Chp1 (calcineurin like EF-hand protein 1) - Rat Genome Database

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Gene: Chp1 (calcineurin like EF-hand protein 1) Chinchilla lanigera
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Symbol: Chp1
Name: calcineurin like EF-hand protein 1
RGD ID: 8991411
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent protein binding (ortholog); kinase binding (ortholog); INVOLVED IN cytoplasmic microtubule organization (ortholog); membrane docking (ortholog); membrane fusion (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colon cancer (ortholog); Spastic Ataxia 9, Autosomal Recessive (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: calcineurin B homologous protein 1; calcineurin-like EF-hand protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554168,090,034 - 8,132,870 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554168,090,034 - 8,131,605 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
Chp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554168,090,034 - 8,132,870 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554168,090,034 - 8,131,605 (+)NCBIChiLan1.0ChiLan1.0
CHP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1541,230,839 - 41,281,887 (+)EnsemblGRCh38hg38GRCh38
GRCh381541,231,156 - 41,281,887 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371541,523,466 - 41,574,085 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361539,310,729 - 39,361,377 (+)NCBINCBI36hg18NCBI36
Build 341539,310,728 - 39,361,373NCBI
Celera1518,291,415 - 18,342,063 (+)NCBI
Cytogenetic Map15q15.1NCBI
HuRef1518,371,799 - 18,422,604 (+)NCBIHuRef
CHM1_11541,641,426 - 41,692,297 (+)NCBICHM1_1
Chp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392119,378,172 - 119,417,505 (+)NCBIGRCm39mm39
GRCm39 Ensembl2119,378,178 - 119,417,508 (+)Ensembl
GRCm382119,547,707 - 119,587,024 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2119,547,697 - 119,587,027 (+)EnsemblGRCm38mm10GRCm38
MGSCv372119,373,443 - 119,412,760 (+)NCBIGRCm37mm9NCBIm37
MGSCv362119,239,155 - 119,278,461 (+)NCBImm8
Celera2120,700,969 - 120,740,985 (+)NCBICelera
Cytogenetic Map2E5NCBI
Chp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23106,536,009 - 106,571,255 (+)NCBI
Rnor_6.0 Ensembl3111,354,506 - 111,389,989 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.03111,354,506 - 111,389,998 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03117,902,988 - 117,938,480 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43106,066,389 - 106,101,635 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13105,962,816 - 105,998,059 (+)NCBI
Celera3105,447,792 - 105,483,065 (+)NCBICelera
Cytogenetic Map3q35NCBI
CHP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11538,418,815 - 38,466,925 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1538,418,815 - 38,467,681 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01520,172,874 - 20,223,382 (+)NCBIMhudiblu_PPA_v0panPan3
CHP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1308,304,939 - 8,352,833 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl308,305,007 - 8,350,904 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha308,363,447 - 8,409,616 (+)NCBI
ROS_Cfam_1.0308,438,344 - 8,484,537 (+)NCBI
UMICH_Zoey_3.1308,359,874 - 8,408,027 (+)NCBI
UNSW_CanFamBas_1.0308,467,375 - 8,515,299 (+)NCBI
UU_Cfam_GSD_1.0308,598,734 - 8,645,069 (+)NCBI
Chp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864086,763,916 - 86,812,248 (+)NCBI
SpeTri2.0NW_0049364714,611,980 - 4,660,320 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1130,073,919 - 130,112,753 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11130,073,919 - 130,112,461 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21145,221,139 - 145,259,701 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CHP1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12641,734,698 - 41,785,273 (-)NCBI
ChlSab1.1 Ensembl2641,733,063 - 41,785,586 (-)Ensembl
Vero_WHO_p1.0NW_02366604899,207,184 - 99,258,544 (+)NCBI
Chp1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248048,431,999 - 8,474,458 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000014450   ⟹   ENSCLAP00000014292
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554168,090,034 - 8,132,870 (+)Ensembl
RefSeq Acc Id: XM_013512484   ⟹   XP_013367938
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554168,090,034 - 8,131,605 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013367938 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013367938   ⟸   XM_013512484
- Sequence:
RefSeq Acc Id: ENSCLAP00000014292   ⟸   ENSCLAT00000014450


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009852 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000014292 ENTREZGENE
Ensembl Transcript ENSCLAT00000014450 ENTREZGENE
NCBI Gene Chp1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Chp1  calcineurin like EF-hand protein 1    calcineurin-like EF-hand protein 1  Symbol and/or name change 5135510 APPROVED