Rfx4 (regulatory factor X4) - Rat Genome Database

Name: Rfx4
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Rfx4 (regulatory factor X4) Chinchilla lanigera

Analyze

Symbol:

Rfx4

Name:

regulatory factor X4

RGD ID:

8983318

Description:

ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cilium assembly (ortholog); negative regulation of smoothened signaling pathway (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN nucleus (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

regulatory factor X, 4 (influences HLA class II expression); transcription factor RFX4

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955405	40,482,958 - 40,649,100 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955405	40,483,391 - 40,648,992 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cilium assembly (ISO)

negative regulation of smoothened signaling pathway (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

regulation of protein processing (ISO)

regulation of transcription by RNA polymerase II (ISO)

telencephalon development (ISO)

Cellular Component

nucleus (ISO)

Molecular Function

DNA-binding transcription activator activity, RNA polymerase II-specific (ISO)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (ISO)

sequence-specific double-stranded DNA binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Rfx4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955405	40,482,958 - 40,649,100 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955405	40,483,391 - 40,648,992 (+)	NCBI	ChiLan1.0	ChiLan1.0

RFX4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	106,583,004 - 106,762,803 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	106,583,004 - 106,762,803 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	106,976,782 - 107,156,581 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	105,501,163 - 105,680,711 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	105,479,499 - 105,659,047	NCBI
Celera	12	106,642,624 - 106,822,170 (+)	NCBI		Celera
Cytogenetic Map	12	q23.3	NCBI
HuRef	12	104,036,963 - 104,216,955 (+)	NCBI		HuRef
CHM1_1	12	106,942,490 - 107,122,407 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	106,546,661 - 106,726,445 (+)	NCBI		T2T-CHM13v2.0

Rfx4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	84,591,895 - 84,742,402 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	84,591,926 - 84,742,402 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	84,756,036 - 84,906,538 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	84,756,062 - 84,906,538 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	84,218,793 - 84,369,283 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	84,185,847 - 84,336,337 (+)	NCBI		MGSCv36	mm8
Celera	10	86,730,140 - 86,884,321 (+)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	41.63	NCBI

Rfx4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	20,740,760 - 20,903,355 (-)	NCBI		GRCr8
mRatBN7.2	7	18,853,065 - 19,015,378 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	18,853,322 - 19,014,967 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	7	25,831,358 - 25,909,976 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	25,808,419 - 25,907,849 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	25,966,111 - 26,038,982 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	20,976,369 - 21,052,088 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	7	16,067,975 - 16,205,907 (-)	NCBI		Celera
Cytogenetic Map	7	q13	NCBI

RFX4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	114,640,787 - 114,818,800 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	114,637,177 - 114,815,197 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	104,152,816 - 104,330,383 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	107,550,254 - 107,724,623 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	107,550,254 - 107,724,623 (+)	Ensembl	panpan1.1		panPan2

RFX4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	31,993,339 - 32,155,896 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	31,994,594 - 32,155,500 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	31,913,332 - 32,075,855 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	32,834,451 - 32,996,735 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	32,834,451 - 32,996,764 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	32,570,501 - 32,732,868 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	32,860,552 - 33,021,634 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	33,046,753 - 33,209,305 (-)	NCBI		UU_Cfam_GSD_1.0

Rfx4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	15,191,534 - 15,346,772 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936492	8,201,948 - 8,362,603 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936492	8,201,951 - 8,345,788 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

POLR3B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	13,590,851 - 13,758,567 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	13,590,845 - 13,758,913 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	13,442,393 - 13,589,186 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RFX4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	101,790,944 - 101,972,314 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	101,791,212 - 101,972,362 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	143,075,985 - 143,255,187 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rfx4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624750	2,722,696 - 2,869,668 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624750	2,722,790 - 2,869,676 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005374622	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005374623	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005374624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005374625	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01005518	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01005519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01005520	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01005521	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01005522	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01004566	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000018108 ⟹ ENSCLAP00000017930

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955405	40,482,958 - 40,649,100 (+)	Ensembl

RefSeq Acc Id:

ENSCLAT00000018109 ⟹ ENSCLAP00000017931

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955405	40,577,404 - 40,647,737 (+)	Ensembl

RefSeq Acc Id:

XM_005374622 ⟹ XP_005374679

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955405	40,499,102 - 40,648,992 (+)	NCBI

Sequence:

show sequence

GGTCACCCTGGAGAAGCCACAGCTGCCATCACACGTCCTGTGTCACCACCAGCAGAGCCCAGGG
ACAGAGAAAGGGGCCAGGGAAGATGAGCGGGAGGCGAGCTCACCCTTGGGCCAGAGGTAACAGG
AGCGGGCCAAGGCGGTGCGGTTCCACCGAGAGCTGGATTGAAAGATGTCTCAATGAAAGTGAAA
ATAAACGTTATTCCAGTCACACCTCTCTGGGGAATATTTCTAATGATGAAAATGAGGAAAAGGA
AAATAATAGAGCATCCAAGCCCCACTCCACGCCCGCCACGCTGCAGTGGCTGGAGGAAAACTAT
GAGATTGCAGAAGGCGTCTGCATTCCTCGCAGCGCCCTGTACATGCACTACCTGGATTTCTGCG
AGAAGAACGACACCCAGCCTGTCAACGCCGCCAGCTTCGGGAAGATCATAAGGCAGCAGTTTCC
ACAGCTGACCACCAGGAGACTCGGGACGCGAGGACAGTCCAAGTACCATTACTACGGCATCGCG
GTGAAGGAGAGCTCCCAGTACTACGACGTGATGTACTCCAAGAAGGGCGCAGCCTGGGTGAGCG
AGAGCGGAAAGAAGGAAGTGAGCAAGCAGACGGTGGCCTACTCGCCACGGTCCAAACTCGGGAC
GCTGCTGCCGGAGTTCCCAAATGTCAAGGACCTGAACCTGCCGGCCAGTCTGCCCGAGGAGAAG
GTTTCCACCTTCATTATGATGTACAGGACCCACTGTCAGAGGATACTGGACACCGTGATAAGAG
CCAACTTCGATGAGGTTCAGAGTTTCCTCCTGCACTTTTGGCAAGGAATGCCGCCCCACATGCT
GCCCGTGCTGGGCTCCTCCACGGTGGTGAACATCGTCGGCGTGTGTGACTCCATCCTCTACAAG
GCCATTTCCGGGGTGCTCATGCCCACCGTGCTGCAGGCGCTACCCGACAGCTTAACTCAGGTGA
TTCGCAAGTTTGCCAAGCAGCTGGACGAGTGGCTGAAAGTGGCTCTCCACGACCTCCCAGAAAA
TCTGCGAAACATCAAATTTGAATTGTCCAGAAGGTTTTCCCAAATCCTGAGACGGCAAACGTCG
CTCAATCATCTTTGCCAGGCATCCCGGACGGTGATCCACAGCGCGGACATCACGTTCCAGATGC
TGGAGGACTGGCGGAACGTGGACCTGAACAGCATCACCAAGCAGACCCTGTACACCATGGAGGA
CTCCCGCGAGGAGCACCGCAAGCTCATCATCCAGCTGTACCAGGAGTTCGACCACCTCCTGGAG
GAGCAGTCACCCATCGAGTCCTACATCGAGTGGCTGGACACCATGGTGGACCGTTGCGTCGTGA
AGGTGGCCGCCAAGAGACAAGGGTCGCTGAAGAAGGTGGCCCAGCAGTTCCTGCTGATGTGGTC
CTGCTTCGGCACCAGGGTGATCCGGGATATGACTTTGCACAGCGCCCCCAGCTTCGGGTCTTTC
CACCTCATCCACTTGATGTTCGACGACTACGTGCTGTACCTGCTGGAGTCGCTGCACTGCCAGG
AGCGGGCCAACGAGCTCATGCGAGCCATGAAGGGCGAGGGCAGCAGTGAGGTTCAGGAAGAGAT
CGTCCTGACAGAGGCAGCCCCACCAACCCCTTCGCCCGTGCCGTCGTTTTCTCCCGCAAAATCT
GCCACCTCCGTGGAGGTGCCACCTCCCTCGTCCCCTGTCAGCAACCCTTCCCCCGAGTACACCG
GCCTCAGCACTACAGGTGGGATGCAGTCCTACACATGGTCCCTGACATACACGGTGACGACGGC
TGCTGGGTCCCCGGCGGAAAGCTCCCAGCAGCTGCCCTGCATGCGCAGCACTCACGTGCCTCCC
TCCTCCGTCGCACACCGGATCCCGGTTTACCCCCACAGAGAGGAGCACGGGTACACGGGAAGCT
ATAACTACGGGAGCTATGGCAACCAACATCCTCACCCGATGCAGAGCCAGTACCCAGCCCTCCC
GCATGACACGGCCATCTCCGGGCCGCTCCACTACTCCCCGTACCACAGGAGCTCCGCCCAGTAC
CCTTTCAATAGCCCCACTTCCCGGATGGAGCCCTGCCTGATGAGCAGCACCCCCAGGCTGCACC
CCACCGCAGTCACTCCCCGGTGGCCAGAGGTGCCCACCGCCAACACGTGCTACACGAGCCCGTC
TGTGCACACCGCGAGGTACGGAAACTCTAGTGACATGTACACACCCCTGAGCACGCGCAGGAAT
TCCGAGTACGAGCACATGCAACACTTCCCTGGCTTTGCTTACATCAACGGAGAGGCCTCCACAG
GGTGGGCCAAGTGACTGCTCTCGTGGTCATCCATATTTAATGTTAATAATAATAATGATAATAA
GCCCAATACCCGCCCTCCAGAAGACTTTATCTCTATACATCGTAACTGGTGGGCAGTTCCTAGG
CACCCATTGTCCTCACGAACAGGAAGATACCCACTATGGGAGGAGTAAACGTTAGTTCAGAAAA
AGGTCTCGCCAGAAGTCACTGGGACTGGGTTCCTGGACTGTTTCTCTAGAGCACTCGCTGGGCA
GGCCGCCTGCGCCTCCCCCTCTGTCCCACAGCTCGGCTTCGTGCGGGCGAGCCCTCCCTGTAGG
CTACTTGTGTTCCTGTGGGCCCTGCGAAGCCCTGTAGTCTTGAGGGATGGATCCTGGAGATGGA
GTCTGGTTGTGTTCTCGCACGGGCACGTCACTTGCCAAGAACAGTCACCCGGCCACCTGTGTGG
TATGCCCCTCCCTCCTGGTTGCATCTCACGGCTTCCTGGAAGGCCAGGGCCCAGGGAGACGCCA
GGGACTCTAGGCTGGTTCCCTGTGCTGCTCGCATCCGTCCGCCGCGTACCTGCCTTGCCTAGAA
CAGAAGCACTGTCGGAGGGAAGAGGAGGCCTGTTCTGTTGCCTTAAGTGGACTGAGGTCCGTAG
GGGACCGGTTCTTCTATGTACAAGGGTTTGTCCTGAATTTGCACAATGGTTAGTGTCAGCAAAA
GGCGGGAGAGGGTTTGGGAAGGTTCTTTGAGAATGTGATTTGTGGCCTTGAGTATCACACTCGG
CTCTGCTGTTAACATTCTGAAGCTGTTTGGACCAAACTTTAACTTAGCACCAAGTGTGAGAGCG
ACTTTCATAGTTTCTTCATAAGACTATAATAATTTCCGACACTTTGATAGAAGAAAGATTCAGA
GCTGTGCCTTTGAGCCTATACTATACTGTGTATGTGTGGAAATAAAAAATGTATTGTACTTTTG
GGAACATTTTTTTCATAGGCATTTTTCTGTCAGATTTGTAGTAATTTGTGAGGTTTGTTAGAGA
TTAACATAGGCTTTCTTTCTGTATCATAAAATGCACCACACAATTATGGTGGACCTATTACCCT
ATGGGTAAGAAATAAATGGAAATATGACATCGGATACGTTAGCAATTGTTCTGTAAATAAAACT
TTTGATCACACCGCTCAGTGTGATAATCATGTCTACGGCTAAAATGGAGATAGTTTTATCTGTA
CAGTTGTGCAAGATGTGAATGGTTTCACACTCGAATAAAAGGTATTGAAACAA

hide sequence

RefSeq Acc Id:

XM_005374623 ⟹ XP_005374680

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955405	40,483,391 - 40,648,992 (+)	NCBI

Sequence:

show sequence

TGATCCTTTTGCGCTCTCACTCTCTGCGCCTCTCTCTCCTCCCTTCCTTCCCTCCCTCCTGGCC
TCCCCGAGCGTCTCTGGCACAGGGGATCCCCAAACATCAGGACTTTTGGGGGGCCGCCTGTGCT
GTCCATGGGAAGAGCATGCATTGTGGGTTACTGGAGGAACCCGACATGGATTCCACAGAGAGCT
GGATTGAAAGATGTCTCAATGAAAGTGAAAATAAACGTTATTCCAGTCACACCTCTCTGGGGAA
TATTTCTAATGATGAAAATGAGGAAAAGGAAAATAATAGAGCATCCAAGCCCCACTCCACGCCC
GCCACGCTGCAGTGGCTGGAGGAAAACTATGAGATTGCAGAAGGCGTCTGCATTCCTCGCAGCG
CCCTGTACATGCACTACCTGGATTTCTGCGAGAAGAACGACACCCAGCCTGTCAACGCCGCCAG
CTTCGGGAAGATCATAAGGCAGCAGTTTCCACAGCTGACCACCAGGAGACTCGGGACGCGAGGA
CAGTCCAAGTACCATTACTACGGCATCGCGGTGAAGGAGAGCTCCCAGTACTACGACGTGATGT
ACTCCAAGAAGGGCGCAGCCTGGGTGAGCGAGAGCGGAAAGAAGGAAGTGAGCAAGCAGACGGT
GGCCTACTCGCCACGGTCCAAACTCGGGACGCTGCTGCCGGAGTTCCCAAATGTCAAGGACCTG
AACCTGCCGGCCAGTCTGCCCGAGGAGAAGGTTTCCACCTTCATTATGATGTACAGGACCCACT
GTCAGAGGATACTGGACACCGTGATAAGAGCCAACTTCGATGAGGTTCAGAGTTTCCTCCTGCA
CTTTTGGCAAGGAATGCCGCCCCACATGCTGCCCGTGCTGGGCTCCTCCACGGTGGTGAACATC
GTCGGCGTGTGTGACTCCATCCTCTACAAGGCCATTTCCGGGGTGCTCATGCCCACCGTGCTGC
AGGCGCTACCCGACAGCTTAACTCAGGTGATTCGCAAGTTTGCCAAGCAGCTGGACGAGTGGCT
GAAAGTGGCTCTCCACGACCTCCCAGAAAATCTGCGAAACATCAAATTTGAATTGTCCAGAAGG
TTTTCCCAAATCCTGAGACGGCAAACGTCGCTCAATCATCTTTGCCAGGCATCCCGGACGGTGA
TCCACAGCGCGGACATCACGTTCCAGATGCTGGAGGACTGGCGGAACGTGGACCTGAACAGCAT
CACCAAGCAGACCCTGTACACCATGGAGGACTCCCGCGAGGAGCACCGCAAGCTCATCATCCAG
CTGTACCAGGAGTTCGACCACCTCCTGGAGGAGCAGTCACCCATCGAGTCCTACATCGAGTGGC
TGGACACCATGGTGGACCGTTGCGTCGTGAAGGTGGCCGCCAAGAGACAAGGGTCGCTGAAGAA
GGTGGCCCAGCAGTTCCTGCTGATGTGGTCCTGCTTCGGCACCAGGGTGATCCGGGATATGACT
TTGCACAGCGCCCCCAGCTTCGGGTCTTTCCACCTCATCCACTTGATGTTCGACGACTACGTGC
TGTACCTGCTGGAGTCGCTGCACTGCCAGGAGCGGGCCAACGAGCTCATGCGAGCCATGAAGGG
CGAGGGCAGCAGTGAGGTTCAGGAAGAGATCGTCCTGACAGAGGCAGCCCCACCAACCCCTTCG
CCCGTGCCGTCGTTTTCTCCCGCAAAATCTGCCACCTCCGTGGAGGTGCCACCTCCCTCGTCCC
CTGTCAGCAACCCTTCCCCCGAGTACACCGGCCTCAGCACTACAGGTGGGATGCAGTCCTACAC
ATGGTCCCTGACATACACGGTGACGACGGCTGCTGGGTCCCCGGCGGAAAGCTCCCAGCAGCTG
CCCTGCATGCGCAGCACTCACGTGCCTCCCTCCTCCGTCGCACACCGGATCCCGGTTTACCCCC
ACAGAGAGGAGCACGGGTACACGGGAAGCTATAACTACGGGAGCTATGGCAACCAACATCCTCA
CCCGATGCAGAGCCAGTACCCAGCCCTCCCGCATGACACGGCCATCTCCGGGCCGCTCCACTAC
TCCCCGTACCACAGGAGCTCCGCCCAGTACCCTTTCAATAGCCCCACTTCCCGGATGGAGCCCT
GCCTGATGAGCAGCACCCCCAGGCTGCACCCCACCGCAGTCACTCCCCGGTGGCCAGAGGTGCC
CACCGCCAACACGTGCTACACGAGCCCGTCTGTGCACACCGCGAGGTACGGAAACTCTAGTGAC
ATGTACACACCCCTGAGCACGCGCAGGAATTCCGAGTACGAGCACATGCAACACTTCCCTGGCT
TTGCTTACATCAACGGAGAGGCCTCCACAGGGTGGGCCAAGTGACTGCTCTCGTGGTCATCCAT
ATTTAATGTTAATAATAATAATGATAATAAGCCCAATACCCGCCCTCCAGAAGACTTTATCTCT
ATACATCGTAACTGGTGGGCAGTTCCTAGGCACCCATTGTCCTCACGAACAGGAAGATACCCAC
TATGGGAGGAGTAAACGTTAGTTCAGAAAAAGGTCTCGCCAGAAGTCACTGGGACTGGGTTCCT
GGACTGTTTCTCTAGAGCACTCGCTGGGCAGGCCGCCTGCGCCTCCCCCTCTGTCCCACAGCTC
GGCTTCGTGCGGGCGAGCCCTCCCTGTAGGCTACTTGTGTTCCTGTGGGCCCTGCGAAGCCCTG
TAGTCTTGAGGGATGGATCCTGGAGATGGAGTCTGGTTGTGTTCTCGCACGGGCACGTCACTTG
CCAAGAACAGTCACCCGGCCACCTGTGTGGTATGCCCCTCCCTCCTGGTTGCATCTCACGGCTT
CCTGGAAGGCCAGGGCCCAGGGAGACGCCAGGGACTCTAGGCTGGTTCCCTGTGCTGCTCGCAT
CCGTCCGCCGCGTACCTGCCTTGCCTAGAACAGAAGCACTGTCGGAGGGAAGAGGAGGCCTGTT
CTGTTGCCTTAAGTGGACTGAGGTCCGTAGGGGACCGGTTCTTCTATGTACAAGGGTTTGTCCT
GAATTTGCACAATGGTTAGTGTCAGCAAAAGGCGGGAGAGGGTTTGGGAAGGTTCTTTGAGAAT
GTGATTTGTGGCCTTGAGTATCACACTCGGCTCTGCTGTTAACATTCTGAAGCTGTTTGGACCA
AACTTTAACTTAGCACCAAGTGTGAGAGCGACTTTCATAGTTTCTTCATAAGACTATAATAATT
TCCGACACTTTGATAGAAGAAAGATTCAGAGCTGTGCCTTTGAGCCTATACTATACTGTGTATG
TGTGGAAATAAAAAATGTATTGTACTTTTGGGAACATTTTTTTCATAGGCATTTTTCTGTCAGA
TTTGTAGTAATTTGTGAGGTTTGTTAGAGATTAACATAGGCTTTCTTTCTGTATCATAAAATGC
ACCACACAATTATGGTGGACCTATTACCCTATGGGTAAGAAATAAATGGAAATATGACATCGGA
TACGTTAGCAATTGTTCTGTAAATAAAACTTTTGATCACACCGCTCAGTGTGATAATCATGTCT
ACGGCTAAAATGGAGATAGTTTTATCTGTACAGTTGTGCAAGATGTGAATGGTTTCACACTCGA
ATAAAAGGTATTGAAACAA

hide sequence

RefSeq Acc Id:

XM_005374624 ⟹ XP_005374681

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955405	40,499,102 - 40,648,992 (+)	NCBI

Sequence:

show sequence

GGTCACCCTGGAGAAGCCACAGCTGCCATCACACGTCCTGTGTCACCACCAGCAGAGCCCAGGG
ACAGAGAAAGGGGCCAGGGAAGATGAGCGGGAGGCGAGCTCACCCTTGGGCCAGAGAGAGCTGG
ATTGAAAGATGTCTCAATGAAAGTGAAAATAAACGTTATTCCAGTCACACCTCTCTGGGGAATA
TTTCTAATGATGAAAATGAGGAAAAGGAAAATAATAGAGCATCCAAGCCCCACTCCACGCCCGC
CACGCTGCAGTGGCTGGAGGAAAACTATGAGATTGCAGAAGGCGTCTGCATTCCTCGCAGCGCC
CTGTACATGCACTACCTGGATTTCTGCGAGAAGAACGACACCCAGCCTGTCAACGCCGCCAGCT
TCGGGAAGATCATAAGGCAGCAGTTTCCACAGCTGACCACCAGGAGACTCGGGACGCGAGGACA
GTCCAAGTACCATTACTACGGCATCGCGGTGAAGGAGAGCTCCCAGTACTACGACGTGATGTAC
TCCAAGAAGGGCGCAGCCTGGGTGAGCGAGAGCGGAAAGAAGGAAGTGAGCAAGCAGACGGTGG
CCTACTCGCCACGGTCCAAACTCGGGACGCTGCTGCCGGAGTTCCCAAATGTCAAGGACCTGAA
CCTGCCGGCCAGTCTGCCCGAGGAGAAGGTTTCCACCTTCATTATGATGTACAGGACCCACTGT
CAGAGGATACTGGACACCGTGATAAGAGCCAACTTCGATGAGGTTCAGAGTTTCCTCCTGCACT
TTTGGCAAGGAATGCCGCCCCACATGCTGCCCGTGCTGGGCTCCTCCACGGTGGTGAACATCGT
CGGCGTGTGTGACTCCATCCTCTACAAGGCCATTTCCGGGGTGCTCATGCCCACCGTGCTGCAG
GCGCTACCCGACAGCTTAACTCAGGTGATTCGCAAGTTTGCCAAGCAGCTGGACGAGTGGCTGA
AAGTGGCTCTCCACGACCTCCCAGAAAATCTGCGAAACATCAAATTTGAATTGTCCAGAAGGTT
TTCCCAAATCCTGAGACGGCAAACGTCGCTCAATCATCTTTGCCAGGCATCCCGGACGGTGATC
CACAGCGCGGACATCACGTTCCAGATGCTGGAGGACTGGCGGAACGTGGACCTGAACAGCATCA
CCAAGCAGACCCTGTACACCATGGAGGACTCCCGCGAGGAGCACCGCAAGCTCATCATCCAGCT
GTACCAGGAGTTCGACCACCTCCTGGAGGAGCAGTCACCCATCGAGTCCTACATCGAGTGGCTG
GACACCATGGTGGACCGTTGCGTCGTGAAGGTGGCCGCCAAGAGACAAGGGTCGCTGAAGAAGG
TGGCCCAGCAGTTCCTGCTGATGTGGTCCTGCTTCGGCACCAGGGTGATCCGGGATATGACTTT
GCACAGCGCCCCCAGCTTCGGGTCTTTCCACCTCATCCACTTGATGTTCGACGACTACGTGCTG
TACCTGCTGGAGTCGCTGCACTGCCAGGAGCGGGCCAACGAGCTCATGCGAGCCATGAAGGGCG
AGGGCAGCAGTGAGGTTCAGGAAGAGATCGTCCTGACAGAGGCAGCCCCACCAACCCCTTCGCC
CGTGCCGTCGTTTTCTCCCGCAAAATCTGCCACCTCCGTGGAGGTGCCACCTCCCTCGTCCCCT
GTCAGCAACCCTTCCCCCGAGTACACCGGCCTCAGCACTACAGGTGGGATGCAGTCCTACACAT
GGTCCCTGACATACACGGTGACGACGGCTGCTGGGTCCCCGGCGGAAAGCTCCCAGCAGCTGCC
CTGCATGCGCAGCACTCACGTGCCTCCCTCCTCCGTCGCACACCGGATCCCGGTTTACCCCCAC
AGAGAGGAGCACGGGTACACGGGAAGCTATAACTACGGGAGCTATGGCAACCAACATCCTCACC
CGATGCAGAGCCAGTACCCAGCCCTCCCGCATGACACGGCCATCTCCGGGCCGCTCCACTACTC
CCCGTACCACAGGAGCTCCGCCCAGTACCCTTTCAATAGCCCCACTTCCCGGATGGAGCCCTGC
CTGATGAGCAGCACCCCCAGGCTGCACCCCACCGCAGTCACTCCCCGGTGGCCAGAGGTGCCCA
CCGCCAACACGTGCTACACGAGCCCGTCTGTGCACACCGCGAGGTACGGAAACTCTAGTGACAT
GTACACACCCCTGAGCACGCGCAGGAATTCCGAGTACGAGCACATGCAACACTTCCCTGGCTTT
GCTTACATCAACGGAGAGGCCTCCACAGGGTGGGCCAAGTGACTGCTCTCGTGGTCATCCATAT
TTAATGTTAATAATAATAATGATAATAAGCCCAATACCCGCCCTCCAGAAGACTTTATCTCTAT
ACATCGTAACTGGTGGGCAGTTCCTAGGCACCCATTGTCCTCACGAACAGGAAGATACCCACTA
TGGGAGGAGTAAACGTTAGTTCAGAAAAAGGTCTCGCCAGAAGTCACTGGGACTGGGTTCCTGG
ACTGTTTCTCTAGAGCACTCGCTGGGCAGGCCGCCTGCGCCTCCCCCTCTGTCCCACAGCTCGG
CTTCGTGCGGGCGAGCCCTCCCTGTAGGCTACTTGTGTTCCTGTGGGCCCTGCGAAGCCCTGTA
GTCTTGAGGGATGGATCCTGGAGATGGAGTCTGGTTGTGTTCTCGCACGGGCACGTCACTTGCC
AAGAACAGTCACCCGGCCACCTGTGTGGTATGCCCCTCCCTCCTGGTTGCATCTCACGGCTTCC
TGGAAGGCCAGGGCCCAGGGAGACGCCAGGGACTCTAGGCTGGTTCCCTGTGCTGCTCGCATCC
GTCCGCCGCGTACCTGCCTTGCCTAGAACAGAAGCACTGTCGGAGGGAAGAGGAGGCCTGTTCT
GTTGCCTTAAGTGGACTGAGGTCCGTAGGGGACCGGTTCTTCTATGTACAAGGGTTTGTCCTGA
ATTTGCACAATGGTTAGTGTCAGCAAAAGGCGGGAGAGGGTTTGGGAAGGTTCTTTGAGAATGT
GATTTGTGGCCTTGAGTATCACACTCGGCTCTGCTGTTAACATTCTGAAGCTGTTTGGACCAAA
CTTTAACTTAGCACCAAGTGTGAGAGCGACTTTCATAGTTTCTTCATAAGACTATAATAATTTC
CGACACTTTGATAGAAGAAAGATTCAGAGCTGTGCCTTTGAGCCTATACTATACTGTGTATGTG
TGGAAATAAAAAATGTATTGTACTTTTGGGAACATTTTTTTCATAGGCATTTTTCTGTCAGATT
TGTAGTAATTTGTGAGGTTTGTTAGAGATTAACATAGGCTTTCTTTCTGTATCATAAAATGCAC
CACACAATTATGGTGGACCTATTACCCTATGGGTAAGAAATAAATGGAAATATGACATCGGATA
CGTTAGCAATTGTTCTGTAAATAAAACTTTTGATCACACCGCTCAGTGTGATAATCATGTCTAC
GGCTAAAATGGAGATAGTTTTATCTGTACAGTTGTGCAAGATGTGAATGGTTTCACACTCGAAT
AAAAGGTATTGAAACAA

hide sequence

RefSeq Acc Id:

XM_005374625 ⟹ XP_005374682

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955405	40,577,327 - 40,648,992 (+)	NCBI

Sequence:

show sequence

ACAGTTGGGAAGTAGAAGGCGCAGACTGCAGGCGCCAGCCCAGTGCAGAGAACTTCCCATACTG
GTGTCGGCTCAAGATGAACTGGCCTGTCTACGCAGGGCCCCAGTTCTTCCACCCGGGAGGCACC
CAGATAGAGGCGAGCTGCCCACTGGGCAGAAGTATCTCCGAATGGTACCATTACTACGGCATCG
CGGTGAAGGAGAGCTCCCAGTACTACGACGTGATGTACTCCAAGAAGGGCGCAGCCTGGGTGAG
CGAGAGCGGAAAGAAGGAAGTGAGCAAGCAGACGGTGGCCTACTCGCCACGGTCCAAACTCGGG
ACGCTGCTGCCGGAGTTCCCAAATGTCAAGGACCTGAACCTGCCGGCCAGTCTGCCCGAGGAGA
AGGTTTCCACCTTCATTATGATGTACAGGACCCACTGTCAGAGGATACTGGACACCGTGATAAG
AGCCAACTTCGATGAGGTTCAGAGTTTCCTCCTGCACTTTTGGCAAGGAATGCCGCCCCACATG
CTGCCCGTGCTGGGCTCCTCCACGGTGGTGAACATCGTCGGCGTGTGTGACTCCATCCTCTACA
AGGCCATTTCCGGGGTGCTCATGCCCACCGTGCTGCAGGCGCTACCCGACAGCTTAACTCAGGT
GATTCGCAAGTTTGCCAAGCAGCTGGACGAGTGGCTGAAAGTGGCTCTCCACGACCTCCCAGAA
AATCTGCGAAACATCAAATTTGAATTGTCCAGAAGGTTTTCCCAAATCCTGAGACGGCAAACGT
CGCTCAATCATCTTTGCCAGGCATCCCGGACGGTGATCCACAGCGCGGACATCACGTTCCAGAT
GCTGGAGGACTGGCGGAACGTGGACCTGAACAGCATCACCAAGCAGACCCTGTACACCATGGAG
GACTCCCGCGAGGAGCACCGCAAGCTCATCATCCAGCTGTACCAGGAGTTCGACCACCTCCTGG
AGGAGCAGTCACCCATCGAGTCCTACATCGAGTGGCTGGACACCATGGTGGACCGTTGCGTCGT
GAAGGTGGCCGCCAAGAGACAAGGGTCGCTGAAGAAGGTGGCCCAGCAGTTCCTGCTGATGTGG
TCCTGCTTCGGCACCAGGGTGATCCGGGATATGACTTTGCACAGCGCCCCCAGCTTCGGGTCTT
TCCACCTCATCCACTTGATGTTCGACGACTACGTGCTGTACCTGCTGGAGTCGCTGCACTGCCA
GGAGCGGGCCAACGAGCTCATGCGAGCCATGAAGGGCGAGGGCAGCAGTGAGGTTCAGGAAGAG
ATCGTCCTGACAGAGGCAGCCCCACCAACCCCTTCGCCCGTGCCGTCGTTTTCTCCCGCAAAAT
CTGCCACCTCCGTGGAGGTGCCACCTCCCTCGTCCCCTGTCAGCAACCCTTCCCCCGAGTACAC
CGGCCTCAGCACTACAGGTGGGATGCAGTCCTACACATGGTCCCTGACATACACGGTGACGACG
GCTGCTGGGTCCCCGGCGGAAAGCTCCCAGCAGCTGCCCTGCATGCGCAGCACTCACGTGCCTC
CCTCCTCCGTCGCACACCGGATCCCGGTTTACCCCCACAGAGAGGAGCACGGGTACACGGGAAG
CTATAACTACGGGAGCTATGGCAACCAACATCCTCACCCGATGCAGAGCCAGTACCCAGCCCTC
CCGCATGACACGGCCATCTCCGGGCCGCTCCACTACTCCCCGTACCACAGGAGCTCCGCCCAGT
ACCCTTTCAATAGCCCCACTTCCCGGATGGAGCCCTGCCTGATGAGCAGCACCCCCAGGCTGCA
CCCCACCGCAGTCACTCCCCGGTGGCCAGAGGTGCCCACCGCCAACACGTGCTACACGAGCCCG
TCTGTGCACACCGCGAGGTACGGAAACTCTAGTGACATGTACACACCCCTGAGCACGCGCAGGA
ATTCCGAGTACGAGCACATGCAACACTTCCCTGGCTTTGCTTACATCAACGGAGAGGCCTCCAC
AGGGTGGGCCAAGTGACTGCTCTCGTGGTCATCCATATTTAATGTTAATAATAATAATGATAAT
AAGCCCAATACCCGCCCTCCAGAAGACTTTATCTCTATACATCGTAACTGGTGGGCAGTTCCTA
GGCACCCATTGTCCTCACGAACAGGAAGATACCCACTATGGGAGGAGTAAACGTTAGTTCAGAA
AAAGGTCTCGCCAGAAGTCACTGGGACTGGGTTCCTGGACTGTTTCTCTAGAGCACTCGCTGGG
CAGGCCGCCTGCGCCTCCCCCTCTGTCCCACAGCTCGGCTTCGTGCGGGCGAGCCCTCCCTGTA
GGCTACTTGTGTTCCTGTGGGCCCTGCGAAGCCCTGTAGTCTTGAGGGATGGATCCTGGAGATG
GAGTCTGGTTGTGTTCTCGCACGGGCACGTCACTTGCCAAGAACAGTCACCCGGCCACCTGTGT
GGTATGCCCCTCCCTCCTGGTTGCATCTCACGGCTTCCTGGAAGGCCAGGGCCCAGGGAGACGC
CAGGGACTCTAGGCTGGTTCCCTGTGCTGCTCGCATCCGTCCGCCGCGTACCTGCCTTGCCTAG
AACAGAAGCACTGTCGGAGGGAAGAGGAGGCCTGTTCTGTTGCCTTAAGTGGACTGAGGTCCGT
AGGGGACCGGTTCTTCTATGTACAAGGGTTTGTCCTGAATTTGCACAATGGTTAGTGTCAGCAA
AAGGCGGGAGAGGGTTTGGGAAGGTTCTTTGAGAATGTGATTTGTGGCCTTGAGTATCACACTC
GGCTCTGCTGTTAACATTCTGAAGCTGTTTGGACCAAACTTTAACTTAGCACCAAGTGTGAGAG
CGACTTTCATAGTTTCTTCATAAGACTATAATAATTTCCGACACTTTGATAGAAGAAAGATTCA
GAGCTGTGCCTTTGAGCCTATACTATACTGTGTATGTGTGGAAATAAAAAATGTATTGTACTTT
TGGGAACATTTTTTTCATAGGCATTTTTCTGTCAGATTTGTAGTAATTTGTGAGGTTTGTTAGA
GATTAACATAGGCTTTCTTTCTGTATCATAAAATGCACCACACAATTATGGTGGACCTATTACC
CTATGGGTAAGAAATAAATGGAAATATGACATCGGATACGTTAGCAATTGTTCTGTAAATAAAA
CTTTTGATCACACCGCTCAGTGTGATAATCATGTCTACGGCTAAAATGGAGATAGTTTTATCTG
TACAGTTGTGCAAGATGTGAATGGTTTCACACTCGAATAAAAGGTATTGAAACAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005374679	(Get FASTA)	NCBI Sequence Viewer
	XP_005374680	(Get FASTA)	NCBI Sequence Viewer
	XP_005374681	(Get FASTA)	NCBI Sequence Viewer
	XP_005374682	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000017930
	ENSCLAP00000017930.1
	ENSCLAP00000017931
	ENSCLAP00000017931.1

RefSeq Acc Id:	XP_005374680 ⟸ XM_005374623
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2VMQ6 (UniProtKB/TrEMBL), A0A8C2VMT4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MHCGLLEEPDMDSTESWIERCLNESENKRYSSHTSLGNISNDENEEKENNRASKPHSTPATLQW LEENYEIAEGVCIPRSALYMHYLDFCEKNDTQPVNAASFGKIIRQQFPQLTTRRLGTRGQSKYH YYGIAVKESSQYYDVMYSKKGAAWVSESGKKEVSKQTVAYSPRSKLGTLLPEFPNVKDLNLPAS LPEEKVSTFIMMYRTHCQRILDTVIRANFDEVQSFLLHFWQGMPPHMLPVLGSSTVVNIVGVCD SILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRFSQIL RRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSREEHRKLIIQLYQEF DHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGTRVIRDMTLHSAP SFGSFHLIHLMFDDYVLYLLESLHCQERANELMRAMKGEGSSEVQEEIVLTEAAPPTPSPVPSF SPAKSATSVEVPPPSSPVSNPSPEYTGLSTTGGMQSYTWSLTYTVTTAAGSPAESSQQLPCMRS THVPPSSVAHRIPVYPHREEHGYTGSYNYGSYGNQHPHPMQSQYPALPHDTAISGPLHYSPYHR SSAQYPFNSPTSRMEPCLMSSTPRLHPTAVTPRWPEVPTANTCYTSPSVHTARYGNSSDMYTPL STRRNSEYEHMQHFPGFAYINGEASTGWAK hide sequence

RefSeq Acc Id:	XP_005374679 ⟸ XM_005374622
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2VMT4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSGRRAHPWARGNRSGPRRCGSTESWIERCLNESENKRYSSHTSLGNISNDENEEKENNRASKP HSTPATLQWLEENYEIAEGVCIPRSALYMHYLDFCEKNDTQPVNAASFGKIIRQQFPQLTTRRL GTRGQSKYHYYGIAVKESSQYYDVMYSKKGAAWVSESGKKEVSKQTVAYSPRSKLGTLLPEFPN VKDLNLPASLPEEKVSTFIMMYRTHCQRILDTVIRANFDEVQSFLLHFWQGMPPHMLPVLGSST VVNIVGVCDSILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFE LSRRFSQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSREEHRK LIIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGTRVI RDMTLHSAPSFGSFHLIHLMFDDYVLYLLESLHCQERANELMRAMKGEGSSEVQEEIVLTEAAP PTPSPVPSFSPAKSATSVEVPPPSSPVSNPSPEYTGLSTTGGMQSYTWSLTYTVTTAAGSPAES SQQLPCMRSTHVPPSSVAHRIPVYPHREEHGYTGSYNYGSYGNQHPHPMQSQYPALPHDTAISG PLHYSPYHRSSAQYPFNSPTSRMEPCLMSSTPRLHPTAVTPRWPEVPTANTCYTSPSVHTARYG NSSDMYTPLSTRRNSEYEHMQHFPGFAYINGEASTGWAK hide sequence

RefSeq Acc Id:	XP_005374681 ⟸ XM_005374624
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C2VMT4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSGRRAHPWARESWIERCLNESENKRYSSHTSLGNISNDENEEKENNRASKPHSTPATLQWLEE NYEIAEGVCIPRSALYMHYLDFCEKNDTQPVNAASFGKIIRQQFPQLTTRRLGTRGQSKYHYYG IAVKESSQYYDVMYSKKGAAWVSESGKKEVSKQTVAYSPRSKLGTLLPEFPNVKDLNLPASLPE EKVSTFIMMYRTHCQRILDTVIRANFDEVQSFLLHFWQGMPPHMLPVLGSSTVVNIVGVCDSIL YKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRFSQILRRQ TSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDSREEHRKLIIQLYQEFDHL LEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGTRVIRDMTLHSAPSFG SFHLIHLMFDDYVLYLLESLHCQERANELMRAMKGEGSSEVQEEIVLTEAAPPTPSPVPSFSPA KSATSVEVPPPSSPVSNPSPEYTGLSTTGGMQSYTWSLTYTVTTAAGSPAESSQQLPCMRSTHV PPSSVAHRIPVYPHREEHGYTGSYNYGSYGNQHPHPMQSQYPALPHDTAISGPLHYSPYHRSSA QYPFNSPTSRMEPCLMSSTPRLHPTAVTPRWPEVPTANTCYTSPSVHTARYGNSSDMYTPLSTR RNSEYEHMQHFPGFAYINGEASTGWAK hide sequence

RefSeq Acc Id:	XP_005374682 ⟸ XM_005374625
- Peptide Label:	isoform X4
- UniProtKB:	A0A8C2VMT4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNWPVYAGPQFFHPGGTQIEASCPLGRSISEWYHYYGIAVKESSQYYDVMYSKKGAAWVSESGK KEVSKQTVAYSPRSKLGTLLPEFPNVKDLNLPASLPEEKVSTFIMMYRTHCQRILDTVIRANFD EVQSFLLHFWQGMPPHMLPVLGSSTVVNIVGVCDSILYKAISGVLMPTVLQALPDSLTQVIRKF AKQLDEWLKVALHDLPENLRNIKFELSRRFSQILRRQTSLNHLCQASRTVIHSADITFQMLEDW RNVDLNSITKQTLYTMEDSREEHRKLIIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAA KRQGSLKKVAQQFLLMWSCFGTRVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLESLHCQERAN ELMRAMKGEGSSEVQEEIVLTEAAPPTPSPVPSFSPAKSATSVEVPPPSSPVSNPSPEYTGLST TGGMQSYTWSLTYTVTTAAGSPAESSQQLPCMRSTHVPPSSVAHRIPVYPHREEHGYTGSYNYG SYGNQHPHPMQSQYPALPHDTAISGPLHYSPYHRSSAQYPFNSPTSRMEPCLMSSTPRLHPTAV TPRWPEVPTANTCYTSPSVHTARYGNSSDMYTPLSTRRNSEYEHMQHFPGFAYINGEASTGWAK hide sequence

RefSeq Acc Id:

ENSCLAP00000017930 ⟸ ENSCLAT00000018108

RefSeq Acc Id:

ENSCLAP00000017931 ⟸ ENSCLAT00000018109

Protein Domains

RFX-type winged-helix

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000012301	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000018108	ENTREZGENE
	ENSCLAT00000018108.1	UniProtKB/TrEMBL
	ENSCLAT00000018109	ENTREZGENE
	ENSCLAT00000018109.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.10	UniProtKB/TrEMBL
InterPro	DNA-bd_RFX	UniProtKB/TrEMBL
	RFX-like	UniProtKB/TrEMBL
	WH-like_DNA-bd_sf	UniProtKB/TrEMBL
	WH_DNA-bd_sf	UniProtKB/TrEMBL
NCBI Gene	Rfx4	ENTREZGENE
PANTHER	PTHR12619	UniProtKB/TrEMBL
	TRANSCRIPTION FACTOR RFX4	UniProtKB/TrEMBL
Pfam	RFX_DNA_binding	UniProtKB/TrEMBL
PROSITE	RFX_DBD	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46785	UniProtKB/TrEMBL
UniProt	A0A8C2VMQ6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2VMT4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-16	Rfx4	regulatory factor X4		regulatory factor X, 4 (influences HLA class II expression)	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar