Svbp (small vasohibin binding protein) - Rat Genome Database

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Gene: Svbp (small vasohibin binding protein) Chinchilla lanigera
Analyze
Symbol: Svbp
Name: small vasohibin binding protein
RGD ID: 8992604
Description: ENCODES a protein that exhibits microtubule binding (ortholog); peptidase activator activity (ortholog); INVOLVED IN axon development (ortholog); brain development (ortholog); negative regulation of endothelial cell migration (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); genetic disease (ortholog); microcephaly (ortholog); FOUND IN apical part of cell (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Ccdc23; coiled-coil domain containing 23; coiled-coil domain-containing protein 23
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555372,333,657 - 2,337,037 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555372,333,657 - 2,337,012 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Svbp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555372,333,657 - 2,337,037 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555372,333,657 - 2,337,012 (-)NCBIChiLan1.0ChiLan1.0
SVBP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38142,807,052 - 42,817,397 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl142,807,052 - 42,817,397 (-)EnsemblGRCh38hg38GRCh38
GRCh37143,272,723 - 43,283,068 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36143,045,320 - 43,055,510 (-)NCBINCBI36Build 36hg18NCBI36
Celera141,554,652 - 41,565,039 (-)NCBICelera
Cytogenetic Map1p34.2NCBI
HuRef141,392,668 - 41,403,073 (-)NCBIHuRef
CHM1_1143,389,526 - 43,399,814 (-)NCBICHM1_1
T2T-CHM13v2.0142,677,541 - 42,687,878 (-)NCBIT2T-CHM13v2.0
Svbp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394119,052,507 - 119,058,495 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4119,052,503 - 119,058,495 (+)EnsemblGRCm39 Ensembl
GRCm384119,195,310 - 119,201,298 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4119,195,306 - 119,201,298 (+)EnsemblGRCm38mm10GRCm38
MGSCv374118,867,915 - 118,873,903 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364118,693,341 - 118,699,230 (+)NCBIMGSCv36mm8
Celera4117,922,988 - 117,928,975 (+)NCBICelera
Cytogenetic Map4D2.1NCBI
cM Map455.34NCBI
Svbp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85138,091,773 - 138,099,048 (+)NCBIGRCr8
mRatBN7.25132,808,021 - 132,813,735 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5132,808,204 - 132,813,735 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5135,535,629 - 135,541,347 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05137,292,089 - 137,297,807 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05137,312,679 - 137,318,397 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05138,245,639 - 138,251,353 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5138,245,639 - 138,251,353 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05142,055,067 - 142,060,684 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45139,782,652 - 139,788,289 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15139,788,060 - 139,793,516 (+)NCBI
Celera5131,333,654 - 131,339,368 (+)NCBICelera
Cytogenetic Map5q36NCBI
SVBP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21183,995,703 - 184,006,033 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11183,137,366 - 183,147,697 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0142,105,405 - 42,115,721 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1143,482,870 - 43,492,542 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl143,482,870 - 43,492,577 (-)Ensemblpanpan1.1panPan2
SVBP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.115551,514 - 558,528 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl15551,873 - 558,475 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha15806,909 - 814,172 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.015633,443 - 640,713 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl15634,058 - 640,660 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.115543,015 - 550,270 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.015603,318 - 610,398 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.015619,542 - 626,797 (+)NCBIUU_Cfam_GSD_1.0
Svbp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505858,303,851 - 58,310,449 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647424,126,278 - 24,135,237 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647424,128,633 - 24,135,231 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100519023
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.14107,654,578 - 107,655,087 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24117,723,226 - 117,723,789 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SVBP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12090,115,509 - 90,128,169 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2090,116,353 - 90,127,807 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603326,782,432 - 26,795,143 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Svbp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248922,042,071 - 2,046,026 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248922,041,763 - 2,046,440 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000004285   ⟹   ENSCLAP00000004203
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555372,333,657 - 2,337,037 (-)Ensembl
RefSeq Acc Id: XM_005410622   ⟹   XP_005410679
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555372,333,657 - 2,337,012 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005410679 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000004203
  ENSCLAP00000004203.1
Reference Protein Sequences
RefSeq Acc Id: XP_005410679   ⟸   XM_005410622
- UniProtKB: A0A8C2UTU6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000004203   ⟸   ENSCLAT00000004285


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003001 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000004285 ENTREZGENE
  ENSCLAT00000004285.1 UniProtKB/TrEMBL
InterPro SVBP UniProtKB/TrEMBL
NCBI Gene Ccdc23 ENTREZGENE
PANTHER PTHR34762 UniProtKB/TrEMBL
  SMALL VASOHIBIN-BINDING PROTEIN UniProtKB/TrEMBL
Pfam CCDC23 UniProtKB/TrEMBL
UniProt A0A8C2UTU6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Svbp  small vasohibin binding protein  Ccdc23  coiled-coil domain containing 23  Symbol and/or name change 5135510 APPROVED