Mdga2 (MAM domain containing glycosylphosphatidylinositol anchor 2) - Rat Genome Database

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Gene: Mdga2 (MAM domain containing glycosylphosphatidylinositol anchor 2) Chinchilla lanigera
Analyze
Symbol: Mdga2
Name: MAM domain containing glycosylphosphatidylinositol anchor 2
RGD ID: 8980623
Description: INVOLVED IN gene expression (ortholog); motor behavior (ortholog); negative regulation of neuron apoptotic process (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: MAM domain-containing glycosylphosphatidylinositol anchor protein 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540914,684,611 - 15,449,388 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540914,684,252 - 15,449,388 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Mdga2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540914,684,611 - 15,449,388 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540914,684,252 - 15,449,388 (+)NCBIChiLan1.0ChiLan1.0
MDGA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381446,839,623 - 47,675,605 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1446,840,092 - 47,675,605 (-)EnsemblGRCh38hg38GRCh38
GRCh371447,308,826 - 48,144,808 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361446,379,045 - 46,882,145 (-)NCBINCBI36Build 36hg18NCBI36
Build 341446,379,045 - 46,882,145NCBI
Celera1427,169,381 - 28,004,719 (-)NCBICelera
Cytogenetic Map14q21.3NCBI
HuRef1427,426,615 - 28,261,881 (-)NCBIHuRef
CHM1_11447,247,613 - 48,082,719 (-)NCBICHM1_1
T2T-CHM13v2.01441,038,514 - 41,874,449 (-)NCBIT2T-CHM13v2.0
Mdga2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391266,512,832 - 67,269,323 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1266,512,834 - 67,269,323 (-)EnsemblGRCm39 Ensembl
GRCm381266,459,419 - 67,222,549 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1266,466,060 - 67,222,549 (-)EnsemblGRCm38mm10GRCm38
MGSCv371267,572,169 - 68,322,190 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361267,389,787 - 68,139,808 (-)NCBIMGSCv36mm8
Celera1267,602,561 - 68,352,775 (-)NCBICelera
Cytogenetic Map12C2NCBI
cM Map1227.63NCBI
Mdga2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8690,482,687 - 91,346,784 (-)NCBIGRCr8
mRatBN7.2684,746,422 - 85,608,640 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl684,761,941 - 85,608,126 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx685,123,229 - 85,979,390 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0685,422,600 - 86,278,801 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0684,864,059 - 85,717,130 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0688,442,620 - 89,292,454 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl688,447,749 - 88,917,070 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0697,916,163 - 98,773,394 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4688,155,407 - 89,020,699 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1688,158,867 - 89,024,155 (-)NCBI
Celera683,298,219 - 84,140,941 (-)NCBICelera
Cytogenetic Map6q24NCBI
MDGA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21547,971,234 - 48,818,509 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11447,187,743 - 48,036,253 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01427,434,904 - 28,274,969 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11445,752,214 - 46,584,148 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1445,752,214 - 46,583,991 (-)Ensemblpanpan1.1panPan2
MDGA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1823,827,284 - 24,608,003 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl823,832,475 - 24,607,866 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha823,644,302 - 23,948,023 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0823,992,881 - 24,785,403 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl823,999,793 - 24,785,345 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1823,651,714 - 24,434,692 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0823,720,107 - 24,501,367 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0824,049,174 - 24,831,369 (-)NCBIUU_Cfam_GSD_1.0
Mdga2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864055,878,524 - 56,640,257 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365832,048,733 - 2,804,135 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365832,048,655 - 2,804,135 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MDGA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1176,770,071 - 177,593,876 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11176,770,045 - 177,595,012 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21196,939,349 - 197,065,369 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MDGA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12423,853,710 - 24,705,276 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2423,856,533 - 24,318,531 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605312,230,959 - 13,075,887 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mdga2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473120,951,954 - 21,754,936 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473120,951,651 - 21,760,267 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005376849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013510341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013510342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01009654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01009655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01009656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01009657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01009658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01009659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01009660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01009661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01009662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01009663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01009664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01009665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01009666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01009667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01009668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01009669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01009670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01009671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01009672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01009673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01009674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01009675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01009676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01009677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBCQ01145496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCLAT00000022987   ⟹   ENSCLAP00000022778
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540914,684,611 - 15,447,089 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000022988   ⟹   ENSCLAP00000022779
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540914,684,611 - 15,447,089 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000022989   ⟹   ENSCLAP00000022780
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540914,994,967 - 15,449,388 (+)Ensembl
RefSeq Acc Id: XM_005376849   ⟹   XP_005376906
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540914,684,252 - 15,449,388 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013510341   ⟹   XP_013365795
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540915,066,121 - 15,449,388 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013510342   ⟹   XP_013365796
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540915,066,121 - 15,449,388 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005376906 (Get FASTA)   NCBI Sequence Viewer  
  XP_013365795 (Get FASTA)   NCBI Sequence Viewer  
  XP_013365796 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000022778
  ENSCLAP00000022778.1
  ENSCLAP00000022779.1
  ENSCLAP00000022780.1
Reference Protein Sequences
RefSeq Acc Id: XP_005376906   ⟸   XM_005376849
- Peptide Label: isoform X1
- UniProtKB: A0A8C2W408 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013365795   ⟸   XM_013510341
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013365796   ⟸   XM_013510342
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000022779   ⟸   ENSCLAT00000022988
RefSeq Acc Id: ENSCLAP00000022778   ⟸   ENSCLAT00000022987
RefSeq Acc Id: ENSCLAP00000022780   ⟸   ENSCLAT00000022989
Protein Domains
Fibronectin type-III   Ig-like   MAM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000015619 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000022987 ENTREZGENE
  ENSCLAT00000022987.1 UniProtKB/TrEMBL
  ENSCLAT00000022988.1 UniProtKB/TrEMBL
  ENSCLAT00000022989.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.200 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
InterPro ConA-like_dom_sf UniProtKB/TrEMBL
  FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  MAM_dom UniProtKB/TrEMBL
NCBI Gene Mdga2 ENTREZGENE
PANTHER IGLON FAMILY OF IMMUNOGLOBULIN SUPERFAMILY-RELATED UniProtKB/TrEMBL
  LIMBIC SYSTEM-ASSOCIATED MEMBRANE PROTEIN UniProtKB/TrEMBL
  MAM DOMAIN CONTAINING GLYCOSYLPHOSPHATIDYLINOSITOL ANCHOR 2 UniProtKB/TrEMBL
  NEPHRIN UniProtKB/TrEMBL
Pfam I-set UniProtKB/TrEMBL
  Ig_3 UniProtKB/TrEMBL
  MAM UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
  IG_LIKE UniProtKB/TrEMBL
  MAM_2 UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  MAM UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF49265 UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
UniProt A0A8C2VZ35_CHILA UniProtKB/TrEMBL
  A0A8C2VZ42_CHILA UniProtKB/TrEMBL
  A0A8C2W408 ENTREZGENE, UniProtKB/TrEMBL