Tbkbp1 (TBK1 binding protein 1) - Rat Genome Database

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Gene: Tbkbp1 (TBK1 binding protein 1) Chinchilla lanigera
Analyze
Symbol: Tbkbp1
Name: TBK1 binding protein 1
RGD ID: 8977750
Description: ASSOCIATED WITH ankylosing spondylitis (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: TANK-binding kinase 1-binding protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545113,344,661 - 13,358,590 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Tbkbp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545113,344,661 - 13,358,590 (-)NCBIChiLan1.0ChiLan1.0
TBKBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381747,694,063 - 47,712,063 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1747,694,161 - 47,712,052 (+)EnsemblGRCh38hg38GRCh38
GRCh371745,771,429 - 45,789,429 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361743,127,629 - 43,144,415 (+)NCBINCBI36Build 36hg18NCBI36
Celera1742,225,439 - 42,242,239 (+)NCBICelera
Cytogenetic Map17q21.32NCBI
HuRef1741,141,646 - 41,158,502 (+)NCBIHuRef
CHM1_11745,837,576 - 45,854,378 (+)NCBICHM1_1
T2T-CHM13v2.01748,555,851 - 48,573,871 (+)NCBIT2T-CHM13v2.0
Tbkbp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391197,026,997 - 97,042,332 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1197,026,997 - 97,042,321 (-)EnsemblGRCm39 Ensembl
GRCm381197,136,171 - 97,151,506 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1197,136,171 - 97,151,495 (-)EnsemblGRCm38mm10GRCm38
MGSCv371196,997,485 - 97,011,026 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361196,952,263 - 96,965,802 (-)NCBIMGSCv36mm8
Celera11106,789,115 - 106,802,657 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1160.95NCBI
Tbkbp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81082,616,978 - 82,632,169 (-)NCBIGRCr8
mRatBN7.21082,120,558 - 82,135,749 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1082,120,564 - 82,134,352 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1087,069,001 - 87,082,798 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01086,567,058 - 86,580,861 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01081,959,664 - 81,973,464 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01085,071,058 - 85,085,596 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1085,071,064 - 85,084,850 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01084,861,022 - 84,875,560 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41085,855,910 - 85,869,707 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11085,870,279 - 85,884,077 (-)NCBI
Celera1080,880,599 - 80,894,381 (-)NCBICelera
Cytogenetic Map10q31NCBI
TBKBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21917,390,895 - 17,408,887 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11719,356,497 - 19,374,404 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0179,825,050 - 9,843,029 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11710,006,903 - 10,023,857 (-)NCBIpanpan1.1PanPan1.1panPan2
TBKBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1924,040,484 - 24,055,038 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl924,039,766 - 24,042,034 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha923,504,934 - 23,522,252 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0924,830,804 - 24,848,156 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl924,830,551 - 24,848,167 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1923,601,282 - 23,618,586 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0923,862,587 - 23,879,894 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0923,989,365 - 24,006,692 (+)NCBIUU_Cfam_GSD_1.0
Tbkbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560223,479,228 - 23,495,615 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649013,580,915 - 13,594,582 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649013,579,523 - 13,596,325 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TBKBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1223,954,605 - 23,971,494 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11223,952,966 - 23,971,495 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21223,822,803 - 23,841,517 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TBKBP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11668,092,243 - 68,110,074 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1668,094,265 - 68,110,149 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607739,137,677 - 39,155,469 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tbkbp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247954,409,846 - 4,423,746 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005394605   ⟹   XP_005394662
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545113,344,661 - 13,358,590 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005394662 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005394662   ⟸   XM_005394605
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Tbkbp1 ENTREZGENE