St8sia6 (ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6) - Rat Genome Database

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Gene: St8sia6 (ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6) Chinchilla lanigera
Analyze
Symbol: St8sia6
Name: ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6
RGD ID: 8981849
Description: ENCODES a protein that exhibits sialyltransferase activity (ortholog); INVOLVED IN blastocyst hatching (ortholog); carbohydrate biosynthetic process (ortholog); ganglioside biosynthetic process (ortholog); ASSOCIATED WITH COVID-19 (ortholog); genetic disease (ortholog); hypoparathyroidism-deafness-renal disease syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: alpha-2,8-sialyltransferase 8F
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542910,538,661 - 10,658,008 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542910,538,660 - 10,660,493 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
St8sia6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542910,538,661 - 10,658,008 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542910,538,660 - 10,660,493 (+)NCBIChiLan1.0ChiLan1.0
ST8SIA6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381017,315,421 - 17,454,595 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1017,315,421 - 17,454,595 (-)EnsemblGRCh38hg38GRCh38
GRCh371017,357,420 - 17,496,594 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361017,402,682 - 17,536,260 (-)NCBINCBI36Build 36hg18NCBI36
Celera1017,295,946 - 17,429,480 (-)NCBICelera
Cytogenetic Map10p12.33NCBI
HuRef1017,275,955 - 17,409,503 (-)NCBIHuRef
CHM1_11017,363,085 - 17,496,601 (-)NCBICHM1_1
T2T-CHM13v2.01017,333,849 - 17,473,031 (-)NCBIT2T-CHM13v2.0
St8sia6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39213,659,745 - 13,798,659 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl213,655,832 - 13,798,875 (-)EnsemblGRCm39 Ensembl
GRCm38213,651,018 - 13,794,734 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl213,651,021 - 13,794,064 (-)EnsemblGRCm38mm10GRCm38
MGSCv37213,576,561 - 13,715,147 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36213,572,787 - 13,711,274 (-)NCBIMGSCv36mm8
Celera213,563,519 - 13,699,249 (-)NCBICelera
Cytogenetic Map2A1NCBI
cM Map210.09NCBI
St8sia6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81781,649,866 - 81,847,970 (-)NCBIGRCr8
mRatBN7.21776,740,755 - 76,884,178 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1776,745,224 - 76,884,299 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1780,220,377 - 80,344,118 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01784,055,770 - 84,179,521 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01778,103,669 - 78,227,420 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01780,960,785 - 81,002,830 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1780,960,785 - 81,002,838 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01782,587,821 - 82,756,275 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41787,927,956 - 88,070,368 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11787,938,788 - 88,081,201 (-)NCBI
Celera1776,117,552 - 76,241,106 (-)NCBICelera
Cytogenetic Map17q12.3NCBI
ST8SIA6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2830,157,749 - 30,296,661 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11030,163,078 - 30,301,982 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01017,632,154 - 17,771,252 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11017,908,992 - 18,042,179 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1017,909,556 - 18,041,946 (-)Ensemblpanpan1.1panPan2
ST8SIA6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1219,392,690 - 19,618,127 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl219,482,468 - 19,616,339 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha216,585,594 - 16,719,315 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0219,773,544 - 19,907,512 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl219,773,544 - 19,909,106 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1216,976,396 - 17,110,191 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0217,811,908 - 17,947,997 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0218,431,883 - 18,566,169 (+)NCBIUU_Cfam_GSD_1.0
St8sia6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934417,966,001 - 18,090,919 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365209,869,195 - 9,988,541 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365209,869,166 - 9,990,205 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ST8SIA6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1043,602,908 - 43,755,277 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11043,601,677 - 43,755,154 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21048,311,195 - 48,393,885 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ST8SIA6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1917,269,548 - 17,400,860 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605122,908,115 - 23,043,088 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
St8sia6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479610,458,466 - 10,570,959 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479610,383,947 - 10,577,117 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000009623   ⟹   ENSCLAP00000009494
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542910,538,661 - 10,658,008 (+)Ensembl
RefSeq Acc Id: XM_013515560   ⟹   XP_013371014
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542910,538,660 - 10,660,493 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013371014 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000009494
  ENSCLAP00000009494.1
Reference Protein Sequences
RefSeq Acc Id: XP_013371014   ⟸   XM_013515560
- UniProtKB: A0A8C2V3L8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000009494   ⟸   ENSCLAT00000009623


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006591 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000009623 ENTREZGENE
  ENSCLAT00000009623.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.1480.20 UniProtKB/TrEMBL
InterPro Glyco_trans_29 UniProtKB/TrEMBL
  GT29-like_sf UniProtKB/TrEMBL
  Sialyl_trans UniProtKB/TrEMBL
NCBI Gene St8sia6 ENTREZGENE
PANTHER ALPHA-2,8-SIALYLTRANSFERASE UniProtKB/TrEMBL
  ALPHA-2,8-SIALYLTRANSFERASE 8F UniProtKB/TrEMBL
Pfam Glyco_transf_29 UniProtKB/TrEMBL
PIRSF Sialyl_trans UniProtKB/TrEMBL
UniProt A0A8C2V3L8 ENTREZGENE, UniProtKB/TrEMBL