Pknox1 (PBX/knotted 1 homeobox 1) - Rat Genome Database

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Gene: Pknox1 (PBX/knotted 1 homeobox 1) Chinchilla lanigera
Analyze
Symbol: Pknox1
Name: PBX/knotted 1 homeobox 1
RGD ID: 8993276
Description: ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN angiogenesis (ortholog); camera-type eye development (ortholog); erythrocyte differentiation (ortholog); ASSOCIATED WITH cataract 9 multiple types (ortholog); developmental and epileptic encephalopathy 30 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); transcription regulator complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: homeobox protein PKNOX1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540738,948,200 - 38,982,984 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540738,949,060 - 38,982,984 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Pknox1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540738,948,200 - 38,982,984 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540738,949,060 - 38,982,984 (-)NCBIChiLan1.0ChiLan1.0
PKNOX1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382142,974,562 - 43,033,931 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2142,974,510 - 43,033,931 (+)EnsemblGRCh38hg38GRCh38
GRCh372144,394,672 - 44,454,041 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362143,267,712 - 43,326,757 (+)NCBINCBI36Build 36hg18NCBI36
Build 342143,267,711 - 43,326,757NCBI
Celera2129,545,263 - 29,606,363 (+)NCBICelera
Cytogenetic Map21q22.3NCBI
HuRef2129,842,641 - 29,872,199 (+)NCBIHuRef
CHM1_12143,955,570 - 44,014,595 (+)NCBICHM1_1
T2T-CHM13v2.02141,363,445 - 41,424,980 (+)NCBIT2T-CHM13v2.0
Pknox1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391731,783,697 - 31,826,665 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1731,783,708 - 31,826,667 (+)EnsemblGRCm39 Ensembl
GRCm381731,564,722 - 31,607,693 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1731,564,734 - 31,607,693 (+)EnsemblGRCm38mm10GRCm38
MGSCv371731,701,718 - 31,744,638 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361731,312,406 - 31,336,394 (+)NCBIMGSCv36mm8
Celera1732,499,119 - 32,525,010 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1716.78NCBI
Pknox1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8209,664,120 - 9,706,328 (+)NCBIGRCr8
mRatBN7.2209,662,866 - 9,705,030 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl209,662,899 - 9,703,727 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2010,380,973 - 10,402,956 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0209,742,151 - 9,764,138 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02010,211,818 - 10,233,814 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02010,331,608 - 10,358,922 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2010,334,308 - 10,358,922 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02012,519,709 - 12,546,894 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42010,019,509 - 10,041,680 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12010,019,738 - 10,041,906 (+)NCBI
Celera2011,194,122 - 11,216,038 (+)NCBICelera
Cytogenetic Map20p12NCBI
PKNOX1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22239,031,280 - 39,090,577 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12133,883,591 - 33,943,402 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02129,282,883 - 29,341,998 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12142,621,832 - 42,650,818 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2142,622,065 - 42,647,329 (+)Ensemblpanpan1.1panPan2
PKNOX1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13137,189,753 - 37,223,844 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3137,192,992 - 37,220,926 (+)NCBICanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3136,312,330 - 36,373,694 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03136,740,626 - 36,763,495 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13136,571,573 - 36,633,643 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03136,551,944 - 36,613,396 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03137,048,036 - 37,110,892 (+)NCBIUU_Cfam_GSD_1.0
Pknox1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497136,410,806 - 36,451,774 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365001,015,954 - 1,055,215 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365001,018,414 - 1,055,221 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PKNOX1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13206,167,156 - 206,195,468 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113206,159,264 - 206,195,471 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PKNOX1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1286,857,155 - 86,882,365 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl286,856,632 - 86,881,550 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605414,762,697 - 14,870,613 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pknox1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474527,696,185 - 27,754,138 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474527,696,257 - 27,754,162 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000013593   ⟹   ENSCLAP00000013440
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540738,948,200 - 38,982,984 (-)Ensembl
RefSeq Acc Id: XM_005375800   ⟹   XP_005375857
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540738,949,060 - 38,982,984 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005375801   ⟹   XP_005375858
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540738,949,060 - 38,982,984 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005375802   ⟹   XP_005375859
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540738,949,060 - 38,982,984 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005375857 (Get FASTA)   NCBI Sequence Viewer  
  XP_005375858 (Get FASTA)   NCBI Sequence Viewer  
  XP_005375859 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000013440
  ENSCLAP00000013440.1
Reference Protein Sequences
RefSeq Acc Id: XP_005375858   ⟸   XM_005375801
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005375857   ⟸   XM_005375800
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VC83 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005375859   ⟸   XM_005375802
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSCLAP00000013440   ⟸   ENSCLAT00000013593
Protein Domains
Homeobox


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009292 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000013593 ENTREZGENE
  ENSCLAT00000013593.1 UniProtKB/TrEMBL
Gene3D-CATH Homeodomain-like UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  Homeobox_KN_domain UniProtKB/TrEMBL
  PKNOX/Meis_N UniProtKB/TrEMBL
NCBI Gene Pknox1 ENTREZGENE
PANTHER HOMEOBOX PROTEIN PKNOX1 UniProtKB/TrEMBL
  HOMEOBOX PROTEIN TRANSCRIPTION FACTORS UniProtKB/TrEMBL
Pfam Homeobox_KN UniProtKB/TrEMBL
  Meis_PKNOX_N UniProtKB/TrEMBL
PROSITE HOMEOBOX_2 UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt A0A8C2VC83 ENTREZGENE, UniProtKB/TrEMBL