Bcor (BCL6 corepressor) - Rat Genome Database

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Gene: Bcor (BCL6 corepressor) Chinchilla lanigera
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Symbol: Bcor
Name: BCL6 corepressor
RGD ID: 8984525
Description: ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); heat shock protein binding (ortholog); histone deacetylase binding (ortholog); INVOLVED IN blastocyst hatching (ortholog); chromatin remodeling (ortholog); heart development (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); adenoid cystic carcinoma (ortholog); autistic disorder (ortholog); FOUND IN BCOR complex (ortholog); nucleoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BCL-6 corepressor
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555661,412,540 - 1,457,329 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555661,412,540 - 1,510,339 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline

Genomics

Comparative Map Data
Bcor
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555661,412,540 - 1,457,329 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555661,412,540 - 1,510,339 (-)NCBIChiLan1.0ChiLan1.0
BCOR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X40,051,246 - 40,177,329 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 EnsemblX40,049,815 - 40,177,329 (-)EnsemblGRCh38hg38GRCh38
GRCh37X39,910,499 - 40,036,582 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X39,795,561 - 39,846,998 (-)NCBINCBI36Build 36hg18NCBI36
CeleraX44,049,354 - 44,175,356 (-)NCBICelera
Cytogenetic MapXp11.4NCBI
HuRefX37,648,006 - 37,771,447 (-)NCBIHuRef
CHM1_1X39,942,309 - 40,068,287 (-)NCBICHM1_1
T2T-CHM13v2.0X39,452,491 - 39,578,567 (-)NCBIT2T-CHM13v2.0
Bcor
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X11,902,976 - 12,026,769 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX11,902,979 - 12,026,594 (-)EnsemblGRCm39 Ensembl
GRCm38X12,036,737 - 12,160,516 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX12,036,740 - 12,160,355 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X11,613,863 - 11,737,481 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X11,193,696 - 11,237,013 (-)NCBIMGSCv36mm8
CeleraX9,733,265 - 9,856,163 (-)NCBICelera
Cytogenetic MapXA1.1NCBI
Bcor
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X10,609,756 - 10,729,613 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX10,687,732 - 10,729,613 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX10,875,038 - 10,916,895 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0X14,371,910 - 14,413,764 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0X10,634,826 - 10,676,706 (+)NCBIRnor_WKY
Rnor_6.0X11,570,155 - 11,692,022 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX11,648,989 - 11,691,099 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X12,366,781 - 12,488,777 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X22,699,778 - 22,820,234 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX11,211,546 - 11,253,981 (+)NCBICelera
Cytogenetic MapXq12NCBI
BCOR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X40,203,565 - 40,328,788 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX40,202,235 - 40,249,986 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X32,497,931 - 32,624,307 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
BCOR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X34,621,314 - 34,735,502 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX34,621,886 - 34,645,766 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX21,969,928 - 22,084,065 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X34,669,641 - 34,783,826 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX34,668,759 - 34,753,231 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X34,749,439 - 34,863,578 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X34,721,876 - 34,836,005 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X34,764,590 - 34,878,770 (-)NCBIUU_Cfam_GSD_1.0
Bcor
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X26,923,332 - 26,971,483 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365026,764,043 - 6,812,194 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BCOR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX35,768,017 - 35,814,833 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X35,768,013 - 35,891,013 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X39,823,458 - 39,946,360 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BCOR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X37,191,242 - 37,319,966 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX37,192,874 - 37,319,782 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660762,405,573 - 2,532,624 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bcor
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476215,420,596 - 15,465,873 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476215,338,331 - 15,465,683 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000000133   ⟹   ENSCLAP00000000106
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555661,412,540 - 1,457,329 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000000134   ⟹   ENSCLAP00000000107
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555661,412,540 - 1,457,329 (-)Ensembl
RefSeq Acc Id: XM_005413277   ⟹   XP_005413334
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555661,412,540 - 1,457,329 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005413278   ⟹   XP_005413335
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555661,412,540 - 1,457,329 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005413279   ⟹   XP_005413336
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555661,412,540 - 1,457,329 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005413280   ⟹   XP_005413337
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555661,412,540 - 1,457,329 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005413281   ⟹   XP_005413338
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555661,412,540 - 1,455,293 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013509214   ⟹   XP_013364668
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555661,412,540 - 1,510,339 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013509215   ⟹   XP_013364669
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555661,412,540 - 1,455,940 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013509216   ⟹   XP_013364670
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555661,412,540 - 1,455,293 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013509217   ⟹   XP_013364671
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555661,412,540 - 1,455,293 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005413336   ⟸   XM_005413279
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_005413334   ⟸   XM_005413277
- Peptide Label: isoform X2
- UniProtKB: A0A8C2UHD2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005413337   ⟸   XM_005413280
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_005413335   ⟸   XM_005413278
- Peptide Label: isoform X4
- UniProtKB: A0A8C2ULA7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005413338   ⟸   XM_005413281
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013364668   ⟸   XM_013509214
- Peptide Label: isoform X2
- UniProtKB: A0A8C2UHD2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013364669   ⟸   XM_013509215
- Peptide Label: isoform X2
- UniProtKB: A0A8C2UHD2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013364670   ⟸   XM_013509216
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013364671   ⟸   XM_013509217
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSCLAP00000000107   ⟸   ENSCLAT00000000134
RefSeq Acc Id: ENSCLAP00000000106   ⟸   ENSCLAT00000000133
Protein Domains
BCOR   PUFD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000121 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000000106 ENTREZGENE
  ENSCLAP00000000106.1 UniProtKB/TrEMBL
  ENSCLAP00000000107 ENTREZGENE
  ENSCLAP00000000107.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000000133 ENTREZGENE
  ENSCLAT00000000133.1 UniProtKB/TrEMBL
  ENSCLAT00000000134 ENTREZGENE
  ENSCLAT00000000134.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
  3.10.260.40 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  BCOR UniProtKB/TrEMBL
  PUFD UniProtKB/TrEMBL
  PUFD_som_sf UniProtKB/TrEMBL
NCBI Gene Bcor ENTREZGENE
Pfam Ank_2 UniProtKB/TrEMBL
  BCOR UniProtKB/TrEMBL
  PUFD UniProtKB/TrEMBL
PROSITE ANK_REPEAT UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
UniProt A0A8C2UHD2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2ULA7 ENTREZGENE, UniProtKB/TrEMBL