Znf408 (zinc finger protein 408) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Znf408 (zinc finger protein 408) Chinchilla lanigera
Analyze
Symbol: Znf408
Name: zinc finger protein 408
RGD ID: 8995528
Description: ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH congenital disorder of glycosylation type IIc (ortholog); exudative vitreoretinopathy (ortholog); exudative vitreoretinopathy 1 (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554221,373,694 - 1,377,688 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Znf408
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554221,373,694 - 1,377,688 (-)NCBIChiLan1.0ChiLan1.0
ZNF408
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381146,701,031 - 46,705,912 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1146,701,030 - 46,705,912 (+)EnsemblGRCh38hg38GRCh38
GRCh371146,722,581 - 46,727,462 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361146,678,944 - 46,684,037 (+)NCBINCBI36Build 36hg18NCBI36
Build 341146,678,943 - 46,684,037NCBI
Celera1146,870,748 - 46,875,897 (+)NCBICelera
Cytogenetic Map11p11.2NCBI
HuRef1146,428,356 - 46,433,505 (+)NCBIHuRef
CHM1_11146,720,727 - 46,725,876 (+)NCBICHM1_1
T2T-CHM13v2.01146,857,047 - 46,861,916 (+)NCBIT2T-CHM13v2.0
Zfp408
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39291,473,101 - 91,480,372 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl291,474,014 - 91,480,136 (-)EnsemblGRCm39 Ensembl
GRCm38291,642,756 - 91,650,051 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl291,643,669 - 91,649,791 (-)EnsemblGRCm38mm10GRCm38
MGSCv37291,483,845 - 91,489,948 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36291,444,509 - 91,450,630 (-)NCBIMGSCv36mm8
Celera293,033,201 - 93,039,338 (-)NCBICelera
Cytogenetic Map2E1NCBI
cM Map250.63NCBI
Znf408
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8398,071,210 - 98,077,075 (-)NCBIGRCr8
mRatBN7.2377,615,595 - 77,621,325 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0380,549,102 - 80,555,186 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0387,248,337 - 87,253,997 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4376,025,925 - 76,029,792 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera376,820,747 - 76,826,831 (-)NCBICelera
Cytogenetic Map3q24NCBI
ZNF408
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2948,906,001 - 48,911,189 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11148,925,805 - 48,930,960 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01146,651,421 - 46,656,514 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11147,209,922 - 47,215,070 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1147,209,922 - 47,215,070 (+)Ensemblpanpan1.1panPan2
ZNF408
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11842,808,820 - 42,813,422 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1842,808,874 - 42,813,276 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1841,537,548 - 41,542,223 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01843,464,083 - 43,469,596 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1843,464,932 - 43,469,385 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11842,949,121 - 42,954,632 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01842,505,620 - 42,510,240 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01843,234,035 - 43,239,549 (-)NCBIUU_Cfam_GSD_1.0
Znf408
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494720,283,174 - 20,289,249 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365622,393,751 - 2,400,650 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365622,394,368 - 2,400,924 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF408
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl215,826,654 - 15,834,246 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1215,829,489 - 15,834,549 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2217,180,517 - 17,185,354 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Znf408
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247671,900,429 - 1,905,612 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: XM_013513827   ⟹   XP_013369281
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554221,373,694 - 1,377,688 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013369281 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_013369281   ⟸   XM_013513827
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Znf408 ENTREZGENE