Hnrnpab (heterogeneous nuclear ribonucleoprotein A/B) - Rat Genome Database

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Gene: Hnrnpab (heterogeneous nuclear ribonucleoprotein A/B) Chinchilla lanigera
Analyze
Symbol: Hnrnpab
Name: heterogeneous nuclear ribonucleoprotein A/B
RGD ID: 8986117
Description: ENCODES a protein that exhibits protein-containing complex binding (ortholog); RNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cellular response to amino acid stimulus (ortholog); epithelial to mesenchymal transition (ortholog); mRNA modification (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Ehlers-Danlos syndrome dermatosparaxis type (ortholog); Ehlers-Danlos syndrome spondylodysplastic type 2 (ortholog); Experimental Mammary Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); dendrite (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554082,060,829 - 2,065,416 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554082,060,288 - 2,064,998 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Hnrnpab
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554082,060,829 - 2,065,416 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554082,060,288 - 2,064,998 (-)NCBIChiLan1.0ChiLan1.0
HNRNPAB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385178,204,533 - 178,211,163 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5178,204,533 - 178,211,163 (+)EnsemblGRCh38hg38GRCh38
GRCh375177,631,534 - 177,638,164 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365177,564,114 - 177,570,790 (+)NCBINCBI36Build 36hg18NCBI36
Build 345177,564,113 - 177,570,789NCBI
Celera5173,258,497 - 173,265,171 (+)NCBICelera
Cytogenetic Map5q35.3NCBI
HuRef5172,357,799 - 172,364,473 (+)NCBIHuRef
CHM1_15177,063,918 - 177,070,606 (+)NCBICHM1_1
T2T-CHM13v2.05178,754,824 - 178,761,448 (+)NCBIT2T-CHM13v2.0
Hnrnpab
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391151,490,927 - 51,497,708 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1151,490,927 - 51,497,674 (-)EnsemblGRCm39 Ensembl
GRCm381151,600,100 - 51,606,881 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1151,600,100 - 51,606,847 (-)EnsemblGRCm38mm10GRCm38
MGSCv371151,413,602 - 51,420,383 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361151,443,523 - 51,450,270 (-)NCBIMGSCv36mm8
Celera1156,171,430 - 56,178,210 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1131.11NCBI
Hnrnpab
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81036,358,004 - 36,363,898 (-)NCBIGRCr8
mRatBN7.21035,857,040 - 35,862,935 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1035,857,041 - 35,863,344 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1040,551,497 - 40,557,391 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01040,041,789 - 40,047,683 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01035,545,198 - 35,551,092 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01034,955,713 - 34,961,662 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1037,049,677 - 37,055,282 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1034,955,716 - 34,961,608 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01036,821,682 - 36,827,630 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41037,117,285 - 37,123,177 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11227,570,905 - 27,583,441 (+)NCBI
Celera1035,213,782 - 35,219,674 (-)NCBICelera
Cytogenetic Map10q22NCBI
HNRNPAB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24173,146,592 - 173,153,282 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15171,286,162 - 171,292,839 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05173,364,301 - 173,370,974 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15180,622,362 - 180,628,209 (+)NCBIpanpan1.1PanPan1.1panPan2
HNRNPAB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1113,355,051 - 3,360,376 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl113,355,050 - 3,360,258 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha113,498,638 - 3,505,066 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0113,331,321 - 3,337,750 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl113,331,325 - 3,337,599 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1113,301,752 - 3,308,179 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0113,383,069 - 3,389,498 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0113,621,655 - 3,628,090 (-)NCBIUU_Cfam_GSD_1.0
Hnrnpab
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213113,473,382 - 113,517,602 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936647478,443 - 484,570 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936647478,445 - 520,361 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HNRNPAB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1280,186,998 - 80,194,155 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2281,799,657 - 81,810,402 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HNRNPAB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12379,891,942 - 79,903,289 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607511,195,612 - 11,202,622 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hnrnpab
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473341,398,123 - 41,403,617 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473341,387,068 - 41,403,701 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000016176   ⟹   ENSCLAP00000016012
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554082,060,829 - 2,065,416 (-)Ensembl
RefSeq Acc Id: XM_005376037   ⟹   XP_005376094
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554082,060,288 - 2,064,998 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013508056   ⟹   XP_013363510
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554082,060,288 - 2,064,998 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005376094 (Get FASTA)   NCBI Sequence Viewer  
  XP_013363510 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000016012.1
Reference Protein Sequences
RefSeq Acc Id: XP_005376094   ⟸   XM_005376037
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013363510   ⟸   XM_013508056
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000016012   ⟸   ENSCLAT00000016176
Protein Domains
RRM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011022 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000016176.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro hnRNPAB_RRM1 UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
NCBI Gene Hnrnpab ENTREZGENE
PANTHER PTHR48033:SF11 UniProtKB/TrEMBL
  RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A8C2YQK3_CHILA UniProtKB/TrEMBL