Dnajc17 (DnaJ heat shock protein family (Hsp40) member C17)

Gene: Dnajc17 (DnaJ heat shock protein family (Hsp40) member C17) Chinchilla lanigera

Analyze

Symbol:

Dnajc17

Name:

DnaJ heat shock protein family (Hsp40) member C17

Description:

ENCODES a protein that exhibits RNA binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); toxin transport (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Also known as:

DnaJ (Hsp40) homolog, subfamily C, member 17; dnaJ homolog subfamily C member 17

Orthologs:

Homo sapiens (human) : DNAJC17 (DnaJ heat shock protein family (Hsp40) member C17) HGNC Alliance
Mus musculus (house mouse) : Dnajc17 (DnaJ heat shock protein family (Hsp40) member C17) MGI Alliance
Rattus norvegicus (Norway rat) : Dnajc17 (DnaJ heat shock protein family (Hsp40) member C17) Alliance
Pan paniscus (bonobo/pygmy chimpanzee) : DNAJC17 (DnaJ heat shock protein family (Hsp40) member C17)
Canis lupus familiaris (dog) : DNAJC17 (DnaJ heat shock protein family (Hsp40) member C17)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Dnajc17 (DnaJ heat shock protein family (Hsp40) member C17)
Sus scrofa (pig) : DNAJC17 (DnaJ heat shock protein family (Hsp40) member C17)

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955416	7,620,553 - 7,672,344 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation (Toggle Annotation Detail/Summary View)

Gene Ontology Annotations

References - curated

Genomics

Comparative Map Data

Dnajc17
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955416	7,620,553 - 7,672,344 (-)	NCBI	ChiLan1.0	ChiLan1.0

DNAJC17
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	40,765,161 - 40,807,477 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	15	41,060,067 - 41,099,676 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	38,847,363 - 38,886,947 (-)	NCBI	NCBI36		hg18	NCBI36
Celera	15	17,827,960 - 17,867,572 (-)	NCBI
Cytogenetic Map	15	q15.1	NCBI
HuRef	15	17,908,212 - 17,947,793 (-)	NCBI		HuRef
CHM1_1	15	41,180,092 - 41,219,690 (-)	NCBI		CHM1_1

Dnajc17
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm38	2	119,172,500 - 119,208,838 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
MGSCv37	2	118,998,236 - 119,034,531 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	2	118,863,941 - 118,900,215 (-)	NCBI			mm8
Celera	2	120,323,130 - 120,358,917 (-)	NCBI		Celera
Cytogenetic Map	2	E5	NCBI
cM Map	2	59.97	NCBI

Dnajc17
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	3	110,980,074 - 111,013,602 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	110,980,074 - 111,013,589 (-)	Ensembl
Rnor_5.0	3	117,530,712 - 117,564,237 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	105,687,465 - 105,721,953 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	3	105,583,892 - 105,618,363 (-)	NCBI
Celera	3	105,075,234 - 105,108,964 (-)	NCBI		Celera
Cytogenetic Map	3	q35	NCBI

DNAJC17
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	15	37,960,965 - 37,999,674 (-)	NCBI	panpan1.1	PanPan1.1
Bonobo Cytomap	15		NCBI

DNAJC17
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	7,904,519 - 7,945,222 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog Cytomap	30		NCBI

Dnajc17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936471	4,177,636 - 4,200,873 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DNAJC17
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	1	130,516,725 - 130,559,233 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	145,674,935 - 145,717,606 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3
Pig Cytomap	1		NCBI

Expression

Sequence

Nucleotide Sequences

RefSeq Transcripts	XM_005381263	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013512569	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01016995	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01016996	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01016997	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01016998	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01016999	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01017000	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01158979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

XM_005381263 ⟹ XP_005381320

RefSeq Status:

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955416	7,620,553 - 7,672,342 (-)	NCBI

Sequence:

show sequence

GACACGCGGCAGACGGGGAGCCTGCAGCCCCTCCCCCGCTTGGTCTCATGGGAGTTGTAGTACG
AATCCAATTAAGGCTGGAGCCATGGCGGTGACCAAGGAGCTCTTACAGATGGACTTGTACGCGT
TGCTAGGCATTGAGGAGCAGGCGGCGGACAAAGAGGTGAAGAAAGCGTATAGGCAGAAGGCCCT
CTCCTGCCACCCAGACAAAAATCCAGATAATCCCAGAGCAGCTGAACTCTTCCACCAGCTTTCT
CAGGCCTTGGAAGTGCTGACCGACGCTGCAGCCAGGGCTGCATATGACAAGGTCAGGAAAGCCA
AGAAGCAGGCAGCAGCGAGGACCCAGAAACTTGATGAGAAAAGGAAAAGAGTGAAGCTTGACCT
GGAGGCCCGGGAGCGGCAGGCACAGGCCCAGGGGAGTGAGGAGGAGGAGGAGAGCCGGAGCACC
TGGACGCTGGAGCAGGAGATTGCACGCCTACGAGAAGAGGGTTCCCGGCAGCTGGAGGAGCAGC
AAAGGCTGATCCAGGAGCAGATACGCCAGGACCGTGAGCAAAGGCTGAGAGGAAAGGTGGAAAA
TACTGAAGGCAAAGGAACTCCCAAGCTAAAGCTAAAATGGAAGTGCAAGAAGGAGGATGAGTCC
CAAGGCGGCTACTCCAAAGATGTCCTCCTGCGGCTTTTACAAAAGTATGGTGAGGTTCTCAACC
TCGTGCTTTCCAGTAAAAAGGCAGGCACTGCCGTGGTGGAGTTTGCAACTGTCAAGGCTGCGGA
GCTGGCTTTCCGGAATGAAGTGGGTCTGGTGAATAACCCTCTGAAGATTTCATGGTTGGAGGGA
CAGCCCCTAGGCATGGTGGGCCCCAGCCACCCAGAACTATCAAAGGGCTCAGTGCGGTCGGAGA
GGGACTATGAGAGCCTCGTCATGATGCGCATGCGCCAGGCAGCCGAGCGCCAACAGCTGATCGC
CCAGATGCAGCAGGAGGACGAGGGGCAGCCCACATAGCCTCGAACTCCCTCCCTCCCACTCCAC
AGCCTTTTTCTTAACCAGTTCCAATAAACTTTTTTT

hide sequence

RefSeq Acc Id:

XM_013512569 ⟹ XP_013368023

RefSeq Status:

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955416	7,620,553 - 7,672,344 (-)	NCBI

Sequence:

show sequence

GCGACACGCGGCAGACGGGGAGCCTGCAGCCCCTCCCCCGCTTGGTCTCATGGGAGTTGTAGTA
CGAATCCAATTAAGGCTGGAGCCATGGCGGTGACCAAGGAGCTCTTACAGATGGACTTGTACGC
GTTGCTAGGCATTGAGGAGCAGGCGGCGGACAAAGAGGTGAAGAAAGCGTATAGGCAGAAGGCC
CTCTCCTGCCACCCAGACAAAAATCCAGATAATCCCAGAGCAGCTGAACTCTTCCACCAGCTTT
CTCAGGCCTTGGAAGTGCTGACCGACGCTGCAGCCAGGGCTGCATATGACAAGGTCAGGAAAGC
CAAGAAGCAGGCAGCAGCGAGGACCCAGAAACTTGATGAGAAAAGGAAAAGAGTGAAGCTTGAC
CTGGAGGCCCGGGAGCGGCAGGCACAGGCCCAGGGGAGTGAGGAGGAGGAGGAGAGCCGGAGCA
CCTGGACGCTGGAGCAGGAGATTGCACGCCTACGAGAAGAGGGTTCCCGGCAGCTGGAGGAGCA
GCAAAGGCTGATCCAGGAGCAGATACGCCAGGACCGTGAGCAAAGGCTGAGAGGAAAGGTGGAA
AATACTGAAGGCAAAGGAACTCCCAAGCTAAAGCTAAAATGGAAGTGCAAGAAGGAGGATGAGT
CCCAAGGCGGCTACTCCAAAGATGTCCTCCTGCGGCTTTTACAAAAGGAGCTGGCTTTCCGGAA
TGAAGTGGGTCTGGTGAATAACCCTCTGAAGATTTCATGGTTGGAGGGACAGCCCCTAGGCATG
GTGGGCCCCAGCCACCCAGAACTATCAAAGGGCTCAGTGCGGTCGGAGAGGGACTATGAGAGCC
TCGTCATGATGCGCATGCGCCAGGCAGCCGAGCGCCAACAGCTGATCGCCCAGATGCAGCAGGA
GGACGAGGGGCAGCCCACATAGCCTCGAACTCCCTCCCTCCCACTCCACAGCCTTTTTCTTAAC
CAGTTCCAATAAACTTTTTTT

hide sequence

Protein Sequences

Additional Information

External Database Links

Nomenclature History

More on Dnajc17
	NCBI Gene
	Ensembl Gene
	NCBI Genome Data Viewer

RGD Object Information
RGD ID:	8992928
Created:	2014-08-14
Species:	Chinchilla lanigera
Last Modified:	2019-11-26
Status:	ACTIVE

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)