Tdg (thymine DNA glycosylase) - Rat Genome Database

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Gene: Tdg (thymine DNA glycosylase) Chinchilla lanigera
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Symbol: Tdg
Name: thymine DNA glycosylase
RGD ID: 8989915
Description: ENCODES a protein that exhibits ATP binding (ortholog); chloride ion binding (ortholog); DNA binding (ortholog); INVOLVED IN base-excision repair (ortholog); base-excision repair, AP site formation (ortholog); DNA demethylation (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); Mammary Neoplasms, Experimental (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: G/T mismatch-specific thymine DNA glycosylase; thymine-DNA glycosylase
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540538,673,180 - 38,678,481 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540538,661,687 - 38,680,138 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References


Genomics

Comparative Map Data
Tdg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540538,673,180 - 38,678,481 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540538,661,687 - 38,680,138 (+)NCBIChiLan1.0ChiLan1.0
TDG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl12103,965,822 - 103,988,874 (+)EnsemblGRCh38hg38GRCh38
GRCh3812103,965,842 - 103,988,874 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3712104,359,650 - 104,382,652 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612102,883,747 - 102,906,786 (+)NCBINCBI36hg18NCBI36
Build 3412102,862,083 - 102,885,122NCBI
Celera12104,023,344 - 104,046,415 (+)NCBI
Cytogenetic Map12q23.3NCBI
HuRef12101,419,052 - 101,442,123 (+)NCBIHuRef
CHM1_112104,325,507 - 104,348,573 (+)NCBICHM1_1
Tdg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391082,465,649 - 82,486,633 (+)NCBIGRCm39mm39
GRCm39 Ensembl1082,465,662 - 82,486,633 (+)Ensembl
GRCm381082,629,814 - 82,650,799 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1082,629,828 - 82,650,799 (+)EnsemblGRCm38mm10GRCm38
MGSCv371082,092,583 - 82,113,239 (+)NCBIGRCm37mm9NCBIm37
MGSCv361082,059,680 - 82,080,598 (+)NCBImm8
Celera1084,612,863 - 84,633,428 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
Tdg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2721,077,853 - 21,097,617 (-)NCBI
Rnor_6.0 Ensembl727,193,998 - 27,214,236 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0727,194,000 - 27,213,676 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0727,313,355 - 27,333,031 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4723,300,450 - 23,320,095 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1723,320,723 - 23,340,366 (-)NCBI
Celera718,257,668 - 18,277,353 (-)NCBICelera
Cytogenetic Map7q13NCBI
TDG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112104,938,543 - 104,961,284 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12104,938,519 - 104,961,284 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012101,543,945 - 101,567,035 (+)NCBIMhudiblu_PPA_v0panPan3
TDG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11542,493,593 - 42,516,868 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1542,493,737 - 42,515,448 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1542,863,005 - 42,886,348 (+)NCBI
ROS_Cfam_1.01543,151,141 - 43,174,489 (+)NCBI
UMICH_Zoey_3.11542,417,248 - 42,440,580 (+)NCBI
UNSW_CanFamBas_1.01542,515,997 - 42,539,627 (+)NCBI
UU_Cfam_GSD_1.01542,787,401 - 42,810,747 (+)NCBI
Tdg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494517,466,063 - 17,495,748 (-)NCBI
SpeTri2.0NW_00493649210,476,472 - 10,506,144 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TDG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl580,473,233 - 80,492,287 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1580,473,233 - 80,492,295 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TDG
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11199,168,051 - 99,191,168 (+)NCBI
ChlSab1.1 Ensembl1199,181,608 - 99,193,591 (+)Ensembl
Vero_WHO_p1.0NW_023666037145,814,432 - 145,837,331 (-)NCBI
Tdg
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247504,707,347 - 4,723,307 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000012403   ⟹   ENSCLAP00000012261
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540538,673,180 - 38,678,481 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000012404   ⟹   ENSCLAP00000012262
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540538,673,303 - 38,677,685 (+)Ensembl
RefSeq Acc Id: XM_005374580   ⟹   XP_005374637
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540538,661,687 - 38,680,138 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005374637 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005374637   ⟸   XM_005374580
- Sequence:
RefSeq Acc Id: ENSCLAP00000012262   ⟸   ENSCLAT00000012404
RefSeq Acc Id: ENSCLAP00000012261   ⟸   ENSCLAT00000012403


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008462 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000012261 ENTREZGENE
Ensembl Transcript ENSCLAT00000012403 ENTREZGENE
NCBI Gene Tdg ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Tdg  thymine DNA glycosylase    thymine-DNA glycosylase  Symbol and/or name change 5135510 APPROVED