Gpr88 (G protein-coupled receptor 88)

Gene: Gpr88 (G protein-coupled receptor 88) Chinchilla lanigera

Analyze

Symbol:

Gpr88

Name:

G protein-coupled receptor 88

RGD ID:

8992031

Description:

ENCODES a protein that exhibits beta2-adrenergic receptor activity (ortholog); cytoskeletal motor activity (ortholog); INVOLVED IN adenylate cyclase-modulating G protein-coupled receptor signaling pathway (ortholog); G protein-coupled receptor signaling pathway (ortholog); locomotory behavior (ortholog); ASSOCIATED WITH Childhood-Onset Chorea with Psychomotor Retardation (ortholog); genetic disease (ortholog); maple syrup urine disease (ortholog); FOUND IN ciliary membrane (ortholog); cilium (ortholog); cytoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

probable G-protein coupled receptor 88

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955435	5,268,746 - 5,271,237 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Childhood-Onset Chorea with Psychomotor Retardation (ISO)

genetic disease (ISO)

maple syrup urine disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adenylate cyclase-modulating G protein-coupled receptor signaling pathway (ISO)

G protein-coupled receptor signaling pathway (ISO)

locomotory behavior (ISO)

motor learning (ISO)

neuromuscular process controlling balance (ISO)

neuronal action potential (ISO)

Cellular Component

ciliary membrane (ISO)

cilium (ISO)

cytoplasm (ISO)

nucleus (ISO)

plasma membrane (ISO)

Molecular Function

beta2-adrenergic receptor activity (ISO)

cytoskeletal motor activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Gpr88
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955435	5,268,746 - 5,271,237 (+)	NCBI	ChiLan1.0	ChiLan1.0

GPR88
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	100,538,139 - 100,542,021 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	100,538,139 - 100,542,021 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	101,003,695 - 101,007,577 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	100,776,316 - 100,780,171 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	100,715,713 - 100,719,591	NCBI
Celera	1	99,264,881 - 99,268,736 (+)	NCBI		Celera
Cytogenetic Map	1	p21.2	NCBI
HuRef	1	99,127,815 - 99,131,777 (+)	NCBI		HuRef
CHM1_1	1	101,119,832 - 101,123,687 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	100,386,520 - 100,390,416 (+)	NCBI		T2T-CHM13v2.0

Gpr88
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	116,043,304 - 116,047,123 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	116,043,303 - 116,047,152 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	116,249,654 - 116,253,540 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	116,249,654 - 116,253,503 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	115,952,572 - 115,956,402 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	116,241,660 - 116,245,458 (-)	NCBI		MGSCv36	mm8
Celera	3	122,679,632 - 122,683,466 (-)	NCBI		Celera
Cytogenetic Map	3	G1	NCBI
cM Map	3	50.23	NCBI

Gpr88
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	206,876,373 - 206,885,034 (-)	NCBI		GRCr8
mRatBN7.2	2	204,191,443 - 204,199,576 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	204,191,427 - 204,199,733 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	211,854,881 - 211,859,447 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	209,749,992 - 209,754,559 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	204,567,036 - 204,571,603 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	219,258,346 - 219,263,819 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	219,258,347 - 219,262,901 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	237,334,864 - 237,340,370 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	212,460,210 - 212,464,764 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	212,422,963 - 212,427,518 (-)	NCBI
Celera	2	196,686,707 - 196,691,227 (-)	NCBI		Celera
Cytogenetic Map	2	q42	NCBI

GPR88
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	126,485,809 - 126,489,693 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	125,643,969 - 125,649,248 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	103,194,721 - 103,200,712 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	101,909,929 - 101,911,740 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

GPR88
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	49,473,399 - 49,478,504 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	49,475,536 - 49,476,669 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	52,146,852 - 52,148,102 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	49,821,259 - 49,822,509 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	49,821,259 - 49,822,413 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	49,513,852 - 49,515,102 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	49,493,123 - 49,494,373 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	49,923,358 - 49,924,608 (-)	NCBI		UU_Cfam_GSD_1.0

Gpr88
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	110,853,688 - 110,857,668 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936748	657,587 - 662,769 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936748	657,876 - 662,831 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GPR88
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	117,618,733 - 117,619,884 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	117,616,596 - 117,623,752 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	129,210,683 - 129,214,011 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GPR88
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	32,799,493 - 32,803,502 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	32,801,372 - 32,802,526 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	25,254,394 - 25,259,371 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gpr88
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624857	3,435,952 - 3,440,055 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624857	3,435,286 - 3,440,746 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005389100	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01032879	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01032880	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDI01344475	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_005389100 ⟹ XP_005389157

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955435	5,268,746 - 5,271,237 (+)	NCBI

Sequence:

show sequence

AGTTGGAGACAGAAAGAAGGGAAAATGAAGCAGAGTGAAAGATAAGGTGACCGGGAGAAAGAAA
AAGGAACTTGTTAACTACAGGACTCTGAGCAAGATATTTTTCTTCCCTTTACAAGTTAGAAGCT
GTTGAATAATTCATCCCAGGCATAGAAAGGCTGTCTCTTCCCTGAGTGATGTATCGCTGAGCAG
GAGAGAGCTTCCAGTGGGTTCACCATAGCAGCCACCGCTCCTGCTTCTGAGCACAGGGCGCTCT
CCTCCAGCTCAGCTTCTGCCTTTGCAGCCAAGCGTCCTCTGGCTGTGCCGCCTGCCCACCGCCC
GGGCTTGCAGCGGCCACTTTACTTTCCCGAGCCCCGCTGCCAGCTGAGAAGTCTCCTGCAGCTG
CTGCTTCCTGCCTGGTGCCATGTGTGTGGATGCGGCTCGGGAGAAGCGGGGCACTTGCTCCTGG
CACGGAGCCCAGCGGAGTTTCCCCTGTTGATTCCTGGACCGCAGATGCTGCTGCTGAGGAGGTA
TTTCCTGGCATCCCTCCCTCTGCGATCGTCAGCTAAGGACCGGCCCCGAGACCAGGTACCCCCA
CCCTCTCCCTCTGGCACGTCCCGGGTTGGGGTAGCTCTGCTCTCTGCCGCTAGCGAGGGGCTCC
GGCCGGCATGTGGCGAGCGCTGTGCGTGCGCGCACGCCGTTGTCTCGGGGAAGCGGAGCGGGTC
CCTGGCGTTGCCGGCCCGGGGCTTCGCAGGTGCCTGCTGAACGCGGGGCGGCCTTTCCCGGCGC
GGGAGACATTTCCGAGGCAGGCACCTGTCATCTGCCGCCCCCGTCCTCCTGGAGCGCCCTCTCC
CCCTCCCCCAGCCCATCCTTCCGCCTCAGCCTTTGTGCGGCTGGCAGAGGGCTGCAGCGATGTC
TTTGCCTCCCCAGCCGGCAAGTGTCAGGATGGGCAGCGCTGCGAGAAGCCGACGCTAGGGCGCG
AGCAGGTGCGAAGCGTGGCCAGAATGACCAACTCCTCCTCCGCGGCCACCTCCTCCACCACCGG
GGAATCGCTGCTGCTGCTCTGCGAGGAAGAGGAGTCGTGGGCGGGCCGGCGCATCCCCGTGTCC
CTCCTGTACTCGGGCCTGGCCATCGGGGGCACGCTGGCCAACGGCATGGTCATCTATCTCGTGT
CGTCCTTCCGCAAGCTGCAGACCACCAGCAACGCCTTCATCGTGAACGGCTGCGCCGCCGACCT
CAGCGTCTGCGCCCTGTGGATGCCGCAGGAGGCGGTGCTGGGGCTGCTGCCCGCGGGCTCCGCC
GAGCCCCCCGGGGACTGGGGCGGCGCGGGGGGCAGCTACCGCCTGCTGCGCGGCGGGCTGCTGG
GCCTGGGGCTCACGGTGTCCCTGCTGTCGCACTGCCTCGTGGCTCTGAACCGCTACCTGCTCAT
CACCAGGGCGCCCGCCACCTACCAGGTGCTGTACCAGCGGCGCCACACGGCCGGCATGCTGGCG
CTGTCCTGGGCGCTGGCGCTGGCGCTGGTGCTGCTGCTGCCGCCCTGGGCGCCGCGAGAGCCCC
GAAGTCGGCGCCCCGGACGCGGAGACGCGCGGGCACTCGCCGGCCGCTCACGGCAGCCGGCTTT
GGAAGAAGCCTGCCCGACGTGGCCGTCCTGCGCGTCCTCCTGCAGCGCCGGGAGCGCCCTGGGT
GCGCGCGAGCCGGAGGACCTAACCGGGAGGGAGCACCGTGCGGAAAGTAGCAGAAAGGGGCTTT
TACCTCCGAGCACGCTCCGTTCTGTTTAA

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Protein Sequences


Protein RefSeqs	XP_005389157	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005389157 ⟸ XM_005389100

- Sequence:

show sequence

MWRALCVRARRCLGEAERVPGVAGPGLRRCLLNAGRPFPARETFPRQAPVICRPRPPGAPSPPP
PAHPSASAFVRLAEGCSDVFASPAGKCQDGQRCEKPTLGREQVRSVARMTNSSSAATSSTTGES
LLLLCEEEESWAGRRIPVSLLYSGLAIGGTLANGMVIYLVSSFRKLQTTSNAFIVNGCAADLSV
CALWMPQEAVLGLLPAGSAEPPGDWGGAGGSYRLLRGGLLGLGLTVSLLSHCLVALNRYLLITR
APATYQVLYQRRHTAGMLALSWALALALVLLLPPWAPREPRSRRPGRGDARALAGRSRQPALEE
ACPTWPSCASSCSAGSALGAREPEDLTGREHRAESSRKGLLPPSTLRSV

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Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	Gpr88	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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