Kctd11 (potassium channel tetramerization domain containing 11) - Rat Genome Database

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Gene: Kctd11 (potassium channel tetramerization domain containing 11) Chinchilla lanigera
Analyze
Symbol: Kctd11
Name: potassium channel tetramerization domain containing 11
RGD ID: 8979413
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN negative regulation of neuroblast proliferation (ortholog); negative regulation of smoothened signaling pathway (ortholog); nervous system development (ortholog); ASSOCIATED WITH common variable immunodeficiency (ortholog); congenital myasthenic syndrome 2A (ortholog); dyskeratosis congenita (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BTB/POZ domain-containing protein KCTD11
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554679,564,905 - 9,567,020 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Kctd11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554679,564,905 - 9,567,020 (-)NCBIChiLan1.0ChiLan1.0
KCTD11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,352,162 - 7,354,944 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,351,889 - 7,354,944 (+)EnsemblGRCh38hg38GRCh38
GRCh37177,255,481 - 7,258,263 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36177,195,932 - 7,198,987 (+)NCBINCBI36Build 36hg18NCBI36
Build 34177,196,204 - 7,198,984NCBI
Celera177,281,147 - 7,284,208 (+)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef177,149,261 - 7,152,322 (+)NCBIHuRef
CHM1_1177,263,983 - 7,267,038 (+)NCBICHM1_1
T2T-CHM13v2.0177,256,147 - 7,258,935 (+)NCBIT2T-CHM13v2.0
Kctd11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,769,090 - 69,771,811 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1169,769,087 - 69,772,232 (-)EnsemblGRCm39 Ensembl
GRCm381169,878,264 - 69,880,985 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,878,261 - 69,881,406 (-)EnsemblGRCm38mm10GRCm38
MGSCv371169,691,766 - 69,694,487 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361169,693,872 - 69,697,601 (-)NCBIMGSCv36mm8
Celera1177,425,819 - 77,428,540 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.91NCBI
Kctd11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81055,101,292 - 55,103,455 (-)NCBIGRCr8
mRatBN7.21054,602,575 - 54,604,738 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1054,599,754 - 54,604,760 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1059,265,056 - 59,267,219 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01058,753,627 - 58,755,790 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01054,261,293 - 54,263,456 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01056,489,552 - 56,491,715 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1056,489,552 - 56,491,715 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01056,234,671 - 56,236,834 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41056,722,761 - 56,724,924 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11056,737,084 - 56,737,783 (-)NCBI
Celera1053,756,583 - 53,758,746 (-)NCBICelera
Cytogenetic Map10q24NCBI
KCTD11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21914,948,601 - 14,951,984 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11716,914,490 - 16,917,653 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0177,386,148 - 7,389,198 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1177,372,262 - 7,375,310 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,373,315 - 7,374,013 (+)Ensemblpanpan1.1panPan2
KCTD11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1532,305,898 - 32,308,737 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha532,443,898 - 32,445,782 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0532,411,287 - 32,413,127 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl532,411,256 - 32,414,155 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1532,376,704 - 32,379,520 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0532,335,581 - 32,337,331 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0532,512,491 - 32,514,375 (+)NCBIUU_Cfam_GSD_1.0
Kctd11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560247,169,956 - 47,173,287 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936595645,476 - 646,174 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936595644,098 - 647,475 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCTD11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,698,834 - 52,699,649 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,698,155 - 52,700,965 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21254,916,992 - 54,919,775 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KCTD11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1166,730,139 - 6,733,225 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl166,731,246 - 6,731,944 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605914,677,811 - 14,680,834 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kctd11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247869,973,841 - 9,974,539 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247869,972,773 - 9,975,819 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005399508   ⟹   XP_005399565
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554679,564,905 - 9,567,020 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005399565 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005399565   ⟸   XM_005399508
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Kctd11 ENTREZGENE