Lrig3 (leucine rich repeats and immunoglobulin like domains 3) - Rat Genome Database

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Gene: Lrig3 (leucine rich repeats and immunoglobulin like domains 3) Chinchilla lanigera
Analyze
Symbol: Lrig3
Name: leucine rich repeats and immunoglobulin like domains 3
RGD ID: 8992532
Description: INVOLVED IN otolith morphogenesis (ortholog); ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: leucine-rich repeats and immunoglobulin-like domains 3; leucine-rich repeats and immunoglobulin-like domains protein 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554586,562,167 - 6,601,517 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554586,562,167 - 6,601,517 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Lrig3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554586,562,167 - 6,601,517 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554586,562,167 - 6,601,517 (-)NCBIChiLan1.0ChiLan1.0
LRIG3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381258,872,155 - 58,920,504 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1258,872,149 - 58,920,504 (-)EnsemblGRCh38hg38GRCh38
GRCh371259,265,937 - 59,314,285 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361257,552,204 - 57,600,529 (-)NCBINCBI36Build 36hg18NCBI36
Build 341257,552,204 - 57,600,529NCBI
Celera1258,927,578 - 58,975,904 (-)NCBICelera
Cytogenetic Map12q14.1NCBI
HuRef1256,314,531 - 56,362,936 (-)NCBIHuRef
CHM1_11259,233,510 - 59,281,893 (-)NCBICHM1_1
T2T-CHM13v2.01258,852,431 - 58,900,780 (-)NCBIT2T-CHM13v2.0
Lrig3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910125,802,088 - 125,851,228 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10125,802,037 - 125,851,228 (+)EnsemblGRCm39 Ensembl
GRCm3810125,966,219 - 126,015,359 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10125,966,168 - 126,015,359 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710125,403,275 - 125,452,415 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610125,369,225 - 125,418,184 (+)NCBIMGSCv36mm8
Celera10128,374,213 - 128,423,610 (+)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1073.66NCBI
Lrig3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8763,701,724 - 63,751,898 (+)NCBIGRCr8
mRatBN7.2761,816,313 - 61,866,275 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl761,816,342 - 61,866,481 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0769,213,098 - 69,263,251 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl769,213,147 - 69,263,142 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0769,404,280 - 69,454,372 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4766,012,273 - 66,062,608 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera758,970,827 - 59,020,519 (+)NCBICelera
Cytogenetic Map7q22NCBI
LRIG3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21035,419,946 - 35,468,463 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11235,416,855 - 35,465,234 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01230,012,251 - 30,060,570 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11230,275,789 - 30,323,781 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1230,275,498 - 30,323,358 (+)Ensemblpanpan1.1panPan2
LRIG3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1102,723,836 - 2,772,630 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl102,724,951 - 2,772,636 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha102,789,369 - 2,838,992 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0102,737,466 - 2,787,369 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl102,739,331 - 2,787,479 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1102,714,388 - 2,764,026 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0102,956,608 - 3,006,074 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0103,082,721 - 3,131,801 (-)NCBIUU_Cfam_GSD_1.0
Lrig3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494555,940,378 - 55,981,106 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366462,886,069 - 2,929,552 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366462,889,331 - 2,929,836 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRIG3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl524,066,623 - 24,117,970 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1524,066,611 - 24,117,971 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2525,903,031 - 25,952,707 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LRIG3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11154,806,138 - 54,853,811 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1154,806,579 - 54,853,645 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037191,070,125 - 191,117,716 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lrig3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248028,801,280 - 8,848,024 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248028,801,368 - 8,848,718 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000015735   ⟹   ENSCLAP00000015573
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554586,562,167 - 6,601,517 (-)Ensembl
RefSeq Acc Id: XM_005397422   ⟹   XP_005397479
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554586,562,167 - 6,601,517 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005397479 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000015573
  ENSCLAP00000015573.1
RefSeq Acc Id: XP_005397479   ⟸   XM_005397422
- UniProtKB: A0A8C2VMP6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000015573   ⟸   ENSCLAT00000015735
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010704 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000015735 ENTREZGENE
  ENSCLAT00000015735.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/TrEMBL
InterPro Cys-rich_flank_reg_C UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
NCBI Gene Lrig3 ENTREZGENE
PANTHER KEKKON 5, ISOFORM A UniProtKB/TrEMBL
  SYNAPTIC ADHESION-LIKE MOLECULE SALM UniProtKB/TrEMBL
Pfam I-set UniProtKB/TrEMBL
  Ig_3 UniProtKB/TrEMBL
  LRR_1 UniProtKB/TrEMBL
  LRR_8 UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  LRR UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  LRR_SD22 UniProtKB/TrEMBL
  LRR_TYP UniProtKB/TrEMBL
  LRRCT UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
  SSF48726 UniProtKB/TrEMBL
UniProt A0A8C2VMP6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Lrig3  leucine rich repeats and immunoglobulin like domains 3    leucine-rich repeats and immunoglobulin-like domains 3  Symbol and/or name change 5135510 APPROVED