Trim2 (tripartite motif containing 2) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Trim2 (tripartite motif containing 2) Chinchilla lanigera
Analyze
Symbol: Trim2
Name: tripartite motif containing 2
RGD ID: 8982157
Description: ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); regulation of neuron apoptotic process (ortholog); ASSOCIATED WITH axonal neuropathy (ortholog); Charcot-Marie-Tooth disease type 2R (ortholog); osteoarthritis (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: tripartite motif-containing protein 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554717,594,966 - 7,698,436 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554717,523,895 - 7,698,436 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)

Molecular Function

References


Genomics

Comparative Map Data
Trim2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554717,594,966 - 7,698,436 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554717,523,895 - 7,698,436 (+)NCBIChiLan1.0ChiLan1.0
TRIM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl4153,152,342 - 153,339,317 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl4153,152,163 - 153,339,319 (+)EnsemblGRCh38hg38GRCh38
GRCh384153,152,163 - 153,339,317 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh374154,073,315 - 154,260,469 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364154,345,068 - 154,479,918 (+)NCBINCBI36hg18NCBI36
Build 344154,483,222 - 154,618,073NCBI
Celera4151,399,157 - 151,585,007 (+)NCBI
Cytogenetic Map4q31.3NCBI
HuRef4149,803,365 - 149,990,685 (+)NCBIHuRef
CHM1_14154,052,715 - 154,238,856 (+)NCBICHM1_1
Trim2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39384,067,746 - 84,215,659 (-)NCBIGRCm39mm39
GRCm39 Ensembl384,067,746 - 84,214,184 (-)Ensembl
GRCm38384,160,439 - 84,308,352 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl384,160,439 - 84,306,877 (-)EnsemblGRCm38mm10GRCm38
MGSCv37383,965,796 - 84,024,799 (-)NCBIGRCm37mm9NCBIm37
MGSCv36384,246,372 - 84,306,788 (-)NCBImm8
Celera384,177,689 - 84,237,141 (-)NCBICelera
Cytogenetic Map3F1NCBI
Trim2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22169,500,628 - 169,652,855 (-)NCBI
Rnor_6.0 Ensembl2183,145,089 - 183,213,228 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02183,145,096 - 183,223,819 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02202,557,491 - 202,635,138 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42175,908,880 - 175,974,709 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12175,863,388 - 175,937,931 (-)NCBI
Celera2163,500,875 - 163,564,336 (-)NCBICelera
Cytogenetic Map2q34NCBI
TRIM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14157,142,848 - 157,505,076 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4157,194,729 - 157,500,723 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v04145,494,088 - 145,681,287 (+)NCBIMhudiblu_PPA_v0panPan3
TRIM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11550,973,758 - 51,104,422 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Trim2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493657688,163 - 202,944 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl875,770,345 - 75,890,235 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1875,770,344 - 75,939,812 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2880,265,933 - 80,456,479 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRIM2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1799,702,874 - 99,888,024 (+)NCBI
ChlSab1.1 Ensembl799,807,646 - 99,888,340 (+)Ensembl
Trim2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248584,509,893 - 4,683,241 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005400911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005400912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005400913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005400914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005400915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005400916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005400917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005400918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005400920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005400921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013522895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013522896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01053154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01053155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01053156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01053157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01053158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01053159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01053160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBCQ01127466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCLAT00000009565   ⟹   ENSCLAP00000009436
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554717,594,966 - 7,698,436 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000009566   ⟹   ENSCLAP00000009437
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554717,636,524 - 7,698,436 (+)Ensembl
RefSeq Acc Id: XM_005400911   ⟹   XP_005400968
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554717,594,966 - 7,698,436 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005400912   ⟹   XP_005400969
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554717,594,966 - 7,698,436 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005400913   ⟹   XP_005400970
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554717,636,850 - 7,698,436 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005400914   ⟹   XP_005400971
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554717,541,241 - 7,698,436 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005400915   ⟹   XP_005400972
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554717,636,850 - 7,698,436 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005400916   ⟹   XP_005400973
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554717,541,241 - 7,698,436 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005400917   ⟹   XP_005400974
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554717,637,217 - 7,698,436 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005400918   ⟹   XP_005400975
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554717,637,217 - 7,698,436 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005400920   ⟹   XP_005400977
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554717,523,895 - 7,698,436 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005400921   ⟹   XP_005400978
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554717,541,676 - 7,698,436 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013522895   ⟹   XP_013378349
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554717,594,970 - 7,698,436 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013522896   ⟹   XP_013378350
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554717,594,970 - 7,698,436 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005400977   ⟸   XM_005400920
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005400971   ⟸   XM_005400914
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005400973   ⟸   XM_005400916
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005400978   ⟸   XM_005400921
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005400968   ⟸   XM_005400911
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005400969   ⟸   XM_005400912
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005400970   ⟸   XM_005400913
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005400972   ⟸   XM_005400915
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005400974   ⟸   XM_005400917
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005400975   ⟸   XM_005400918
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013378349   ⟸   XM_013522895
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013378350   ⟸   XM_013522896
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSCLAP00000009436   ⟸   ENSCLAT00000009565
RefSeq Acc Id: ENSCLAP00000009437   ⟸   ENSCLAT00000009566


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006548 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000009436 ENTREZGENE
  ENSCLAP00000009437 ENTREZGENE
Ensembl Transcript ENSCLAT00000009565 ENTREZGENE
  ENSCLAT00000009566 ENTREZGENE
NCBI Gene Trim2 ENTREZGENE