Tchp (trichoplein keratin filament binding) - Rat Genome Database

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Gene: Tchp (trichoplein keratin filament binding) Chinchilla lanigera
Analyze
Symbol: Tchp
Name: trichoplein keratin filament binding
RGD ID: 8981040
Description: INVOLVED IN apoptotic process (ortholog); negative regulation of cell growth (ortholog); negative regulation of cilium assembly (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN apical cortex (ortholog); centrosome (ortholog); ciliary transition fiber (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: trichoplein, keratin filament binding
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554558,681,058 - 8,696,996 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Tchp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554558,681,058 - 8,696,996 (-)NCBIChiLan1.0ChiLan1.0
TCHP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812109,880,667 - 109,918,069 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12109,900,264 - 109,983,841 (+)EnsemblGRCh38hg38GRCh38
GRCh3712110,338,079 - 110,355,874 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612108,822,706 - 108,840,251 (+)NCBINCBI36Build 36hg18NCBI36
Celera12109,962,427 - 109,980,222 (+)NCBICelera
Cytogenetic Map12q24.11NCBI
HuRef12107,354,164 - 107,371,959 (+)NCBIHuRef
CHM1_112110,305,866 - 110,323,661 (+)NCBICHM1_1
T2T-CHM13v2.012109,856,359 - 109,893,762 (+)NCBIT2T-CHM13v2.0
Tchp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395114,845,813 - 114,860,388 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5114,845,821 - 114,860,388 (+)EnsemblGRCm39 Ensembl
GRCm385114,707,779 - 114,722,327 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5114,707,760 - 114,722,327 (+)EnsemblGRCm38mm10GRCm38
MGSCv375115,157,788 - 115,172,336 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365114,968,873 - 114,983,326 (+)NCBIMGSCv36mm8
Celera5111,805,995 - 111,820,543 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map555.99NCBI
Tchp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81247,538,520 - 47,553,895 (-)NCBIGRCr8
mRatBN7.21241,877,888 - 41,893,264 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1241,877,889 - 41,892,427 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1243,045,433 - 43,059,937 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01243,659,011 - 43,673,515 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01242,719,503 - 42,734,009 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01247,638,278 - 47,653,602 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1247,638,274 - 47,653,638 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01249,431,571 - 49,446,355 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41243,165,998 - 43,180,692 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11243,030,449 - 43,050,917 (-)NCBI
Celera1243,493,579 - 43,506,170 (-)NCBICelera
Cytogenetic Map12q16NCBI
TCHP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210117,966,563 - 117,984,986 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112117,963,304 - 117,981,388 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012107,476,176 - 107,494,035 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112110,871,115 - 110,889,104 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12110,873,883 - 110,889,104 (+)Ensemblpanpan1.1panPan2
TCHP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12617,223,574 - 17,242,788 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2617,229,123 - 17,241,270 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2618,558,972 - 18,578,387 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02617,568,254 - 17,587,693 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2617,572,494 - 17,587,679 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12618,768,981 - 18,788,164 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02617,558,082 - 17,577,293 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02617,575,340 - 17,594,540 (-)NCBIUU_Cfam_GSD_1.0
Tchp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118143,956,006 - 143,970,759 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367691,505,150 - 1,519,883 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TCHP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1441,061,763 - 41,075,951 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11441,062,137 - 41,077,644 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21443,577,716 - 43,593,237 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TCHP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111105,140,397 - 105,158,512 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11105,140,423 - 105,158,978 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037139,961,900 - 139,980,059 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tchp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474710,587,587 - 10,603,396 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005396443   ⟹   XP_005396500
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554558,681,058 - 8,696,996 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013520481   ⟹   XP_013375935
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554558,681,058 - 8,696,996 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005396500 (Get FASTA)   NCBI Sequence Viewer  
  XP_013375935 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000015626
  ENSCLAP00000015626.1
Reference Protein Sequences
RefSeq Acc Id: XP_005396500   ⟸   XM_005396443
- UniProtKB: A0A8C2YQD8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013375935   ⟸   XM_013520481
- UniProtKB: A0A8C2YQD8 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Trichohyalin-plectin-homology


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010742 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000015788 ENTREZGENE
  ENSCLAT00000015788.1 UniProtKB/TrEMBL
InterPro CFAP53/TCHP UniProtKB/TrEMBL
  TPH_dom UniProtKB/TrEMBL
NCBI Gene Tchp ENTREZGENE
PANTHER PTHR31183 UniProtKB/TrEMBL
  PTHR31183:SF2 UniProtKB/TrEMBL
Pfam TPH UniProtKB/TrEMBL
UniProt A0A8C2YQD8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Tchp  trichoplein keratin filament binding    trichoplein, keratin filament binding  Symbol and/or name change 5135510 APPROVED