Sanbr (SANT and BTB domain regulator of CSR) - Rat Genome Database

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Gene: Sanbr (SANT and BTB domain regulator of CSR) Chinchilla lanigera
Analyze
Symbol: Sanbr
Name: SANT and BTB domain regulator of CSR (Ensembl:KIAA1841 ortholog)
RGD ID: 8994491
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN isotype switching (ortholog); ASSOCIATED WITH genetic disease (ortholog); peroxisome biogenesis disorder 11A (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Kiaa1841; KIAA1841 ortholog; uncharacterized protein KIAA1841 homolog
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542422,728,802 - 22,785,374 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542422,728,802 - 22,785,374 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data
Sanbr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542422,728,802 - 22,785,374 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542422,728,802 - 22,785,374 (-)NCBIChiLan1.0ChiLan1.0
SANBR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38261,065,871 - 61,138,032 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl261,065,871 - 61,138,034 (+)EnsemblGRCh38hg38GRCh38
GRCh37261,293,006 - 61,365,167 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36261,146,867 - 61,218,673 (+)NCBINCBI36Build 36hg18NCBI36
Celera261,136,600 - 61,208,762 (+)NCBICelera
Cytogenetic Map2p15NCBI
HuRef261,033,863 - 61,106,176 (+)NCBIHuRef
CHM1_1261,223,592 - 61,295,700 (+)NCBICHM1_1
T2T-CHM13v2.0261,071,714 - 61,143,876 (+)NCBIT2T-CHM13v2.0
Sanbr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391123,514,949 - 23,596,409 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1123,514,961 - 23,583,631 (-)EnsemblGRCm39 Ensembl
GRCm381123,564,949 - 23,633,681 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1123,564,961 - 23,633,639 (-)EnsemblGRCm38mm10GRCm38
MGSCv371123,473,776 - 23,533,631 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361123,473,781 - 23,533,621 (-)NCBIMGSCv36mm8
Celera1125,695,626 - 25,755,514 (-)NCBICelera
Cytogenetic Map11A3.2NCBI
cM Map1114.33NCBI
Sanbr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814101,717,619 - 101,787,092 (-)NCBIGRCr8
mRatBN7.21497,516,652 - 97,585,955 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1497,516,413 - 97,581,346 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx14101,848,795 - 101,917,792 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014103,093,152 - 103,162,145 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01499,564,718 - 99,633,716 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.014108,305,343 - 108,376,618 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14108,305,418 - 108,372,157 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014105,141,200 - 105,211,616 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414104,466,526 - 104,536,016 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.114104,495,362 - 104,555,339 (-)NCBI
Celera1496,493,622 - 96,561,785 (-)NCBICelera
Cytogenetic Map14q22NCBI
SANBR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21265,237,578 - 65,311,361 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A65,241,518 - 65,315,312 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A61,157,551 - 61,229,955 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A62,298,792 - 62,369,817 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A62,299,121 - 62,369,817 (+)Ensemblpanpan1.1panPan2
SANBR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11061,143,971 - 61,195,058 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1061,123,655 - 61,193,241 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1061,030,572 - 61,084,924 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01062,149,335 - 62,203,748 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1062,149,396 - 62,203,592 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11061,852,129 - 61,906,665 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01062,136,889 - 62,190,918 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01062,432,281 - 62,486,639 (+)NCBIUU_Cfam_GSD_1.0
Sanbr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629221,940,781 - 21,992,755 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364916,578,484 - 6,630,513 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364916,578,538 - 6,629,610 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SANBR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl380,675,008 - 80,746,252 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1380,675,008 - 80,746,306 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2384,698,819 - 84,727,009 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SANBR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11445,865,697 - 45,920,403 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1445,864,838 - 45,920,782 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604565,876,997 - 65,935,631 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sanbr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624833771,627 - 825,815 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624833772,761 - 828,302 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000013290   ⟹   ENSCLAP00000013139
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542422,728,802 - 22,785,374 (-)Ensembl
RefSeq Acc Id: XM_013514723   ⟹   XP_013370177
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542422,728,802 - 22,785,374 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013370177 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000013139
  ENSCLAP00000013139.1
Reference Protein Sequences
RefSeq Acc Id: XP_013370177   ⟸   XM_013514723
- UniProtKB: A0A8C2VBJ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000013139   ⟸   ENSCLAT00000013290
Protein Domains
SANT and BTB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009068 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000013290 ENTREZGENE
  ENSCLAT00000013290.1 UniProtKB/TrEMBL
InterPro SANBR-like UniProtKB/TrEMBL
  SANBR_BTB UniProtKB/TrEMBL
  SANT/Myb UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
NCBI Gene Kiaa1841 ENTREZGENE
PANTHER DUF3342 DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  PTHR20946 UniProtKB/TrEMBL
Pfam DUF3342 UniProtKB/TrEMBL
UniProt A0A8C2VBJ6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-30 Sanbr  SANT and BTB domain regulator of CSR  Kiaa1841  KIAA1841 ortholog  Symbol and/or name change 5135510 APPROVED