Megf10 (multiple EGF like domains 10) - Rat Genome Database

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Gene: Megf10 (multiple EGF like domains 10) Chinchilla lanigera
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Symbol: Megf10
Name: multiple EGF like domains 10
RGD ID: 8988044
Description: ENCODES a protein that exhibits complement component C1q complex binding (ortholog); Notch binding (ortholog); scavenger receptor activity (ortholog); INVOLVED IN apoptotic process involved in development (ortholog); engulfment of apoptotic cell (ortholog); homotypic cell-cell adhesion (ortholog); ASSOCIATED WITH Deglutition Disorders (ortholog); early-onset myopathy-areflexia-respiratory distress-dysphagia syndrome (ortholog); familial adenomatous polyposis 1 (ortholog); FOUND IN phagocytic cup (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: multiple EGF-like-domains 10; multiple epidermal growth factor-like domains protein 10
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955415335,012 - 513,891 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955415393,642 - 513,157 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References


Genomics

Comparative Map Data
Megf10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955415335,012 - 513,891 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955415393,642 - 513,157 (+)NCBIChiLan1.0ChiLan1.0
MEGF10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl5127,290,796 - 127,465,737 (+)EnsemblGRCh38hg38GRCh38
GRCh385127,229,519 - 127,461,222 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh375126,626,488 - 126,796,914 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365126,654,514 - 126,824,807 (+)NCBINCBI36hg18NCBI36
Celera5122,757,239 - 122,927,674 (+)NCBI
Cytogenetic Map5q23.2NCBI
HuRef5121,817,526 - 121,988,151 (+)NCBIHuRef
CHM1_15126,059,059 - 126,229,496 (+)NCBICHM1_1
Megf10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391857,266,162 - 57,430,539 (+)NCBIGRCm39mm39
GRCm39 Ensembl1857,266,162 - 57,430,539 (+)Ensembl
GRCm381857,133,090 - 57,297,467 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1857,133,090 - 57,297,467 (+)EnsemblGRCm38mm10GRCm38
MGSCv371857,292,744 - 57,457,121 (+)NCBIGRCm37mm9NCBIm37
MGSCv361857,258,844 - 57,422,835 (+)NCBImm8
Celera1858,443,454 - 58,608,465 (+)NCBICelera
Cytogenetic Map18D3NCBI
Megf10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21850,605,231 - 50,755,441 (+)NCBImRatBN7.2
Rnor_6.0 Ensembl1852,215,682 - 52,366,238 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01852,215,652 - 52,366,212 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01851,403,811 - 51,554,336 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41852,948,935 - 53,051,823 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11853,052,380 - 53,072,113 (+)NCBI
Celera1848,786,696 - 48,889,249 (+)NCBICelera
Cytogenetic Map18q12.1NCBI
MEGF10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15128,466,095 - 128,657,845 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5128,466,095 - 128,641,043 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v05122,639,155 - 122,877,324 (+)NCBIMhudiblu_PPA_v0panPan3
MEGF10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11116,359,648 - 16,574,882 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1116,378,669 - 16,617,335 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1115,047,444 - 15,360,462 (+)NCBI
ROS_Cfam_1.01116,981,258 - 17,301,745 (+)NCBI
UMICH_Zoey_3.11115,711,146 - 16,024,958 (+)NCBI
UNSW_CanFamBas_1.01115,557,940 - 15,871,023 (+)NCBI
UU_Cfam_GSD_1.01116,155,094 - 16,474,941 (+)NCBI
Megf10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213139,012,245 - 139,182,163 (+)NCBI
SpeTri2.0NW_004936504634,167 - 753,438 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MEGF10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.12130,226,222 - 130,403,960 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22135,524,848 - 135,686,689 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MEGF10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12330,028,154 - 30,405,033 (+)NCBI
ChlSab1.1 Ensembl2330,234,489 - 30,404,996 (+)Ensembl
Vero_WHO_p1.0NW_02366603447,643,480 - 48,026,869 (-)NCBI
Megf10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477414,147,412 - 14,354,886 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000015559   ⟹   ENSCLAP00000015398
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955415335,012 - 513,891 (+)Ensembl
RefSeq Acc Id: XM_013512378   ⟹   XP_013367832
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955415393,642 - 513,157 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013512379   ⟹   XP_013367833
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955415393,984 - 513,157 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013367832 (Get FASTA)   NCBI Sequence Viewer  
  XP_013367833 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013367832   ⟸   XM_013512378
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013367833   ⟸   XM_013512379
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000015398   ⟸   ENSCLAT00000015559


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010596 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000015398 ENTREZGENE
Ensembl Transcript ENSCLAT00000015559 ENTREZGENE
NCBI Gene Megf10 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Megf10  multiple EGF like domains 10    multiple EGF-like-domains 10  Symbol and/or name change 5135510 APPROVED