633 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4118,478,075 - 118,534,280 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04183,048,089 - 183,057,647 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44120,828,680 - 120,838,238 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14121,073,178 - 121,082,871 (-)NCBI
Celera4108,093,738 - 108,103,296 (-)NCBICelera
Cytogenetic Map4q34NCBI
SNRNP27
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21256,505,707 - 56,517,088 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A56,510,222 - 56,521,034 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A69,936,640 - 69,947,971 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A71,054,108 - 71,065,343 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A71,054,108 - 71,065,343 (+)Ensemblpanpan1.1panPan2
SNRNP27
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11068,531,541 - 68,541,233 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1068,531,253 - 68,541,225 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1068,421,961 - 68,431,690 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01069,552,964 - 69,562,649 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1069,552,690 - 69,562,641 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11069,272,390 - 69,282,067 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01069,535,320 - 69,545,033 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01069,832,953 - 69,842,642 (+)NCBIUU_Cfam_GSD_1.0
Snrnp27
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629214,452,473 - 14,465,211 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649114,106,066 - 14,118,856 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649114,106,124 - 14,118,823 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNRNP27
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl372,556,367 - 72,565,948 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1372,556,127 - 72,566,023 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2375,950,669 - 75,960,564 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SNRNP27
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11437,217,877 - 37,228,441 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1437,218,122 - 37,228,407 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604574,769,599 - 74,787,584 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snrnp27
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247623,490,190 - 3,503,566 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247623,494,301 - 3,503,456 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000019199   ⟹   ENSCLAP00000019014
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542415,238,793 - 15,252,244 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000019200   ⟹   ENSCLAP00000019015
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542415,243,541 - 15,250,863 (-)Ensembl
RefSeq Acc Id: XM_005385637   ⟹   XP_005385694
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542415,243,190 - 15,251,810 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013514749   ⟹   XP_013370203
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542415,243,190 - 15,250,565 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013514750   ⟹   XP_013370204
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542415,243,190 - 15,250,565 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001234249
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542415,243,190 - 15,251,809 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001234250
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542415,243,190 - 15,251,831 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005385694 (Get FASTA)   NCBI Sequence Viewer  
  XP_013370203 (Get FASTA)   NCBI Sequence Viewer  
  XP_013370204 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000019014
  ENSCLAP00000019014.1
  ENSCLAP00000019015
  ENSCLAP00000019015.1
Reference Protein Sequences
RefSeq Acc Id: XP_005385694   ⟸   XM_005385637
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013370204   ⟸   XM_013514750
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013370203   ⟸   XM_013514749
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000019014   ⟸   ENSCLAT00000019199
RefSeq Acc Id: ENSCLAP00000019015   ⟸   ENSCLAT00000019200
Protein Domains
U4/U6.U5 small nuclear ribonucleoprotein 27kDa


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000013023 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000019199 ENTREZGENE
  ENSCLAT00000019199.1 UniProtKB/TrEMBL
  ENSCLAT00000019200 ENTREZGENE
  ENSCLAT00000019200.1 UniProtKB/TrEMBL
InterPro SNRNP27 UniProtKB/TrEMBL
NCBI Gene Snrnp27 ENTREZGENE
PANTHER U4/U6.U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 27 KDA PROTEIN UniProtKB/TrEMBL
  U4/U6.U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 27 KDA PROTEIN UniProtKB/TrEMBL
Pfam SNRNP27 UniProtKB/TrEMBL
UniProt A0A8C2VQF5_CHILA UniProtKB/TrEMBL
  A0A8C2YS03_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Snrnp27  small nuclear ribonucleoprotein U4/U6.U5 subunit 27    small nuclear ribonucleoprotein 27kDa (U4/U6.U5)  Symbol and/or name change 5135510 APPROVED