Ankub1 (ankyrin repeat and ubiquitin domain containing 1) - Rat Genome Database

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Gene: Ankub1 (ankyrin repeat and ubiquitin domain containing 1) Chinchilla lanigera
Analyze
Symbol: Ankub1
Name: ankyrin repeat and ubiquitin domain containing 1
RGD ID: 8991159
Description: ASSOCIATED WITH genetic disease (ortholog); glycogen storage disease XV (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955448984,666 - 1,008,174 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955448986,177 - 1,008,175 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Ankub1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955448984,666 - 1,008,174 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955448986,177 - 1,008,175 (-)NCBIChiLan1.0ChiLan1.0
ANKUB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383149,761,100 - 149,792,554 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3149,761,100 - 149,968,385 (-)EnsemblGRCh38hg38GRCh38
GRCh373149,478,887 - 149,510,341 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363150,961,961 - 150,993,243 (-)NCBINCBI36Build 36hg18NCBI36
Celera3147,892,237 - 147,923,960 (-)NCBICelera
Cytogenetic Map3q25.1NCBI
HuRef3146,850,968 - 146,882,793 (-)NCBIHuRef
CHM1_13149,441,889 - 149,473,700 (-)NCBICHM1_1
T2T-CHM13v2.03152,512,353 - 152,543,796 (-)NCBIT2T-CHM13v2.0
Ankub1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39357,574,843 - 57,599,958 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl357,564,814 - 57,600,220 (-)EnsemblGRCm39 Ensembl
GRCm38357,667,422 - 57,692,537 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl357,657,393 - 57,692,799 (-)EnsemblGRCm38mm10GRCm38
MGSCv37357,471,344 - 57,496,459 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36357,755,351 - 57,780,466 (-)NCBIMGSCv36mm8
Celera357,359,337 - 57,383,730 (-)NCBICelera
Cytogenetic Map3DNCBI
cM Map327.97NCBI
Ankub1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82144,005,876 - 144,044,635 (-)NCBIGRCr8
mRatBN7.22141,857,623 - 141,894,624 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2141,856,573 - 141,894,339 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.02147,783,762 - 147,819,863 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2147,800,140 - 147,819,335 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02167,192,054 - 167,228,323 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42146,923,112 - 146,959,662 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2136,308,181 - 136,348,344 (-)NCBICelera
Cytogenetic Map2q26NCBI
ANKUB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22147,651,820 - 147,686,903 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13147,656,551 - 147,691,664 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03146,780,507 - 146,813,048 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13154,357,700 - 154,389,002 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3154,357,367 - 154,389,072 (-)Ensemblpanpan1.1panPan2
ANKUB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12344,486,531 - 44,516,850 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2344,349,407 - 44,379,813 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02345,113,701 - 45,143,930 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12344,700,963 - 44,731,178 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02344,749,302 - 44,779,945 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02345,005,149 - 45,035,785 (-)NCBIUU_Cfam_GSD_1.0
Ankub1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560291,417,270 - 91,467,939 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936758300,670 - 325,668 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKUB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1389,976,033 - 90,013,828 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11389,977,788 - 90,013,815 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21398,032,585 - 98,069,396 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ANKUB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11540,911,504 - 40,944,128 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1540,912,151 - 40,943,750 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604113,743,510 - 13,776,278 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ankub1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473027,082,009 - 27,125,838 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473027,082,687 - 27,125,424 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000015046   ⟹   ENSCLAP00000014887
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955448984,666 - 1,008,174 (-)Ensembl
RefSeq Acc Id: XM_005393004   ⟹   XP_005393061
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955448986,177 - 1,008,171 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013518681   ⟹   XP_013374135
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955448986,177 - 1,008,175 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005393061 (Get FASTA)   NCBI Sequence Viewer  
  XP_013374135 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000014887
  ENSCLAP00000014887.1
RefSeq Acc Id: XP_005393061   ⟸   XM_005393004
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VM86 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013374135   ⟸   XM_013518681
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000014887   ⟸   ENSCLAT00000015046
Protein Domains
Ubiquitin-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010267 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000015046 ENTREZGENE
  ENSCLAT00000015046.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro ANKUB1 UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  Ubiquitin-like_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
NCBI Gene Ankub1 ENTREZGENE
PANTHER PROTEIN ANKUB1 UniProtKB/TrEMBL
  PTHR46885 UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
PROSITE UBIQUITIN_2 UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt A0A8C2VM86 ENTREZGENE, UniProtKB/TrEMBL