Mrpl55 (mitochondrial ribosomal protein L55) - Rat Genome Database

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Gene: Mrpl55 (mitochondrial ribosomal protein L55) Chinchilla lanigera
Analyze
Symbol: Mrpl55
Name: mitochondrial ribosomal protein L55
RGD ID: 8986291
Description: ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); multiple mitochondrial dysfunctions syndrome 3 (ortholog); FOUND IN mitochondrial large ribosomal subunit (ortholog); mitochondrion (ortholog); synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 39S ribosomal protein L55, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955581312,256 - 314,138 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955581312,256 - 314,138 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Mrpl55
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955581312,256 - 314,138 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955581312,256 - 314,138 (+)NCBIChiLan1.0ChiLan1.0
MRPL55
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381228,106,685 - 228,109,299 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1228,106,679 - 228,109,312 (-)EnsemblGRCh38hg38GRCh38
GRCh371228,294,386 - 228,297,000 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361226,361,003 - 226,363,627 (-)NCBINCBI36Build 36hg18NCBI36
Celera1201,484,612 - 201,487,245 (-)NCBICelera
Cytogenetic Map1q42.13NCBI
HuRef1198,809,501 - 198,812,134 (-)NCBIHuRef
CHM1_11229,566,725 - 229,569,358 (-)NCBICHM1_1
T2T-CHM13v2.01227,295,671 - 227,315,175 (-)NCBIT2T-CHM13v2.0
Mrpl55
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391159,093,312 - 59,096,964 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1159,093,312 - 59,096,960 (+)EnsemblGRCm39 Ensembl
GRCm381159,202,486 - 59,206,138 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1159,202,486 - 59,206,134 (+)EnsemblGRCm38mm10GRCm38
MGSCv371159,016,019 - 59,019,504 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361159,018,712 - 59,022,197 (+)NCBIMGSCv36mm8
Celera1163,967,585 - 63,971,075 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1137.05NCBI
Mrpl55
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81044,488,252 - 44,491,401 (+)NCBIGRCr8
mRatBN7.21043,988,676 - 43,991,841 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1043,988,683 - 43,991,841 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1048,682,503 - 48,685,658 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01048,172,861 - 48,176,016 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01043,676,458 - 43,679,613 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01045,552,794 - 45,555,943 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1045,552,795 - 45,555,943 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01045,308,861 - 45,312,028 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41045,506,262 - 45,509,410 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11045,519,887 - 45,522,767 (+)NCBI
Celera1043,251,943 - 43,255,091 (+)NCBICelera
Cytogenetic Map10q22NCBI
MRPL55
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2121,497,118 - 21,499,779 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1121,435,362 - 21,437,964 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01203,508,861 - 203,511,486 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11208,720,030 - 208,722,666 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1208,720,030 - 208,722,668 (-)Ensemblpanpan1.1panPan2
MRPL55
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.114826,731 - 830,107 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl14826,726 - 830,107 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha14321,627 - 324,914 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.014547,149 - 550,437 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl14547,182 - 550,435 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.114737,958 - 741,246 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.014518,782 - 522,069 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.014504,671 - 507,961 (+)NCBIUU_Cfam_GSD_1.0
Mrpl55
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721387,766,963 - 87,770,562 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936864108,645 - 111,838 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPL55
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl251,243,294 - 51,247,594 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1251,243,257 - 51,247,626 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2278,534,029 - 78,535,135 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MRPL55
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1251,618,831 - 1,621,460 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl251,619,917 - 1,621,385 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660551,500,040 - 1,502,647 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mrpl55
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624937878,596 - 881,003 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624937878,596 - 881,098 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000001247   ⟹   ENSCLAP00000001206
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955581312,256 - 314,138 (+)Ensembl
RefSeq Acc Id: XM_005414236   ⟹   XP_005414293
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955581312,258 - 314,138 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005414237   ⟹   XP_005414294
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955581312,257 - 314,138 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013509745   ⟹   XP_013365199
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955581312,256 - 314,138 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005414293 (Get FASTA)   NCBI Sequence Viewer  
  XP_005414294 (Get FASTA)   NCBI Sequence Viewer  
  XP_013365199 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000001206
  ENSCLAP00000001206.1
RefSeq Acc Id: XP_005414294   ⟸   XM_005414237
- UniProtKB: A0A8C2UHY1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005414293   ⟸   XM_005414236
- UniProtKB: A0A8C2UHY1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013365199   ⟸   XM_013509745
- UniProtKB: A0A8C2UHY1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000001206   ⟸   ENSCLAT00000001247


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000917 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000001247 ENTREZGENE
  ENSCLAT00000001247.1 UniProtKB/TrEMBL
Gene3D-CATH 6.20.130.20 UniProtKB/TrEMBL
InterPro Ribosomal_L55_mit UniProtKB/TrEMBL
  Ribosomal_L55_sf UniProtKB/TrEMBL
NCBI Gene Mrpl55 ENTREZGENE
PANTHER 39S RIBOSOMAL PROTEIN L55, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR34095 UniProtKB/TrEMBL
Pfam Mitoc_L55 UniProtKB/TrEMBL
UniProt A0A8C2UHY1 ENTREZGENE, UniProtKB/TrEMBL