Fcgbp (Fc gamma binding protein) - Rat Genome Database

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Gene: Fcgbp (Fc gamma binding protein) Chinchilla lanigera
Analyze
Symbol: Fcgbp
Name: Fc gamma binding protein
RGD ID: 8982645
Description: ASSOCIATED WITH Carpenter Syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); craniosynostosis (ortholog); FOUND IN extracellular matrix (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555781,131,446 - 1,169,440 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Fcgbp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555781,131,446 - 1,169,440 (+)NCBIChiLan1.0ChiLan1.0
FCGBP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381939,863,323 - 39,934,634 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1939,863,323 - 39,934,626 (-)EnsemblGRCh38hg38GRCh38
GRCh371940,353,963 - 40,440,533 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361945,045,803 - 45,132,373 (-)NCBINCBI36Build 36hg18NCBI36
Build 341945,045,810 - 45,132,373NCBI
Cytogenetic Map19q13.2NCBI
HuRef1936,800,698 - 36,877,075 (-)NCBIHuRef
CHM1_11940,355,432 - 40,440,577 (-)NCBICHM1_1
T2T-CHM13v2.01942,668,261 - 42,770,240 (-)NCBIT2T-CHM13v2.0
Fcgbp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39727,770,661 - 27,820,289 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl727,770,661 - 27,820,287 (+)EnsemblGRCm39 Ensembl
GRCm38728,071,236 - 28,120,864 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl728,071,236 - 28,120,862 (+)EnsemblGRCm38mm10GRCm38
MGSCv37728,856,255 - 28,905,883 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36725,005,140 - 25,021,956 (+)NCBIMGSCv36mm8
Celera722,637,660 - 22,682,257 (+)NCBICelera
Cytogenetic Map7A3NCBI
cM Map716.26NCBI
Fcgbp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8192,502,461 - 92,540,658 (+)NCBIGRCr8
mRatBN7.2183,374,979 - 83,413,082 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl183,372,127 - 83,413,083 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx188,785,465 - 88,823,226 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0197,243,727 - 97,281,701 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0190,541,321 - 90,579,089 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0185,003,280 - 85,046,840 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl185,003,280 - 85,046,840 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0186,219,979 - 86,263,136 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4183,177,411 - 83,215,268 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera177,774,442 - 77,813,132 (+)NCBICelera
Cytogenetic Map1q21NCBI
FCGBP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22046,092,094 - 46,198,470 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11947,962,738 - 48,068,623 (-)NCBINHGRI_mPanPan1
PanPan1.11945,442,588 - 45,513,900 (-)NCBIpanpan1.1PanPan1.1panPan2
FCGBP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11113,586,795 - 113,625,932 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1112,990,665 - 113,030,265 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01114,187,099 - 114,225,977 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11113,745,690 - 113,784,640 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01113,378,816 - 113,418,319 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01114,372,833 - 114,412,585 (+)NCBIUU_Cfam_GSD_1.0
Fcgbp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934914,030,607 - 14,066,730 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366612,458,960 - 2,494,793 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FCGBP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1648,331,753 - 48,375,099 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2644,123,660 - 44,154,998 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FCGBP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1634,396,171 - 34,458,125 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607312,471,807 - 12,547,862 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fcgbp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462492572,108 - 110,665 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005414081   ⟹   XP_005414138
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555781,131,446 - 1,169,440 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005414082   ⟹   XP_005414139
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555781,131,448 - 1,169,440 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005414138 (Get FASTA)   NCBI Sequence Viewer  
  XP_005414139 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000001666
  ENSCLAP00000001666.1
Reference Protein Sequences
RefSeq Acc Id: XP_005414138   ⟸   XM_005414081
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005414139   ⟸   XM_005414082
- Peptide Label: isoform X2
- UniProtKB: A0A8C2YIR7 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
VWFD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000001245 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000001709 ENTREZGENE
  ENSCLAT00000001709.1 UniProtKB/TrEMBL
Gene3D-CATH Laminin UniProtKB/TrEMBL
InterPro Fol_N UniProtKB/TrEMBL
  Ser_inhib-like_sf UniProtKB/TrEMBL
  TIL_dom UniProtKB/TrEMBL
  TILa_dom UniProtKB/TrEMBL
  Unchr_dom_Cys-rich UniProtKB/TrEMBL
  VWF_dom UniProtKB/TrEMBL
  VWF_type-D UniProtKB/TrEMBL
NCBI Gene Fcgbp ENTREZGENE
PANTHER ALPHA-TECTORIN-RELATED UniProtKB/TrEMBL
  VWFD DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam PF08742 UniProtKB/TrEMBL
  TIL UniProtKB/TrEMBL
  TILa UniProtKB/TrEMBL
  VWD UniProtKB/TrEMBL
PROSITE VWFD UniProtKB/TrEMBL
SMART FOLN UniProtKB/TrEMBL
  SM00832 UniProtKB/TrEMBL
  VWC UniProtKB/TrEMBL
  VWC_out UniProtKB/TrEMBL
  VWD UniProtKB/TrEMBL
Superfamily-SCOP SSF57567 UniProtKB/TrEMBL
UniProt A0A8C2YIR7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-11-09 Fcgbp  Fc gamma binding protein  Fcgbp  Fc fragment of IgG binding protein  Symbol and/or name change 5135510 APPROVED