Papss2 (3'-phosphoadenosine 5'-phosphosulfate synthase 2) - Rat Genome Database

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Gene: Papss2 (3'-phosphoadenosine 5'-phosphosulfate synthase 2) Chinchilla lanigera
Analyze
Symbol: Papss2
Name: 3'-phosphoadenosine 5'-phosphosulfate synthase 2
RGD ID: 8982731
Description: ENCODES a protein that exhibits adenylylsulfate kinase activity (ortholog); sulfate adenylyltransferase (ATP) activity (ortholog); INVOLVED IN 3'-phosphoadenosine 5'-phosphosulfate biosynthetic process (ortholog); blood coagulation (ortholog); bone development (ortholog); PARTICIPATES IN sulfite oxidase deficiency pathway; ASSOCIATED WITH brachyolmia (ortholog); genetic disease (ortholog); juvenile polyposis syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554255,187,952 - 5,258,955 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554255,186,232 - 5,259,080 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Papss2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554255,187,952 - 5,258,955 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554255,186,232 - 5,259,080 (-)NCBIChiLan1.0ChiLan1.0
PAPSS2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381087,659,878 - 87,747,705 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1087,659,613 - 87,747,705 (+)EnsemblGRCh38hg38GRCh38
GRCh371089,419,635 - 89,507,462 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361089,409,456 - 89,497,442 (+)NCBINCBI36Build 36hg18NCBI36
Build 341089,409,607 - 89,496,142NCBI
Celera1083,166,000 - 83,253,966 (+)NCBICelera
Cytogenetic Map10q23.2-q23.31NCBI
HuRef1083,054,540 - 83,142,617 (+)NCBIHuRef
CHM1_11089,701,783 - 89,789,765 (+)NCBICHM1_1
T2T-CHM13v2.01088,543,727 - 88,631,613 (+)NCBIT2T-CHM13v2.0
Papss2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391932,573,072 - 32,644,587 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1932,573,190 - 32,644,587 (+)EnsemblGRCm39 Ensembl
GRCm381932,595,669 - 32,667,187 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1932,595,790 - 32,667,187 (+)EnsemblGRCm38mm10GRCm38
MGSCv371932,694,495 - 32,741,677 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361932,686,002 - 32,733,184 (+)NCBIMGSCv36mm8
Celera1933,402,870 - 33,450,031 (+)NCBICelera
Cytogenetic Map19C1NCBI
cM Map1927.46NCBI
Papss2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81239,867,597 - 239,952,614 (+)NCBIGRCr8
mRatBN7.21230,454,314 - 230,539,332 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1230,454,426 - 230,539,331 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1238,827,264 - 238,914,193 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01245,756,967 - 245,843,895 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01238,595,075 - 238,682,007 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01251,145,264 - 251,230,716 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1251,145,253 - 251,230,715 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01258,376,054 - 258,461,337 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41236,592,414 - 236,677,379 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11236,796,239 - 236,839,791 (+)NCBI
Celera1227,570,258 - 227,654,408 (+)NCBICelera
Cytogenetic Map1q52NCBI
PAPSS2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2899,675,589 - 99,764,891 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11099,682,336 - 99,770,207 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01084,383,936 - 84,471,745 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11087,890,631 - 87,977,839 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1087,890,631 - 87,977,839 (+)Ensemblpanpan1.1panPan2
PAPSS2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12637,725,205 - 37,745,103 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2637,725,616 - 37,743,928 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2637,579,442 - 37,627,983 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02639,227,070 - 39,275,831 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12637,134,164 - 37,182,464 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02636,715,608 - 36,764,348 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02637,955,064 - 38,003,810 (+)NCBIUU_Cfam_GSD_1.0
Papss2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721377,276,657 - 77,356,538 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367351,436,153 - 1,516,378 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367351,437,108 - 1,516,382 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PAPSS2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1499,685,578 - 99,808,381 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11499,718,299 - 99,816,346 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214108,701,055 - 108,789,588 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PAPSS2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1981,102,477 - 81,191,951 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl981,102,520 - 81,190,230 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604841,763,494 - 41,853,076 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Papss2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479113,789,584 - 13,866,543 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479113,789,539 - 13,866,551 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000011656   ⟹   ENSCLAP00000011519
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554255,187,952 - 5,258,955 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000011657   ⟹   ENSCLAP00000011520
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554255,187,952 - 5,258,955 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000011658   ⟹   ENSCLAP00000011521
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554255,187,952 - 5,249,594 (-)Ensembl
RefSeq Acc Id: XM_005385890   ⟹   XP_005385947
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554255,186,232 - 5,259,080 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005385947 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000011519
  ENSCLAP00000011519.1
  ENSCLAP00000011520.1
  ENSCLAP00000011521.1
Reference Protein Sequences
RefSeq Acc Id: XP_005385947   ⟸   XM_005385890
- UniProtKB: A0A8C2V7Y0 (UniProtKB/TrEMBL),   A0A8C2YNF7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000011521   ⟸   ENSCLAT00000011658
RefSeq Acc Id: ENSCLAP00000011520   ⟸   ENSCLAT00000011657
RefSeq Acc Id: ENSCLAP00000011519   ⟸   ENSCLAT00000011656
Protein Domains
ATP-sulfurylase PUA-like   Sulphate adenylyltransferase catalytic


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007940 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000011656 ENTREZGENE
  ENSCLAT00000011656.1 UniProtKB/TrEMBL
  ENSCLAT00000011657.1 UniProtKB/TrEMBL
  ENSCLAT00000011658.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
  3.40.50.620 UniProtKB/TrEMBL
  Sulfate adenylyltransferase UniProtKB/TrEMBL
InterPro APS_kinase UniProtKB/TrEMBL
  ATP-Sase_PUA-like_dom UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  PUA-like_sf UniProtKB/TrEMBL
  Rossmann-like_a/b/a_fold UniProtKB/TrEMBL
  Sulfurylase_cat_dom UniProtKB/TrEMBL
  Sulphate_adenylyltransferase UniProtKB/TrEMBL
NCBI Gene Papss2 ENTREZGENE
PANTHER BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE UniProtKB/TrEMBL
  BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE 2 UniProtKB/TrEMBL
Pfam APS_kinase UniProtKB/TrEMBL
  ATP-sulfurylase UniProtKB/TrEMBL
  PUA_2 UniProtKB/TrEMBL
Superfamily-SCOP Nucleotidylyl transferase UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
  SSF88697 UniProtKB/TrEMBL
UniProt A0A8C2V7Y0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YNF6_CHILA UniProtKB/TrEMBL
  A0A8C2YNF7 ENTREZGENE, UniProtKB/TrEMBL