S100a13 (S100 calcium binding protein A13) - Rat Genome Database

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Gene: S100a13 (S100 calcium binding protein A13) Chinchilla lanigera
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Symbol: S100a13
Name: S100 calcium binding protein A13
RGD ID: 8989445
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); copper ion binding (ortholog); fibroblast growth factor binding (ortholog); INVOLVED IN positive regulation of cell population proliferation (ortholog); positive regulation of cytokine production (ortholog); positive regulation of I-kappaB kinase/NF-kappaB signaling (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955545264,455 - 282,497 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955545266,674 - 282,408 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References


Genomics

Comparative Map Data
S100a13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955545264,455 - 282,497 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955545266,674 - 282,408 (-)NCBIChiLan1.0ChiLan1.0
S100A13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1153,618,787 - 153,631,360 (-)EnsemblGRCh38hg38GRCh38
GRCh381153,618,799 - 153,634,361 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371153,591,275 - 153,606,837 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361151,857,899 - 151,873,192 (-)NCBINCBI36hg18NCBI36
Cytogenetic Map1q21.3NCBI
HuRef1124,954,786 - 124,970,074 (-)NCBIHuRef
CHM1_11154,987,252 - 155,002,545 (-)NCBICHM1_1
S100a13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39390,421,539 - 90,431,888 (+)NCBIGRCm39mm39
GRCm39 Ensembl390,421,742 - 90,431,888 (+)Ensembl
GRCm38390,514,233 - 90,524,581 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl390,514,435 - 90,524,581 (+)EnsemblGRCm38mm10GRCm38
MGSCv37390,318,682 - 90,328,503 (+)NCBIGRCm37mm9NCBIm37
MGSCv36390,600,362 - 90,610,504 (+)NCBImm8
Celera390,552,599 - 90,563,125 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.24NCBI
S100a13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22175,999,439 - 176,005,933 (+)NCBI
Rnor_6.0 Ensembl2189,906,022 - 189,912,516 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02189,906,022 - 189,912,516 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02209,329,663 - 209,342,985 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42182,790,173 - 182,796,668 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12182,741,175 - 182,746,774 (+)NCBI
Celera2169,934,942 - 169,936,034 (+)NCBICelera
Cytogenetic Map2q34NCBI
S100A13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11132,602,772 - 132,616,311 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1132,602,772 - 132,616,373 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01128,973,910 - 128,984,234 (-)NCBIMhudiblu_PPA_v0panPan3
S100A13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1743,428,538 - 43,442,052 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl743,433,253 - 43,447,513 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,921,215 - 42,935,025 (+)NCBI
ROS_Cfam_1.0743,377,905 - 43,391,739 (+)NCBI
UMICH_Zoey_3.1743,080,696 - 43,094,042 (+)NCBI
UNSW_CanFamBas_1.0743,134,412 - 43,147,710 (+)NCBI
UU_Cfam_GSD_1.0743,418,067 - 43,431,559 (+)NCBI
S100a13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505824,389,636 - 24,399,093 (-)NCBI
SpeTri2.0NW_0049365803,420,016 - 3,429,009 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
S100A13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1496,007,280 - 96,025,120 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
S100A13
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12010,177,062 - 10,186,382 (+)NCBI
ChlSab1.1 Ensembl2010,177,694 - 10,186,421 (+)Ensembl
Vero_WHO_p1.0NW_0236660389,554,251 - 9,563,594 (+)NCBI
S100a13
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248853,512,424 - 3,527,462 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000004027   ⟹   ENSCLAP00000003948
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955545264,455 - 282,497 (-)Ensembl
RefSeq Acc Id: XM_005411432   ⟹   XP_005411489
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955545266,674 - 275,825 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005411433   ⟹   XP_005411490
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955545266,674 - 278,891 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005411435   ⟹   XP_005411492
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955545266,674 - 275,805 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013508324   ⟹   XP_013363778
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955545266,674 - 282,172 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013508325   ⟹   XP_013363779
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955545266,674 - 282,407 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013508326   ⟹   XP_013363780
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955545266,674 - 282,408 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013508327   ⟹   XP_013363781
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955545266,674 - 281,173 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013508328   ⟹   XP_013363782
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955545266,674 - 281,173 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013508329   ⟹   XP_013363783
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955545274,874 - 275,701 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013508330   ⟹   XP_013363784
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955545266,674 - 281,173 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013508331   ⟹   XP_013363785
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955545266,674 - 278,891 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005411490   ⟸   XM_005411433
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_005411489   ⟸   XM_005411432
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_005411492   ⟸   XM_005411435
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_013363780   ⟸   XM_013508326
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013363779   ⟸   XM_013508325
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013363778   ⟸   XM_013508324
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013363784   ⟸   XM_013508330
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_013363781   ⟸   XM_013508327
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013363782   ⟸   XM_013508328
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013363785   ⟸   XM_013508331
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_013363783   ⟸   XM_013508329
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSCLAP00000003948   ⟸   ENSCLAT00000004027


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002812 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000003948 ENTREZGENE
Ensembl Transcript ENSCLAT00000004027 ENTREZGENE
NCBI Gene S100a13 ENTREZGENE