Cited4 (Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4) - Rat Genome Database

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Gene: Cited4 (Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4) Chinchilla lanigera
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Symbol: Cited4
Name: Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4
RGD ID: 8986694
Description: ENCODES a protein that exhibits transcription coactivator activity (ortholog); INVOLVED IN positive regulation of DNA-templated transcription (ortholog); response to estrogen (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cbp/p300-interacting transactivator 4; Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955537688,739 - 689,290 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955537688,264 - 689,562 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
nucleus  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cited4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955537688,739 - 689,290 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955537688,264 - 689,562 (-)NCBIChiLan1.0ChiLan1.0
CITED4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38140,861,054 - 40,862,363 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl140,861,054 - 40,862,363 (-)EnsemblGRCh38hg38GRCh38
GRCh37141,326,726 - 41,328,035 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36141,099,315 - 41,100,605 (-)NCBINCBI36Build 36hg18NCBI36
Build 34140,995,821 - 40,997,111NCBI
Celera139,609,002 - 39,610,292 (-)NCBICelera
Cytogenetic Map1p34.2NCBI
HuRef139,444,241 - 39,445,487 (-)NCBIHuRef
CHM1_1141,442,621 - 41,443,911 (-)NCBICHM1_1
T2T-CHM13v2.0140,730,294 - 40,731,603 (-)NCBIT2T-CHM13v2.0
Cited4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394120,523,760 - 120,525,017 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4120,523,769 - 120,525,017 (+)EnsemblGRCm39 Ensembl
GRCm384120,666,563 - 120,667,820 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4120,666,572 - 120,667,820 (+)EnsemblGRCm38mm10GRCm38
MGSCv374120,339,168 - 120,340,425 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364120,164,236 - 120,165,455 (+)NCBIMGSCv36mm8
Celera4119,384,678 - 119,385,935 (+)NCBICelera
Cytogenetic Map4D2.1NCBI
cM Map456.52NCBI
Cited4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85139,532,165 - 139,533,056 (+)NCBIGRCr8
mRatBN7.25134,246,936 - 134,247,827 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5134,246,682 - 134,248,135 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5136,974,563 - 136,975,454 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05138,731,033 - 138,731,924 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05138,751,650 - 138,752,541 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05139,597,731 - 139,598,622 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5139,597,731 - 139,598,622 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05143,379,104 - 143,379,995 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45141,258,564 - 141,259,455 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15141,263,789 - 141,264,681 (+)NCBI
Celera5132,802,223 - 132,803,114 (+)NCBICelera
Cytogenetic Map5q36NCBI
CITED4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21185,955,395 - 185,957,274 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11185,096,029 - 185,098,566 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0140,154,556 - 40,156,846 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
CITED4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha152,443,110 - 2,444,290 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0152,274,378 - 2,275,558 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl152,274,567 - 2,275,112 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1152,179,923 - 2,181,103 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0152,239,984 - 2,241,162 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0152,255,531 - 2,256,711 (+)NCBIUU_Cfam_GSD_1.0
Cited4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505856,690,020 - 56,691,467 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493647422,514,800 - 22,516,166 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CITED4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.16170,324,787 - 170,326,140 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26157,372,237 - 157,373,591 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CITED4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12092,060,882 - 92,062,307 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2092,061,234 - 92,061,788 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603324,818,646 - 24,820,500 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cited4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624892291,219 - 292,476 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624892291,217 - 292,484 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000025697   ⟹   ENSCLAP00000025442
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955537688,739 - 689,290 (-)Ensembl
RefSeq Acc Id: XM_005410581   ⟹   XP_005410638
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955537688,264 - 689,562 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005410638 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000025442
  ENSCLAP00000025442.1
Reference Protein Sequences
RefSeq Acc Id: XP_005410638   ⟸   XM_005410581
- UniProtKB: A0A8C2W840 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000025442   ⟸   ENSCLAT00000025697


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000017523 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000025697 ENTREZGENE
  ENSCLAT00000025697.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.2200 UniProtKB/TrEMBL
InterPro CITED UniProtKB/TrEMBL
NCBI Gene Cited4 ENTREZGENE
PANTHER CBP/P300-INTERACTING TRANSACTIVATOR 4 UniProtKB/TrEMBL
  PTHR17045 UniProtKB/TrEMBL
Pfam CITED UniProtKB/TrEMBL
UniProt A0A8C2W840 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Cited4  Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4    Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4  Symbol and/or name change 5135510 APPROVED