Trpm4 (transient receptor potential cation channel subfamily M member 4) - Rat Genome Database

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Gene: Trpm4 (transient receptor potential cation channel subfamily M member 4) Chinchilla lanigera
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Symbol: Trpm4
Name: transient receptor potential cation channel subfamily M member 4
RGD ID: 8991887
Description: ENCODES a protein that exhibits ATP binding (ortholog); calcium activated cation channel activity (ortholog); calcium channel activity (ortholog); INVOLVED IN calcium ion transport (ortholog); calcium-mediated signaling (ortholog); cellular response to ATP (ortholog); ASSOCIATED WITH arrhythmogenic right ventricular cardiomyopathy (ortholog); atrioventricular block (ortholog); Brugada syndrome (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: transient receptor potential cation channel, subfamily M, member 4
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555591,546,365 - 1,581,712 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555591,539,036 - 1,581,800 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
Trpm4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555591,546,365 - 1,581,712 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555591,539,036 - 1,581,800 (-)NCBIChiLan1.0ChiLan1.0
TRPM4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1949,157,741 - 49,211,836 (+)EnsemblGRCh38hg38GRCh38
GRCh381949,157,792 - 49,211,841 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371949,661,049 - 49,715,093 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361954,352,864 - 54,406,905 (+)NCBINCBI36hg18NCBI36
Build 341954,352,863 - 54,406,903NCBI
Celera1946,527,963 - 46,581,978 (+)NCBI
Cytogenetic Map19q13.33NCBI
HuRef1946,037,071 - 46,092,109 (+)NCBIHuRef
CHM1_11949,662,673 - 49,716,555 (+)NCBICHM1_1
Trpm4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,952,579 - 44,983,495 (-)NCBIGRCm39mm39
GRCm39 Ensembl744,952,056 - 44,983,204 (-)Ensembl
GRCm38745,303,155 - 45,334,071 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,302,632 - 45,333,780 (-)EnsemblGRCm38mm10GRCm38
MGSCv37752,558,525 - 52,589,150 (-)NCBIGRCm37mm9NCBIm37
MGSCv36745,170,674 - 45,201,784 (-)NCBImm8
Celera740,759,067 - 40,790,038 (-)NCBICelera
Cytogenetic Map7B3NCBI
Trpm4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2195,781,805 - 95,812,095 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl195,782,000 - 95,812,532 (-)Ensembl
Rnor_6.01101,293,300 - 101,323,484 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1101,293,409 - 101,323,960 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01102,357,043 - 102,387,010 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4195,773,485 - 95,803,542 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1195,851,812 - 95,863,602 (-)NCBI
Celera190,039,848 - 90,063,911 (-)NCBICelera
Cytogenetic Map1q22NCBI
TRPM4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11955,095,029 - 55,150,464 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1955,095,029 - 55,150,464 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01946,168,301 - 46,224,726 (+)NCBIMhudiblu_PPA_v0panPan3
TRPM4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11107,261,760 - 107,304,157 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1107,261,756 - 107,303,346 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1106,849,462 - 106,891,183 (-)NCBI
ROS_Cfam_1.01107,786,342 - 107,828,325 (-)NCBI
UMICH_Zoey_3.11107,454,730 - 107,496,450 (-)NCBI
UNSW_CanFamBas_1.01107,100,989 - 107,142,706 (-)NCBI
UU_Cfam_GSD_1.01107,938,110 - 107,978,274 (-)NCBI
Trpm4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934921,474,889 - 21,506,283 (+)NCBI
SpeTri2.0NW_0049366643,093,258 - 3,124,473 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRPM4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl654,342,221 - 54,377,155 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1654,342,774 - 54,377,557 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2649,975,735 - 49,985,615 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRPM4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1642,379,534 - 42,424,721 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl642,379,659 - 42,424,146 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607322,272,664 - 22,341,345 (+)NCBIVero_WHO_p1.0
Trpm4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248324,902,335 - 4,937,806 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000010203   ⟹   ENSCLAP00000010073
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555591,546,365 - 1,581,712 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000010204   ⟹   ENSCLAP00000010074
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555591,546,365 - 1,578,053 (-)Ensembl
RefSeq Acc Id: XM_005412902   ⟹   XP_005412959
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555591,539,036 - 1,581,800 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005412903   ⟹   XP_005412960
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555591,545,889 - 1,581,800 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005412959 (Get FASTA)   NCBI Sequence Viewer  
  XP_005412960 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005412959   ⟸   XM_005412902
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005412960   ⟸   XM_005412903
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000010073   ⟸   ENSCLAT00000010203
RefSeq Acc Id: ENSCLAP00000010074   ⟸   ENSCLAT00000010204


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006981 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000010073 ENTREZGENE
Ensembl Transcript ENSCLAT00000010203 ENTREZGENE
NCBI Gene Trpm4 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Trpm4  transient receptor potential cation channel subfamily M member 4    transient receptor potential cation channel, subfamily M, member 4  Symbol and/or name change 5135510 APPROVED