Kalrn (kalirin RhoGEF kinase) - Rat Genome Database

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Gene: Kalrn (kalirin RhoGEF kinase) Chinchilla lanigera
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Symbol: Kalrn
Name: kalirin RhoGEF kinase
RGD ID: 8985571
Description: ENCODES a protein that exhibits enzyme binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN adult locomotory behavior (ortholog); axonogenesis (ortholog); behavioral fear response (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH Coronary Disease (ortholog); Primary Lymphedema with Myelodysplasia (ortholog); FOUND IN cytosol (ortholog); glutamatergic synapse (ortholog); neuron projection (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: kalirin; kalirin, RhoGEF kinase
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542723,184,739 - 23,816,811 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542723,184,751 - 23,823,128 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Kalrn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542723,184,739 - 23,816,811 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542723,184,751 - 23,823,128 (+)NCBIChiLan1.0ChiLan1.0
KALRN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3124,033,369 - 124,726,325 (+)EnsemblGRCh38hg38GRCh38
GRCh383124,033,341 - 124,726,325 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh373123,813,554 - 124,445,172 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363125,296,275 - 125,922,726 (+)NCBINCBI36hg18NCBI36
Celera3122,221,230 - 122,847,210 (+)NCBI
Cytogenetic Map3q21.1-q21.2NCBI
HuRef3121,187,838 - 121,814,322 (+)NCBIHuRef
CHM1_13123,776,558 - 124,403,021 (+)NCBICHM1_1
Kalrn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391633,789,443 - 34,393,647 (-)NCBIGRCm39mm39
GRCm39 Ensembl1633,789,443 - 34,393,902 (-)Ensembl
GRCm381633,969,073 - 34,573,277 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1633,969,073 - 34,573,532 (-)EnsemblGRCm38mm10GRCm38
MGSCv371633,969,159 - 34,514,113 (-)NCBIGRCm37mm9NCBIm37
MGSCv361633,892,682 - 34,433,795 (-)NCBImm8
Celera1634,453,093 - 34,990,407 (-)NCBICelera
Cytogenetic Map16B3NCBI
Kalrn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21166,198,155 - 66,803,166 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1166,198,173 - 66,797,610 (+)Ensembl
Rnor_6.01169,484,293 - 70,025,682 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1169,484,293 - 70,025,633 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01172,575,016 - 73,115,328 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41168,124,348 - 68,611,336 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11168,205,034 - 68,668,925 (+)NCBI
Celera1165,708,953 - 66,248,259 (+)NCBICelera
Cytogenetic Map11q22NCBI
KALRN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13128,098,363 - 128,722,156 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3128,225,413 - 128,720,441 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03121,138,136 - 121,828,723 (+)NCBIMhudiblu_PPA_v0panPan3
KALRN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13327,161,403 - 27,752,891 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3327,161,504 - 27,746,497 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3327,117,706 - 27,776,818 (+)NCBI
ROS_Cfam_1.03327,329,328 - 27,797,773 (+)NCBI
UMICH_Zoey_3.13327,125,464 - 27,784,937 (+)NCBI
UNSW_CanFamBas_1.03327,169,910 - 27,829,241 (+)NCBI
UU_Cfam_GSD_1.03327,786,940 - 28,447,934 (+)NCBI
Kalrn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602126,658,106 - 127,230,908 (-)NCBI
SpeTri2.0NW_004936725749,382 - 1,020,702 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KALRN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12256,106,677 - 56,820,004 (-)NCBI
ChlSab1.1 Ensembl2256,151,819 - 56,754,538 (-)Ensembl
Vero_WHO_p1.0NW_023666041109,573,807 - 110,217,834 (+)NCBI
Kalrn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473154,934 - 756,707 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005386533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005386534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005386535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005386536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005386537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005386538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005386539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005386540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005386541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013515182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013515183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01027482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01027483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01027484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01027485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01027486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01027487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01027488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01027489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01027490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01027491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01027492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01027493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBDJ01071026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCLAT00000013771   ⟹   ENSCLAP00000013616
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542723,184,739 - 23,816,811 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000013772   ⟹   ENSCLAP00000013617
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542723,184,739 - 23,816,811 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000013773   ⟹   ENSCLAP00000013618
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542723,249,447 - 23,816,811 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000013774   ⟹   ENSCLAP00000013619
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542723,249,447 - 23,644,959 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000013775   ⟹   ENSCLAP00000013620
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542723,249,799 - 23,643,481 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000013776   ⟹   ENSCLAP00000013621
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542723,529,511 - 23,609,673 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000013777   ⟹   ENSCLAP00000013622
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542723,629,144 - 23,765,486 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000013778   ⟹   ENSCLAP00000013623
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542723,694,085 - 23,816,811 (+)Ensembl
RefSeq Acc Id: XM_005386533   ⟹   XP_005386590
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542723,249,639 - 23,823,128 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005386534   ⟹   XP_005386591
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542723,184,751 - 23,823,128 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005386535   ⟹   XP_005386592
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542723,249,639 - 23,823,128 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005386536   ⟹   XP_005386593
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542723,184,751 - 23,823,128 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005386537   ⟹   XP_005386594
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542723,184,751 - 23,823,128 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005386538   ⟹   XP_005386595
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542723,184,751 - 23,765,873 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005386539   ⟹   XP_005386596
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542723,249,639 - 23,644,893 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005386540   ⟹   XP_005386597
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542723,249,639 - 23,644,893 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005386541   ⟹   XP_005386598
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542723,694,306 - 23,823,128 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013515182   ⟹   XP_013370636
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542723,184,751 - 23,823,128 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013515183   ⟹   XP_013370637
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542723,184,751 - 23,823,128 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005386594   ⟸   XM_005386537
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_005386591   ⟸   XM_005386534
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005386593   ⟸   XM_005386536
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_005386595   ⟸   XM_005386538
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_005386597   ⟸   XM_005386540
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_005386590   ⟸   XM_005386533
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005386592   ⟸   XM_005386535
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_005386596   ⟸   XM_005386539
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_005386598   ⟸   XM_005386541
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_013370636   ⟸   XM_013515182
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013370637   ⟸   XM_013515183
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: ENSCLAP00000013619   ⟸   ENSCLAT00000013774
RefSeq Acc Id: ENSCLAP00000013620   ⟸   ENSCLAT00000013775
RefSeq Acc Id: ENSCLAP00000013621   ⟸   ENSCLAT00000013776
RefSeq Acc Id: ENSCLAP00000013622   ⟸   ENSCLAT00000013777
RefSeq Acc Id: ENSCLAP00000013616   ⟸   ENSCLAT00000013771
RefSeq Acc Id: ENSCLAP00000013617   ⟸   ENSCLAT00000013772
RefSeq Acc Id: ENSCLAP00000013618   ⟸   ENSCLAT00000013773
RefSeq Acc Id: ENSCLAP00000013623   ⟸   ENSCLAT00000013778


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009409 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000013616 ENTREZGENE
  ENSCLAP00000013618 ENTREZGENE
  ENSCLAP00000013619 ENTREZGENE
  ENSCLAP00000013620 ENTREZGENE
  ENSCLAP00000013623 ENTREZGENE
Ensembl Transcript ENSCLAT00000013771 ENTREZGENE
  ENSCLAT00000013773 ENTREZGENE
  ENSCLAT00000013774 ENTREZGENE
  ENSCLAT00000013775 ENTREZGENE
  ENSCLAT00000013778 ENTREZGENE
NCBI Gene Kalrn ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-05-02 Kalrn  kalirin RhoGEF kinase    kalirin, RhoGEF kinase  Symbol and/or name change 5135510 APPROVED