| Gene: Rnf217 (ring finger protein 217) Chinchilla lanigera |
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Analyze |
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| Symbol: |
Rnf217 |
| Name: |
ring finger protein 217 |
| RGD ID: |
8987986 |
| Description: |
ASSOCIATED WITH genetic disease (ortholog); multiple sclerosis (ortholog) |
| Type: |
protein-coding
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| RefSeq Status: |
MODEL |
| Previously known as: |
probable E3 ubiquitin-protein ligase RNF217 |
| RGD Orthologs |
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| Alliance Genes |
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| More Info |
more info ...
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| More Info |
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| Latest Assembly: |
ChiLan1.0 - Chinchilla ChiLan1.0 Assembly |
| NCBI Annotation Information: |
Annotation category: partial on reference assembly |
| Position: |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 | NW_004955436 | 6,458,088 - 6,566,112 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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| JBrowse: |
View Region in Genome Browser (JBrowse)
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| Model |
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Imported Disease Annotations - ClinVar
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References
Additional References at PubMed
Genomics
Comparative Map Data
Rnf217
(Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 | NW_004955436 | 6,458,088 - 6,566,112 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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RNF217
(Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 6 | 124,962,437 - 125,092,634 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 6 | 124,962,437 - 125,092,633 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 6 | 125,283,583 - 125,413,780 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 6 | 125,346,213 - 125,446,360 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 6 | 125,346,212 - 125,446,359 | NCBI | | | | | Celera | 6 | 126,049,522 - 126,149,701 (+) | NCBI | | Celera | | | Cytogenetic Map | 6 | q22.31 | NCBI | | | | | HuRef | 6 | 122,881,176 - 122,981,254 (+) | NCBI | | HuRef | | | CHM1_1 | 6 | 125,567,969 - 125,668,114 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 6 | 126,150,465 - 126,280,671 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Rnf217
(Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 10 | 31,377,883 - 31,485,721 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 10 | 31,369,189 - 31,485,180 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 10 | 31,501,887 - 31,609,725 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 10 | 31,493,193 - 31,609,184 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 10 | 31,221,693 - 31,329,531 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 10 | 31,191,301 - 31,300,328 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 10 | 32,427,225 - 32,533,457 (-) | NCBI | | Celera | | | Cytogenetic Map | 10 | A4 | NCBI | | | | | cM Map | 10 | 17.45 | NCBI | | | | |
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Rnf217
(Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 1 | 27,835,741 - 27,927,805 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 1 | 26,016,668 - 26,108,736 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 1 | 26,015,728 - 26,108,736 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 1 | 25,764,307 - 25,856,182 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 1 | 31,764,134 - 31,856,009 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 1 | 25,964,885 - 26,056,790 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 1 | 28,301,960 - 28,391,582 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 1 | 28,301,922 - 28,390,837 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 1 | 29,676,521 - 29,846,859 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 1 | 26,630,933 - 26,723,874 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 1 | 26,556,135 - 26,727,060 (+) | NCBI | | | | | Celera | 1 | 24,711,297 - 24,803,602 (+) | NCBI | | Celera | | | Cytogenetic Map | 1 | p11 | NCBI | | | | |
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RNF217
(Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 5 | 144,952,595 - 145,081,827 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 6 | 142,856,546 - 142,985,343 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 6 | 122,747,128 - 122,875,930 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 6 | 126,878,597 - 127,001,757 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 6 | 126,867,604 - 126,992,867 (+) | Ensembl | panpan1.1 | | panPan2 | |
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RNF217
(Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 1 | 63,902,985 - 64,094,491 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 1 | 63,962,515 - 64,085,011 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 1 | 64,771,771 - 64,904,604 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 1 | 64,169,156 - 64,302,061 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 1 | 64,168,719 - 64,294,050 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 1 | 64,100,868 - 64,233,594 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 1 | 63,830,960 - 64,020,201 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 1 | 64,538,810 - 64,671,819 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Rnf217
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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RNF217
(Sus scrofa - pig) |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 1 | 37,788,472 - 37,912,122 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 1 | 37,784,359 - 37,912,122 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 1 | 41,674,373 - 41,734,266 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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RNF217
(Chlorocebus sabaeus - green monkey) |
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Rnf217
(Heterocephalus glaber - naked mole-rat) |
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Expression
Sequence
| RefSeq Acc Id: |
XM_013516659 ⟹ XP_013372113 |
| Type: |
CODING |
| Position: |
| Chinchilla Assembly | Chr | Position (strand) | Source |
|---|
ChiLan1.0 | NW_004955436 | 6,458,088 - 6,566,112 (+) | NCBI |
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| Sequence: |
GCGGGGAGCGGGCGGGCCCCACGCGCCGCCGCGGACCCGGAAGCAGAAGCGCGTGGGCCGGGTC
CGCGCTGTCCGCGCGCGCGGCGCCGGCTGGGTCCCGGGCCCCGACGGCGCGGAGCGGGGCGCCC
CCCCGGCGCCGGAGCCCTTCCCGGGGCCCGGCCTGGGCGGGGGCGGGGGTCCCCTCGCGCCCCT
CACGGTGCTCCTGTGCCGGGTGTGCCTGGAAGACAAGCCCATCGAGCCCTTGCCCTGCTGCAAG
AAGGCGGTGTGCGCCGAGTGCCTCCGAATCTACCTGAGCGCGCAGGTACAGCTTGGCCAAGTAG
AAATCAAATGCCCTATCACCGAGTGCTTCGAATTTCTGGAAGAAAGAACTGTTGTCTACAACCT
CACACATGAAGACTCCATCAAGTATAAGTACTTCGTGGAACTCGGCCGAATTGATTCCAGCACG
AAGCCATGTCCTCAGTGCACGCACTTTACAACCTTCAAGAGGAAAGGACACCTCCCTACCCCAT
CCAGATCAGAGAGCAAATACAAAGTCCAGTGCCCCGCCTGCCAGTTCGTCTGGTGTTTTAAGTG
CCACTCTCCTTGGCACGAAGGTGTCAACTGCAAAGAGTACAGAAAAGGGGACAAACTGCTGCGT
CACTGGGCCAGCGAGATCGAGCACGGGCAGCGCAACGCCCAGAAGTGTCCAAAGTGCAAGATCC
ACATCCAGAAAACGGAAGGGTGTGACCACATGACCTGTTCACAGTGTAACACTAATTTTTGCTA
TCGGTGTGGGGAGAGATACCGCCAGCTCCGGTTTTTTGGAGACCACACATCAAACCTCAGCATA
TTTGGATGCAAATATCGCTACCTCCCAGAGCGACCTCACTTACGGAGATTAGTGCGAGGGTCAG
TCTGTGCTGGAAAGTTATTCATCGCACCTCTAATCCTGGTTTTGGGATTAGCACTAGGGGCCAT
AGCGGTTGTAATCGGTTTATTTGTATTTCCCATCTATTGCCTTTGTAAAAAACAGAGAAAGCGG
TCACGAACAGGCATGGACTAGTGGAGCGCAGATGACTCAGCGGAGTCGGCCGGCCTGCGGGATG
GCCCAGGTCTGTGACTCACCCCGGAGCCACCCTGGGAGGAGCCTGCTGCCATCATCTCCGTGGT
CCTCTGCGACCCCAATGCTCTAGCTACGGTGCACTCCCACCATGGTATCCCGCCCTTTCCCTAA
ACAAATTGCTGCTTTTTAAAAACGGTCACTTTCATAAACTCTAAGTACCTGTATCATAACTCTG
ATCTTCGTGGTTGTTGGAAGAAAATATTTTAATTAAGAACCAGTTCTCCTCAGAATTGCTCTGA
GGGTGGCGCGCCTCCTGAGCGCGGCTGGGACTGTCTTTGAACCCTGAACCCTCCCGCCTGTCTG
TGAGACTTGATGTGAATAGTGACGACGTCCTGTCTGTCCCCCAGAAGTGAGGCTGCTTTTCAGA
ACACACAAGTTCACTGAAAGCGTCTGTTCCCATTTGTGGCCCAAGCAGTAGAATTCCTTCATCC
TTCAGATACTGTCATTGCTAGAAATTTCCATACCCAAAAGGGAACTAATGAAACTAAATTAATG
GGAAAAATCACAAGTCACTGAAGTGTGTGTGTGTAGGGTTTTGGATGTGTGTGTATATAAGTAT
ATATTAAAAGTGAGCTCAATAACCTCGTGCTTATCTATGTCCATACCTCTACACTGTTTTTACA
TGCTTAGACCTGTTTAAAGATGCTGGTCCTGTTGGGGGTGTAATTTGGGAAAGGAGTGAATTAA
AGCCAGTGTAGACAACGGGCTGTTTCCATGGTGACCCTCTCTATTGTAAACTGAGAACACAGAG
AGGATGCTTTTAGGAAGTTCTCAAGGCCCAGATAGTCTTTTCAGATATCTTATATTTTAGCATA
AATGCTCTCCTCTATGAATAAATACTTCACATTATTCAGATTATTTCAGATTATTTAATTCAGA
TTATTTAGTCCAGAGAACAAGTTTGCTATAGCTCTATTCCACTGTTTTTTAAATTACCAACTTG
TAATTACAGGGAACTTCGCTTTAGGTCAAGATTTTAAATTATTTAATACGCCCCCCTTTTCTCT
TTCTGTTTTTTTTATTTGTTCCCGAGTTTCATGCAAACAAATATTAGTCTTCAAGGATTTTCCC
TATGTTTACTGCTCAAGTGCGTAATAACCTGGGGGATCTTTTTTTGGTGGGTAATTTAAAAACA
AATTTTTCTTTGTTCACAGATTCACTTAAAATATAAACTAGTTTTAGAGAAGGAAACACACAAA
AAAATTAAAAAATACTTTCAGGACATTTTCTAAGGTATGAAGTCTGAAAATAAAAGGACAATTA
ATGAAACTTTTACATGCTTTTGTTTTCATCAGCAAACTCCGACAGCTTCTGCTGGGAGAAGACA
ACCCTAAGAACCCAAAAGTTCGCAGTTGTCTGTAGAATCTCCAAATTAACCGCTGCATAGGAGT
ATGGTTAATGTGTCCGCAGCCTCATCAGACTTGAGATAGATTCTGTGGTAACATGTGCATTAAC
ACGAATAGGTTCCTCTTCCTTGCGCTCCTGAGTGTTAAAATGTTTTTTCAGTTTTCACTGCCCT
TCCAGCCCCTGACAGTCAAGGTTACTCATGGTTCACAAGCCAGCACGCTGCGTTTTTTTTGAGT
CACACCACGTAGTGTCACAGCTTCTGGGCTGATTGTCTGTTTGCAGGTAGAGAAGGGTGTGGCA
CCTGTGTCTCAGGAATAGCGTATTTCTGAAGCAAAACAGGAGAGGAGAAGAGAGACTGTCATTC
ACAAATTGTTCATCTGCCCATCCATTCGACGGCTATTTTCTGAGTGCGTGTTGTAGGTGGGTGC
TGTACTGTTAGACCACAAGAATGAATCTCTAGCCCAAATACATATTTCTGTCATAGAAGTACTT
AATCTTTTGAAATTCATCTTTTCTGGTTTTAGGTATTGGTTTGGCAGTGTATGAATATGACAAC
TTCCCACTCTAGTGTATCTGTGTATCTCTGTAGCATAAAAATATCTACACCACGTCCTTATATG
CCAAGTAGCTGAAAATATACTCTGGTCCTAGATCATCTATTTTCTTAGGTTATTTTGTCTGTTT
GTCTTTGGCCTACTCAGGGATTTTTATTCCTTTCTTCGGATAACTTATCTTTTAGACCTATTTT
TATATGATTTGGAAAACTTTCCAATATGCCAATTCCAAAGCGCTGTGTGTTCCCAGTCAAGGCT
GTCTCCACAGTGCGTGAGAGGCAGTGCCCTCTATTGCATGGGATTTTCATTTTTCTATTGCGTA
GATTTTTAAAATAAATATGTGCATTTTTCTCATTAAAGGTTGATAGGTATTAGGCTTTTCTCTG
CTGGTAATTTAAAGTAGTTCTTTGTGAATTCTTTTTACTGAGTTTCAAGATCTTTAAAAGAGAG
ACAAAAAAAAGGAGTATTTATATGTCAGTGCCAACTTTGAAGATAAAACAATAGTAGTAACTTT
ATTAGGGTAAATTCTGAAAACTACTTTAGAAACAAATGTGTGCACAGTAAATAAATATCTTTCT
ATCCAAGGCTTGTTAGTTTTATATGTTTTTATTATAAATTTAATATATGCTCCCTTAAAAATCA
AACTACATATAGAATTATGAAGTAAGAAATTCCTGTTTACCCCACCCCTTATTTTATAGGGGTA
GCCACTGTTCATGGTTTGTATGTGCTCTTCCAGACACTTTCTAAACATTTACAAGTAAATGTGT
GTGTTGTGTGCGTGCATCGTGTTTATTAGTTTTATACTAATAGAATGATAACTTTTTTACTTTG
CTGTGACTCTTTTTCATTTTATTATACATTAATAGATACCTTTCTATAAGAGTTTATATACATT
TACCTCATTCTTTTGTAAGTTACTGCATGCTCCATTGTAGGACCATACTTTAATTGACTTAACA
GGCATCAAGATTGTTTTCACATCTGTCTTACAAAGTACAGTGAAGACCCTTTTTCTATATATTT
TTCACCTCATGTGAGCACACCCGTAAGTTTTTAAATCTGGCTTTTATCTGATATTTTTAACAAA
AAATGCATTTTCAGGAAATGAAGGCATAGAAATAAATGTATTTCATAATAAAAGAAAGGGTGTA
GGAATAAAAGAAAGATTGTACAGGGAGTGTGTAAGTTTTAAAGAACAGCATCGTGGAAAGGATG
ACTTCCTCCTTGCTTGATTTGCCAAATAAGTACCTTGCCAAAACATATATAAGAAAATTACCGT
TTTTCAACAAAAATAAAACATCTCTCAGATAAAGTGAGAAGGATGAATTGATTTTTGGATTGCC
CACTCTTCAAATGTGATGGAATTAAATGAGCGCTCACGCCAAATTGATGGTTCTCATCACATCT
TGAAAAGCGCTGTCCAAGCCCACGCGTGTTACGCCGCACAGGAACTTGAGAAAAGCAGGAGACG
GTATGTTCACGATTACAGACGCCCACAGCAGCCCACGGAAGAGGAGATTCTGTAAGCTCACCTG
GACGATTGTGAATTAGGAAACAGCCTGAGGCACTCATTCTGTAATGAGCGCTCACTCCTCCTCC
CGAGGGATTGCTGGCGAAGGCGTCAGAAGAGGACAGGGCCACCCGGTGGTGCGGGCAGCATCCT
GTTACCACCGCCTTGATTTTTCCAACAGGTGCTATTGTGTCCCGAGAGGAGAACAGACAATTAA
ACACCAGCCAGGCTACAACACGATACCTTTACTTGCACCTTCGTACTGTGGGATCAAGATTCAG
CGGAGCCTGTCAGGGTGTCCCTTGCTCTGTGGCAGCGCTGCTTGGGTCGCGCACCCTCGCTGAC
CCTTTAGCTTTCAATCCCACTGCCCTAGTGTATGACACACTGTGCCCATAAAATGCCTGTGTCT
ACCCAACTTTGTCCTTCTCCACGCCTCTGCTATTCTAACTGCTCTTCTCGCCACAGTGGCGTGG
GAGTGGCCCCTGACGCTGGTCACATCTGAGCGCATAGGCTGCAGCATCCCACCCTCTCTCTTGC
TAAACGATGCAGTTGTTCTTAACATTTGACTTTTATGCTGCCTGATGAGTTTATAAAAATGCTA
GTGGTCTAAATGAGAGTCGTTGGTGAGCTTAAGTACAAAAGCAAGAACGTTCATACCAAAAGCC
ATTTGAGGCTTTAGCTTTATGAGGAAGCAGACACATTCCTAGAGTGTGAGCGTTCACATTGGAT
AACTTGCTTATCCTTCTGTGTGTGTGTGGCTGCAGTCCATCCCTGCTATTAAAAGTCATTTTCT
CTGTGGTCAGCTCCATTTTTTTATGTTACTGTTTATTATACATACAGCTTTAAAAGTCCATAAT
ACACTTTAAAATACTCGTGCCATTAAATACCTTAGTGACACACTTAAAGCAGCTAATGTGTATA
TTTCAATAGAGTGGAGTGAAAGTGTTTTGAAATATTTGTTCATCCCTTCAAATTTGTGGGGACT
CAGTAGCTAAAAATTTGAAAACAGTAAAATGTACCTGGAAAAAATGCAGCACTTTGTAAAGTGA
TAGTAATCCAGAAACTGCTTATGAAAAGTCTGGAGCTCAAATTTAATGACTAATACTTAATAAA
TATTATTAACTAATAA
hide sequence
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| RefSeq Acc Id: |
XP_013372113 ⟸ XM_013516659 |
| - Sequence: |
RGAGGPHAPPRTRKQKRVGRVRAVRARGAGWVPGPDGAERGAPPAPEPFPGPGLGGGGGPLAPL
TVLLCRVCLEDKPIEPLPCCKKAVCAECLRIYLSAQVQLGQVEIKCPITECFEFLEERTVVYNL
THEDSIKYKYFVELGRIDSSTKPCPQCTHFTTFKRKGHLPTPSRSESKYKVQCPACQFVWCFKC
HSPWHEGVNCKEYRKGDKLLRHWASEIEHGQRNAQKCPKCKIHIQKTEGCDHMTCSQCNTNFCY
RCGERYRQLRFFGDHTSNLSIFGCKYRYLPERPHLRRLVRGSVCAGKLFIAPLILVLGLALGAI
AVVIGLFVFPIYCLCKKQRKRSRTGMD
hide sequence
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Additional Information
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