Cplx3 (complexin 3) - Rat Genome Database

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Gene: Cplx3 (complexin 3) Chinchilla lanigera
Analyze
Symbol: Cplx3
Name: complexin 3
RGD ID: 8991493
Description: ENCODES a protein that exhibits neurotransmitter transmembrane transporter activity (ortholog); SNARE binding (ortholog); INVOLVED IN insulin secretion (ortholog); regulation of neurotransmitter secretion (ortholog); regulation of synaptic vesicle fusion to presynaptic active zone membrane (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN cytosol (ortholog); membrane (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: complexin-3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554503,105,203 - 3,110,374 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554503,105,364 - 3,110,246 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cplx3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554503,105,203 - 3,110,374 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554503,105,364 - 3,110,246 (-)NCBIChiLan1.0ChiLan1.0
CPLX3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381574,826,627 - 74,831,802 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1574,826,627 - 74,831,802 (+)EnsemblGRCh38hg38GRCh38
GRCh371575,118,968 - 75,124,143 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361572,906,004 - 72,911,189 (+)NCBINCBI36Build 36hg18NCBI36
Celera1552,068,980 - 52,074,165 (+)NCBICelera
Cytogenetic Map15q24.1NCBI
HuRef1551,915,985 - 51,921,170 (+)NCBIHuRef
CHM1_11575,237,636 - 75,242,821 (+)NCBICHM1_1
T2T-CHM13v2.01572,696,523 - 72,701,698 (+)NCBIT2T-CHM13v2.0
Cplx3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39957,507,275 - 57,513,564 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl957,507,275 - 57,513,564 (-)EnsemblGRCm39 Ensembl
GRCm38957,599,992 - 57,606,281 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl957,599,992 - 57,606,281 (-)EnsemblGRCm38mm10GRCm38
MGSCv37957,447,799 - 57,454,088 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36957,398,129 - 57,404,369 (-)NCBIMGSCv36mm8
Celera954,835,800 - 54,842,101 (-)NCBICelera
Cytogenetic Map9BNCBI
cM Map931.11NCBI
Cplx3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8866,899,438 - 66,906,200 (-)NCBIGRCr8
mRatBN7.2858,003,535 - 58,010,297 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl858,003,535 - 58,010,297 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx863,536,334 - 63,543,094 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0861,813,911 - 61,820,671 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0859,678,458 - 59,685,218 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0862,379,502 - 62,386,264 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl862,379,502 - 62,386,264 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0862,157,074 - 62,163,836 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4861,354,177 - 61,360,939 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera857,469,456 - 57,476,217 (-)NCBICelera
Cytogenetic Map8q24NCBI
CPLX3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21664,054,330 - 64,058,989 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11568,217,996 - 68,222,660 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01553,769,138 - 53,774,330 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11573,386,826 - 73,391,991 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1573,386,826 - 73,391,991 (+)Ensemblpanpan1.1panPan2
CPLX3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13037,888,770 - 37,893,168 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3037,888,076 - 37,893,182 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3037,820,094 - 37,825,164 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03038,092,804 - 38,097,575 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3038,093,160 - 38,097,571 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13038,045,283 - 38,050,349 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03038,091,612 - 38,096,684 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03038,327,114 - 38,332,184 (+)NCBIUU_Cfam_GSD_1.0
Cplx3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640115,950,458 - 115,954,982 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647133,798,635 - 33,802,176 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647133,798,523 - 33,803,045 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPLX3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl758,712,744 - 58,716,997 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1758,712,743 - 58,717,028 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2763,401,337 - 63,405,623 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CPLX3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1268,640,661 - 8,649,510 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl268,641,551 - 8,645,155 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048132,986,105 - 132,991,288 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cplx3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462489445,093 - 49,923 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462489442,204 - 49,875 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005393540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01042422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCLAT00000011180   ⟹   ENSCLAP00000011045
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554503,105,203 - 3,110,374 (-)Ensembl
RefSeq Acc Id: XM_005393540   ⟹   XP_005393597
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554503,105,364 - 3,110,246 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005393597 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000011045
  ENSCLAP00000011045.1
RefSeq Acc Id: XP_005393597   ⟸   XM_005393540
- UniProtKB: A0A8C2VA60 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000011045   ⟸   ENSCLAT00000011180


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007623 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000011180 ENTREZGENE
  ENSCLAT00000011180.1 UniProtKB/TrEMBL
InterPro Synaphin UniProtKB/TrEMBL
NCBI Gene Cplx3 ENTREZGENE
PANTHER COMPLEXIN-3 UniProtKB/TrEMBL
  PTHR16705 UniProtKB/TrEMBL
Pfam Synaphin UniProtKB/TrEMBL
UniProt A0A8C2VA60 ENTREZGENE, UniProtKB/TrEMBL