Fbxo42 (F-box protein 42) - Rat Genome Database

Name: Fbxo42
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Fbxo42 (F-box protein 42) Chinchilla lanigera

Analyze

Symbol:

Fbxo42

Name:

F-box protein 42

RGD ID:

8977355

Description:

ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); genetic disease (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

F-box only protein 42

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FBXO42 (F-box protein 42)	NCBI	Ortholog
Mus musculus (house mouse):	Fbxo42 (F-box protein 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Fbxo42 (F-box protein 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FBXO42 (F-box protein 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FBXO42 (F-box protein 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Fbxo42 (F-box protein 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FBXO42 (F-box protein 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FBXO42 (F-box protein 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Fbxo42 (F-box protein 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955527	1,967,232 - 2,049,524 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955527	1,967,232 - 2,049,524 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

chromosome 1p36 deletion syndrome (ISO)

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Fbxo42
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955527	1,967,232 - 2,049,524 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955527	1,967,232 - 2,049,524 (+)	NCBI	ChiLan1.0	ChiLan1.0

FBXO42
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	16,246,840 - 16,352,480 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	16,246,840 - 16,352,480 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	16,573,335 - 16,678,975 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	16,449,146 - 16,551,535 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	16,321,865 - 16,424,254	NCBI
Celera	1	15,056,452 - 15,158,874 (-)	NCBI		Celera
Cytogenetic Map	1	p36.13	NCBI
HuRef	1	15,093,755 - 15,196,329 (-)	NCBI		HuRef
CHM1_1	1	16,375,153 - 16,477,623 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	15,688,176 - 15,793,999 (-)	NCBI		T2T-CHM13v2.0

Fbxo42
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	140,875,216 - 140,931,373 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	140,875,224 - 140,931,373 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	141,147,922 - 141,204,062 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	141,147,913 - 141,204,062 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	140,703,837 - 140,759,977 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	140,420,007 - 140,476,138 (+)	NCBI		MGSCv36	mm8
Celera	4	142,955,099 - 143,012,796 (+)	NCBI		Celera
Cytogenetic Map	4	D3	NCBI
cM Map	4	73.41	NCBI

Fbxo42
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	158,734,165 - 158,792,560 (+)	NCBI		GRCr8
mRatBN7.2	5	153,451,162 - 153,509,564 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	153,451,153 - 153,506,342 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	156,139,864 - 156,198,142 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	157,913,137 - 157,971,419 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	157,902,324 - 157,960,606 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	159,670,662 - 159,729,070 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	159,670,662 - 159,729,064 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	163,382,899 - 163,444,733 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	160,005,496 - 160,061,687 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	160,015,781 - 160,072,342 (+)	NCBI
Celera	5	151,815,504 - 151,870,636 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

FBXO42
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	210,568,617 - 210,674,961 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	209,817,242 - 209,923,531 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	15,383,505 - 15,489,800 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	16,375,319 - 16,481,012 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	16,375,319 - 16,481,012 (-)	Ensembl	panpan1.1		panPan2

FBXO42
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	81,358,204 - 81,460,603 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	81,358,212 - 81,456,916 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	77,894,110 - 77,996,832 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	82,003,981 - 82,105,114 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	82,003,974 - 82,106,745 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	78,756,902 - 78,858,094 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	79,773,947 - 79,876,973 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	80,842,557 - 80,943,172 (+)	NCBI		UU_Cfam_GSD_1.0

Fbxo42
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	37,913,546 - 37,994,035 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	3,738,234 - 3,818,842 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	3,738,332 - 3,818,796 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FBXO42
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	75,364,450 - 75,446,085 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	75,365,130 - 75,446,121 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	69,680,295 - 69,761,252 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FBXO42
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	115,971,342 - 116,056,150 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	115,971,369 - 116,059,285 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666054	19,454,277 - 19,554,377 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fbxo42
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	2,368,251 - 2,466,298 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624764	2,368,251 - 2,465,867 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005409838	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005409839	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005409840	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005409841	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013507387	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01069420	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01069421	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01160524	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000003134 ⟹ ENSCLAP00000003070

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955527	1,967,232 - 2,049,524 (+)	Ensembl

RefSeq Acc Id:

XM_005409838 ⟹ XP_005409895

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955527	1,967,232 - 2,049,524 (+)	NCBI

Sequence:

show sequence

GCGCGCTCAGTGCTGTCTTCTGGCCGGAGCCGAGCAGCGGCGGCGGCGTTTGAGTGGAGGAAGA
TGGCGGCTCCGGGTGGTTCGGGGTCCTGGCAGCTGTGAGGACTCCCCAGCACTGCAGACGCGGC
CTGGGGCGAAGTGCCTCTGGTCTGGTCCTGCCCCGGGGTCCCTCACCACTCTCACCAGCGGAGC
GAACCCGAGAACGTGGAGCGGGCCGGGCCAGATCTGCAGTGGATGAGCGAACCAGAAAGATGTC
CACCTTAAAACTGAAGCCATGAAATGCTTTGGAGTGGAATGTCATGGCCAGCTCTTCAGACAGT
GAAGATGACAGTTTCATGGCTGTGGACCAAGAAGAAACTGCGCCGGAAGGGACAATGGAGCAAG
ATGAAAACGCCCACCCAGGACTGGAGGTTGAGGAGCCTCGACACAATAGGTCTATGTCAGAGCT
GCCAGAAGAAGTTTTAGAGTATATCTTGTCTTTCCTCTCACCGTATCAGGAGCACAAGACTGCG
GCCCTCGTCTGCAAACAATGGTATCGACTTATCAAAGGAGTAGCCCATCAGTGTTACCATGGTT
TCATGAAGGCTGTTCAGGAAGGAAACATTCAGTGGGAGAGCCGCACTTACCCGTACCCTGGAAC
CCCAATTACTCAGCGGTTCTCACACAGTGCGTGCTATTATGATGCTAATCAGTCTATGTATGTG
TTCGGAGGTTGTACCCAGAGCAGCTGTAATGCTGCCTTCAATGACCTCTGGAGACTTGACCTCA
ACAGCAAAGAGTGGATTCGACCCTTGGCTTCAGGCTCTTACCCTTCCCCCAAAGCTGGAGCAAC
TCTGGTTGTATACAAGGACTTGCTAGTGCTCTTTGGTGGCTGGACACGACCAAGCCCTTATCCT
CTGCACCAACCAGAGAGATTCTTTGATGAAATACACACTTACTCACCCTCTAAAAACTGGTGGA
ATTGCATTGTAACAACCCATGGGCCACCTCCCATGGCCGGCCACTCCTCCTGTGTGATAGATGA
TAAAATGATTGTCTTTGGTGGTTCTTTAGGATCCCGGCAAATGAGCAATGATGTCTGGGTCCTT
GATCTCGAGCAGTGGGCATGGTCCAAGCCGAACATCACCGGCCCCAGTCCTCATCCTCGAGGTG
GTCAATCTCAGATTGTCATAGACAGTGCGACTATCTTAATCCTTGGAGGGTGTGGCGGTCCCAA
CGCTCTTTTCAAGGATGCTTGGTTGTTGCACATGCACTCGGGTCCCTGGGCCTGGCAGCCACTC
AAGGTAGAAAATGAAGATCATGGGGCTCCAGAGCTGTGGTGCCATCCAGCCTGCCGGGTGGGAC
AGTGTGTGGTGGTCTTCAGCCAGGCTCCCAGCGGGAGAGCGCCCCTCAGCCCCAGTTTGAACTC
TCGCCCATCACCTATCAGTGCCACTCCTCCAGCCCTGGTCCCTGAAACCCGAGAGTACCGCTCG
CAGTCTCCGGTGAGGAGTATGGATGAAGCTCCTTGTGTGAACGGCCGCTGGGGAACACTGAGGC
CCAGGGCTCAAAGGCAGACTCCCTCAGGTTCCCGGGAAGGGAGCCTATCCCCGGCCAGAGGAGA
TGGCTCTCCTGTTCTCAATGGTGGGAGTTTATCTCCAGGAACAGCAGCTGTCGGTGGCTCTTCC
CTGGACAGTCCTGTGCAGGCCCTATCTCCAAGCACTCCTTCTGCCGCTGAAGGGTATGACCTGA
AAGGGGGACTTGCTTTAGCCCCTCGACGAGGGTCGCTGCCAGATCAGAAAGATCTGAGACTAGG
CTCCATTGATGTGAGTTGGGACCTGAAACCTGCTTCTGGTAGCAATCACGTGGATGGCGTGGAC
AACAGGACAGCTGGGGGGAGTGCGAGACACCCTCCAGAACAGACCAATGGCGTGCATACCCCTC
CACACGTGGCCAGTGCCCTTGTGGGGGCTGTCTCACCCAGTGCCCTGCGCCGGAGTCTGGAGGC
CATCAAAGCAATATCTTCCAAGGGCCCCTCGGCCTCTGCAGCACTGAGTCCTCCTCTTGGGTCT
TCTCCAGGCTCCCCTGGGAGCCAGAGCCTGAGCAGTGGAGAAACAGTACCCATCCCCCGCCCAG
GCCCCACAGGACCTGGCCAAGGAGATGGACATTCCTTACCTCCCATTGCCCGCCGCCTGGGCCA
CCACCCGCCACAGTCCCTCAATGTCGGCAAGCCCTTGTACCAGAGTATGAACTGCAAGCCCATG
CAGATGTACGTGCTGGACATTAAAGACACCAAGGAGAAGGGGCGGGTCAAGTGGAAAGTATTCA
GCAGCGCCTCTGTGGTGGGGCCTCCTGAAACCAGCCTGCACACAGTGGTCCAAGGCAGAGGTGA
GCTCATTATATTCGGAGGACTCATGGACAAGAAGCAGAATGTGAAGTACTATCCAAAAACAAAC
GCCTTGTACTTCGTGCGTGCAAAGAGATAATGTGTCCGGACCCCCTTTCCCTTTCTGTAGCTTT
TAATTTGGAATTTCCCAGTGTGCAAGCTTTTGGACTAAGAATTGGGAAAACAGTTAACATTATT
CCCATAAACCAAAACTCCAGTGCCCAGTCTAACTCACTCCAGGCTGGGATCAAATCTTCATTAA
GAAAAAAATTATATATAAAACATATATTATATAACCAACTCTGTTTACAAAAGGGAGAGATCTC
CGTCCTAGTTCAGATAAAACTGTTGCTGTGTTTTAGCAGAGGCTGTGCTGCCTTTTTCTACTTT
GCTGATAACTAGACTAAGAGTCACTATGTTTCCAGTAGAAACCGAAGAGCCCCTGTACATCTCT
CTTTATGTGGCCTTCTCAGAATCAGAGAATGGGAAGGGCACGAATAAGACGCAAAGGAGCTTTC
GGCGCAGCCCCCACTTCTGCAGGTGCTGGCGGGGAAGAGACTCAGAAGGAAACTGCAGAGGGCC
TGTGCCCGCCCTGTCCCCTTCTGCCCTCTGTGACCCAGGGAAGTCACCCAGCAAGGGATTTCTT
TTTCCAGGTGTGCCAGGATCATCGAGGGGTGCCCACGCAGCCGACATCTGTCCGCCTCCTGCCC
GTTAGTCGTTTGAGTGCTCCCTACATGTCTCAGAAAACATTTGCTATTTGATTATGGAATTTCC
TGACAATCATGTTCGGTTGCAAGTTCCCAAAACCTATATTTGTTCTCCTTTTCCTTATTTTAGA
ATTTTTGTCCCCAGTGGCTACATTTTCCATGTAAAGGCTGCTCTCCACCACACACACACCTTTT
TTCTTGTGGATTTCCTAAGCCCTAAAGCTTTCTTACTTTGTTTTTTTCACAGAGCTCAGATTCC
TAGAGAAATCATGCTTCTTAGACGTAGTTCCAGAACACTTTCCCTGGTATCACTGGGGGGCAAG
TAGGGAATTCTAAGATGCTAGTATTGTGAAAGATCTTTGAAGCATTGAAAGGCACTTTTTCCCT
GTGGACTTCTTTTTAGTTCCAGAGCACACTGGGCATGCTCATCCATATTTGTAGAACATGGAAA
TTGGTCCTGGAAAGAATCCTAATAACAGTTCCTTCTAAGAGCCGGGAGGAGTTTGTTCCCTTCA
ACATGTGTTCTTGTGCCTGGCTGTTGGCCGGTGACTGGATTGCATATCATGTACTTGACCTTCG
TGACACTGGCTGCCCTGAGGAGCAGCTTCATCACTTTATTTACGCTTGCCTTGAAGTTCATGTG
TCACCCAAACAAAGGTACAACCAAGTAAGAACATTTCTTTGATTAATACAGAAAGTTAGAAGTT
GCCTAGTCTTCAAAGCGTGGCCGCGACATGGGAAATGTCAAACGAGTTTATTTCAAATGGGACC
ATTTAAATACAGGGTTTTGGTGATTTCTCA

hide sequence

RefSeq Acc Id:

XM_005409839 ⟹ XP_005409896

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955527	1,967,232 - 2,049,524 (+)	NCBI

Sequence:

show sequence

GCGCGCTCAGTGCTGTCTTCTGGCCGGAGCCGAGCAGCGGCGGCGGCGTTTGAGTGGAGGAAGA
TGGCGGCTCCGGGTGGTTCGGGGTCCTGGCAGCTGTGAGGACTCCCCAGCACTGCAGACGCGGC
CTGGGGCGAAGTGCCTCTGGTCTGGTCCTGCCCCGGGGTCCCTCACCACTCTCACCAGCGGAGC
GAACCCGAGAACGTGGAGCGGGCCGGGCCAGATCTGCAGTGGATGAGCGAACCAGAAAGATGTC
CACCTTAAAACTGAAGCCATGAAATGAAGCCTGCTTGGTGGTGTGCACACCTTGTTATCCCAGC
ACTCTGGAAGGTTGAGACAGGAGGATCCTAAGTTCAAGGCCTACTTGGGCAATTTGCTTTGGAG
TGGAATGTCATGGCCAGCTCTTCAGACAGTGAAGATGACAGTTTCATGGCTGTGGACCAAGAAG
AAACTGCGCCGGAAGGGACAATGGAGCAAGATGAAAACGCCCACCCAGGACTGGAGGTTGAGGA
GCCTCGACACAATAGGTCTATGTCAGAGCTGCCAGAAGAAGTTTTAGAGTATATCTTGTCTTTC
CTCTCACCGTATCAGGAGCACAAGACTGCGGCCCTCGTCTGCAAACAATGGTATCGACTTATCA
AAGGAGTAGCCCATCAGTGTTACCATGGTTTCATGAAGGCTGTTCAGGAAGGAAACATTCAGTG
GGAGAGCCGCACTTACCCGTACCCTGGAACCCCAATTACTCAGCGGTTCTCACACAGTGCGTGC
TATTATGATGCTAATCAGTCTATGTATGTGTTCGGAGGTTGTACCCAGAGCAGCTGTAATGCTG
CCTTCAATGACCTCTGGAGACTTGACCTCAACAGCAAAGAGTGGATTCGACCCTTGGCTTCAGG
CTCTTACCCTTCCCCCAAAGCTGGAGCAACTCTGGTTGTATACAAGGACTTGCTAGTGCTCTTT
GGTGGCTGGACACGACCAAGCCCTTATCCTCTGCACCAACCAGAGAGATTCTTTGATGAAATAC
ACACTTACTCACCCTCTAAAAACTGGTGGAATTGCATTGTAACAACCCATGGGCCACCTCCCAT
GGCCGGCCACTCCTCCTGTGTGATAGATGATAAAATGATTGTCTTTGGTGGTTCTTTAGGATCC
CGGCAAATGAGCAATGATGTCTGGGTCCTTGATCTCGAGCAGTGGGCATGGTCCAAGCCGAACA
TCACCGGCCCCAGTCCTCATCCTCGAGGTGGTCAATCTCAGATTGTCATAGACAGTGCGACTAT
CTTAATCCTTGGAGGGTGTGGCGGTCCCAACGCTCTTTTCAAGGATGCTTGGTTGTTGCACATG
CACTCGGGTCCCTGGGCCTGGCAGCCACTCAAGGTAGAAAATGAAGATCATGGGGCTCCAGAGC
TGTGGTGCCATCCAGCCTGCCGGGTGGGACAGTGTGTGGTGGTCTTCAGCCAGGCTCCCAGCGG
GAGAGCGCCCCTCAGCCCCAGTTTGAACTCTCGCCCATCACCTATCAGTGCCACTCCTCCAGCC
CTGGTCCCTGAAACCCGAGAGTACCGCTCGCAGTCTCCGGTGAGGAGTATGGATGAAGCTCCTT
GTGTGAACGGCCGCTGGGGAACACTGAGGCCCAGGGCTCAAAGGCAGACTCCCTCAGGTTCCCG
GGAAGGGAGCCTATCCCCGGCCAGAGGAGATGGCTCTCCTGTTCTCAATGGTGGGAGTTTATCT
CCAGGAACAGCAGCTGTCGGTGGCTCTTCCCTGGACAGTCCTGTGCAGGCCCTATCTCCAAGCA
CTCCTTCTGCCGCTGAAGGGTATGACCTGAAAGGGGGACTTGCTTTAGCCCCTCGACGAGGGTC
GCTGCCAGATCAGAAAGATCTGAGACTAGGCTCCATTGATGTGAGTTGGGACCTGAAACCTGCT
TCTGGTAGCAATCACGTGGATGGCGTGGACAACAGGACAGCTGGGGGGAGTGCGAGACACCCTC
CAGAACAGACCAATGGCGTGCATACCCCTCCACACGTGGCCAGTGCCCTTGTGGGGGCTGTCTC
ACCCAGTGCCCTGCGCCGGAGTCTGGAGGCCATCAAAGCAATATCTTCCAAGGGCCCCTCGGCC
TCTGCAGCACTGAGTCCTCCTCTTGGGTCTTCTCCAGGCTCCCCTGGGAGCCAGAGCCTGAGCA
GTGGAGAAACAGTACCCATCCCCCGCCCAGGCCCCACAGGACCTGGCCAAGGAGATGGACATTC
CTTACCTCCCATTGCCCGCCGCCTGGGCCACCACCCGCCACAGTCCCTCAATGTCGGCAAGCCC
TTGTACCAGAGTATGAACTGCAAGCCCATGCAGATGTACGTGCTGGACATTAAAGACACCAAGG
AGAAGGGGCGGGTCAAGTGGAAAGTATTCAGCAGCGCCTCTGTGGTGGGGCCTCCTGAAACCAG
CCTGCACACAGTGGTCCAAGGCAGAGGTGAGCTCATTATATTCGGAGGACTCATGGACAAGAAG
CAGAATGTGAAGTACTATCCAAAAACAAACGCCTTGTACTTCGTGCGTGCAAAGAGATAATGTG
TCCGGACCCCCTTTCCCTTTCTGTAGCTTTTAATTTGGAATTTCCCAGTGTGCAAGCTTTTGGA
CTAAGAATTGGGAAAACAGTTAACATTATTCCCATAAACCAAAACTCCAGTGCCCAGTCTAACT
CACTCCAGGCTGGGATCAAATCTTCATTAAGAAAAAAATTATATATAAAACATATATTATATAA
CCAACTCTGTTTACAAAAGGGAGAGATCTCCGTCCTAGTTCAGATAAAACTGTTGCTGTGTTTT
AGCAGAGGCTGTGCTGCCTTTTTCTACTTTGCTGATAACTAGACTAAGAGTCACTATGTTTCCA
GTAGAAACCGAAGAGCCCCTGTACATCTCTCTTTATGTGGCCTTCTCAGAATCAGAGAATGGGA
AGGGCACGAATAAGACGCAAAGGAGCTTTCGGCGCAGCCCCCACTTCTGCAGGTGCTGGCGGGG
AAGAGACTCAGAAGGAAACTGCAGAGGGCCTGTGCCCGCCCTGTCCCCTTCTGCCCTCTGTGAC
CCAGGGAAGTCACCCAGCAAGGGATTTCTTTTTCCAGGTGTGCCAGGATCATCGAGGGGTGCCC
ACGCAGCCGACATCTGTCCGCCTCCTGCCCGTTAGTCGTTTGAGTGCTCCCTACATGTCTCAGA
AAACATTTGCTATTTGATTATGGAATTTCCTGACAATCATGTTCGGTTGCAAGTTCCCAAAACC
TATATTTGTTCTCCTTTTCCTTATTTTAGAATTTTTGTCCCCAGTGGCTACATTTTCCATGTAA
AGGCTGCTCTCCACCACACACACACCTTTTTTCTTGTGGATTTCCTAAGCCCTAAAGCTTTCTT
ACTTTGTTTTTTTCACAGAGCTCAGATTCCTAGAGAAATCATGCTTCTTAGACGTAGTTCCAGA
ACACTTTCCCTGGTATCACTGGGGGGCAAGTAGGGAATTCTAAGATGCTAGTATTGTGAAAGAT
CTTTGAAGCATTGAAAGGCACTTTTTCCCTGTGGACTTCTTTTTAGTTCCAGAGCACACTGGGC
ATGCTCATCCATATTTGTAGAACATGGAAATTGGTCCTGGAAAGAATCCTAATAACAGTTCCTT
CTAAGAGCCGGGAGGAGTTTGTTCCCTTCAACATGTGTTCTTGTGCCTGGCTGTTGGCCGGTGA
CTGGATTGCATATCATGTACTTGACCTTCGTGACACTGGCTGCCCTGAGGAGCAGCTTCATCAC
TTTATTTACGCTTGCCTTGAAGTTCATGTGTCACCCAAACAAAGGTACAACCAAGTAAGAACAT
TTCTTTGATTAATACAGAAAGTTAGAAGTTGCCTAGTCTTCAAAGCGTGGCCGCGACATGGGAA
ATGTCAAACGAGTTTATTTCAAATGGGACCATTTAAATACAGGGTTTTGGTGATTTCTCA

hide sequence

RefSeq Acc Id:

XM_005409840 ⟹ XP_005409897

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955527	1,967,232 - 2,049,524 (+)	NCBI

Sequence:

show sequence

GCGCGCTCAGTGCTGTCTTCTGGCCGGAGCCGAGCAGCGGCGGCGGCGTTTGAGTGGAGGAAGA
TGGCGGCTCCGGGTGGTTCGGGGTCCTGGCAGCTGTGAGGACTCCCCAGCACTGCAGACGCGGC
CTGGGGCGAAGTGCCTCTGGTCTGGTCCTGCCCCGGGGTCCCTCACCACTCTCACCAGCGGAGC
GAACCCGAGAACGTGGAGCGGGCCGGGCCAGCTTTGGAGTGGAATGTCATGGCCAGCTCTTCAG
ACAGTGAAGATGACAGTTTCATGGCTGTGGACCAAGAAGAAACTGCGCCGGAAGGGACAATGGA
GCAAGATGAAAACGCCCACCCAGGACTGGAGGTTGAGGAGCCTCGACACAATAGGTCTATGTCA
GAGCTGCCAGAAGAAGTTTTAGAGTATATCTTGTCTTTCCTCTCACCGTATCAGGAGCACAAGA
CTGCGGCCCTCGTCTGCAAACAATGGTATCGACTTATCAAAGGAGTAGCCCATCAGTGTTACCA
TGGTTTCATGAAGGCTGTTCAGGAAGGAAACATTCAGTGGGAGAGCCGCACTTACCCGTACCCT
GGAACCCCAATTACTCAGCGGTTCTCACACAGTGCGTGCTATTATGATGCTAATCAGTCTATGT
ATGTGTTCGGAGGTTGTACCCAGAGCAGCTGTAATGCTGCCTTCAATGACCTCTGGAGACTTGA
CCTCAACAGCAAAGAGTGGATTCGACCCTTGGCTTCAGGCTCTTACCCTTCCCCCAAAGCTGGA
GCAACTCTGGTTGTATACAAGGACTTGCTAGTGCTCTTTGGTGGCTGGACACGACCAAGCCCTT
ATCCTCTGCACCAACCAGAGAGATTCTTTGATGAAATACACACTTACTCACCCTCTAAAAACTG
GTGGAATTGCATTGTAACAACCCATGGGCCACCTCCCATGGCCGGCCACTCCTCCTGTGTGATA
GATGATAAAATGATTGTCTTTGGTGGTTCTTTAGGATCCCGGCAAATGAGCAATGATGTCTGGG
TCCTTGATCTCGAGCAGTGGGCATGGTCCAAGCCGAACATCACCGGCCCCAGTCCTCATCCTCG
AGGTGGTCAATCTCAGATTGTCATAGACAGTGCGACTATCTTAATCCTTGGAGGGTGTGGCGGT
CCCAACGCTCTTTTCAAGGATGCTTGGTTGTTGCACATGCACTCGGGTCCCTGGGCCTGGCAGC
CACTCAAGGTAGAAAATGAAGATCATGGGGCTCCAGAGCTGTGGTGCCATCCAGCCTGCCGGGT
GGGACAGTGTGTGGTGGTCTTCAGCCAGGCTCCCAGCGGGAGAGCGCCCCTCAGCCCCAGTTTG
AACTCTCGCCCATCACCTATCAGTGCCACTCCTCCAGCCCTGGTCCCTGAAACCCGAGAGTACC
GCTCGCAGTCTCCGGTGAGGAGTATGGATGAAGCTCCTTGTGTGAACGGCCGCTGGGGAACACT
GAGGCCCAGGGCTCAAAGGCAGACTCCCTCAGGTTCCCGGGAAGGGAGCCTATCCCCGGCCAGA
GGAGATGGCTCTCCTGTTCTCAATGGTGGGAGTTTATCTCCAGGAACAGCAGCTGTCGGTGGCT
CTTCCCTGGACAGTCCTGTGCAGGCCCTATCTCCAAGCACTCCTTCTGCCGCTGAAGGGTATGA
CCTGAAAGGGGGACTTGCTTTAGCCCCTCGACGAGGGTCGCTGCCAGATCAGAAAGATCTGAGA
CTAGGCTCCATTGATGTGAGTTGGGACCTGAAACCTGCTTCTGGTAGCAATCACGTGGATGGCG
TGGACAACAGGACAGCTGGGGGGAGTGCGAGACACCCTCCAGAACAGACCAATGGCGTGCATAC
CCCTCCACACGTGGCCAGTGCCCTTGTGGGGGCTGTCTCACCCAGTGCCCTGCGCCGGAGTCTG
GAGGCCATCAAAGCAATATCTTCCAAGGGCCCCTCGGCCTCTGCAGCACTGAGTCCTCCTCTTG
GGTCTTCTCCAGGCTCCCCTGGGAGCCAGAGCCTGAGCAGTGGAGAAACAGTACCCATCCCCCG
CCCAGGCCCCACAGGACCTGGCCAAGGAGATGGACATTCCTTACCTCCCATTGCCCGCCGCCTG
GGCCACCACCCGCCACAGTCCCTCAATGTCGGCAAGCCCTTGTACCAGAGTATGAACTGCAAGC
CCATGCAGATGTACGTGCTGGACATTAAAGACACCAAGGAGAAGGGGCGGGTCAAGTGGAAAGT
ATTCAGCAGCGCCTCTGTGGTGGGGCCTCCTGAAACCAGCCTGCACACAGTGGTCCAAGGCAGA
GGTGAGCTCATTATATTCGGAGGACTCATGGACAAGAAGCAGAATGTGAAGTACTATCCAAAAA
CAAACGCCTTGTACTTCGTGCGTGCAAAGAGATAATGTGTCCGGACCCCCTTTCCCTTTCTGTA
GCTTTTAATTTGGAATTTCCCAGTGTGCAAGCTTTTGGACTAAGAATTGGGAAAACAGTTAACA
TTATTCCCATAAACCAAAACTCCAGTGCCCAGTCTAACTCACTCCAGGCTGGGATCAAATCTTC
ATTAAGAAAAAAATTATATATAAAACATATATTATATAACCAACTCTGTTTACAAAAGGGAGAG
ATCTCCGTCCTAGTTCAGATAAAACTGTTGCTGTGTTTTAGCAGAGGCTGTGCTGCCTTTTTCT
ACTTTGCTGATAACTAGACTAAGAGTCACTATGTTTCCAGTAGAAACCGAAGAGCCCCTGTACA
TCTCTCTTTATGTGGCCTTCTCAGAATCAGAGAATGGGAAGGGCACGAATAAGACGCAAAGGAG
CTTTCGGCGCAGCCCCCACTTCTGCAGGTGCTGGCGGGGAAGAGACTCAGAAGGAAACTGCAGA
GGGCCTGTGCCCGCCCTGTCCCCTTCTGCCCTCTGTGACCCAGGGAAGTCACCCAGCAAGGGAT
TTCTTTTTCCAGGTGTGCCAGGATCATCGAGGGGTGCCCACGCAGCCGACATCTGTCCGCCTCC
TGCCCGTTAGTCGTTTGAGTGCTCCCTACATGTCTCAGAAAACATTTGCTATTTGATTATGGAA
TTTCCTGACAATCATGTTCGGTTGCAAGTTCCCAAAACCTATATTTGTTCTCCTTTTCCTTATT
TTAGAATTTTTGTCCCCAGTGGCTACATTTTCCATGTAAAGGCTGCTCTCCACCACACACACAC
CTTTTTTCTTGTGGATTTCCTAAGCCCTAAAGCTTTCTTACTTTGTTTTTTTCACAGAGCTCAG
ATTCCTAGAGAAATCATGCTTCTTAGACGTAGTTCCAGAACACTTTCCCTGGTATCACTGGGGG
GCAAGTAGGGAATTCTAAGATGCTAGTATTGTGAAAGATCTTTGAAGCATTGAAAGGCACTTTT
TCCCTGTGGACTTCTTTTTAGTTCCAGAGCACACTGGGCATGCTCATCCATATTTGTAGAACAT
GGAAATTGGTCCTGGAAAGAATCCTAATAACAGTTCCTTCTAAGAGCCGGGAGGAGTTTGTTCC
CTTCAACATGTGTTCTTGTGCCTGGCTGTTGGCCGGTGACTGGATTGCATATCATGTACTTGAC
CTTCGTGACACTGGCTGCCCTGAGGAGCAGCTTCATCACTTTATTTACGCTTGCCTTGAAGTTC
ATGTGTCACCCAAACAAAGGTACAACCAAGTAAGAACATTTCTTTGATTAATACAGAAAGTTAG
AAGTTGCCTAGTCTTCAAAGCGTGGCCGCGACATGGGAAATGTCAAACGAGTTTATTTCAAATG
GGACCATTTAAATACAGGGTTTTGGTGATTTCTCA

hide sequence

RefSeq Acc Id:

XM_005409841 ⟹ XP_005409898

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955527	1,973,206 - 2,049,524 (+)	NCBI

Sequence:

show sequence

AGGTCATACCATATTGGAACAGATCTGCAGTGGATGAGCGAACCAGAAAGATGTCCACCTTAAA
ACTGAAGCCATGAAATGCTTTGGAGTGGAATGTCATGGCCAGCTCTTCAGACAGTGAAGATGAC
AGTTTCATGGCTGTGGACCAAGAAGAAACTGCGCCGGAAGGGACAATGGAGCAAGATGAAAACG
CCCACCCAGGACTGGAGGTTGAGGAGCCTCGACACAATAGGTCTATGTCAGAGCTGCCAGAAGA
AGTTTTAGAGTATATCTTGTCTTTCCTCTCACCGTATCAGGAGCACAAGACTGCGGCCCTCGTC
TGCAAACAATGGTATCGACTTATCAAAGGAGTAGCCCATCAGTGTTACCATGGTTTCATGAAGG
CTGTTCAGGAAGGAAACATTCAGTGGGAGAGCCGCACTTACCCGTACCCTGGAACCCCAATTAC
TCAGCGGTTCTCACACAGTGCGTGCTATTATGATGCTAATCAGTCTATGTATGTGTTCGGAGGT
TGTACCCAGAGCAGCTGTAATGCTGCCTTCAATGACCTCTGGAGACTTGACCTCAACAGCAAAG
AGTGGATTCGACCCTTGGCTTCAGGCTCTTACCCTTCCCCCAAAGCTGGAGCAACTCTGGTTGT
ATACAAGGACTTGCTAGTGCTCTTTGGTGGCTGGACACGACCAAGCCCTTATCCTCTGCACCAA
CCAGAGAGATTCTTTGATGAAATACACACTTACTCACCCTCTAAAAACTGGTGGAATTGCATTG
TAACAACCCATGGGCCACCTCCCATGGCCGGCCACTCCTCCTGTGTGATAGATGATAAAATGAT
TGTCTTTGGTGGTTCTTTAGGATCCCGGCAAATGAGCAATGATGTCTGGGTCCTTGATCTCGAG
CAGTGGGCATGGTCCAAGCCGAACATCACCGGCCCCAGTCCTCATCCTCGAGGTGGTCAATCTC
AGATTGTCATAGACAGTGCGACTATCTTAATCCTTGGAGGGTGTGGCGGTCCCAACGCTCTTTT
CAAGGATGCTTGGTTGTTGCACATGCACTCGGGTCCCTGGGCCTGGCAGCCACTCAAGGTAGAA
AATGAAGATCATGGGGCTCCAGAGCTGTGGTGCCATCCAGCCTGCCGGGTGGGACAGTGTGTGG
TGGTCTTCAGCCAGGCTCCCAGCGGGAGAGCGCCCCTCAGCCCCAGTTTGAACTCTCGCCCATC
ACCTATCAGTGCCACTCCTCCAGCCCTGGTCCCTGAAACCCGAGAGTACCGCTCGCAGTCTCCG
GTGAGGAGTATGGATGAAGCTCCTTGTGTGAACGGCCGCTGGGGAACACTGAGGCCCAGGGCTC
AAAGGCAGACTCCCTCAGGTTCCCGGGAAGGGAGCCTATCCCCGGCCAGAGGAGATGGCTCTCC
TGTTCTCAATGGTGGGAGTTTATCTCCAGGAACAGCAGCTGTCGGTGGCTCTTCCCTGGACAGT
CCTGTGCAGGCCCTATCTCCAAGCACTCCTTCTGCCGCTGAAGGGTATGACCTGAAAGGGGGAC
TTGCTTTAGCCCCTCGACGAGGGTCGCTGCCAGATCAGAAAGATCTGAGACTAGGCTCCATTGA
TGTGAGTTGGGACCTGAAACCTGCTTCTGGTAGCAATCACGTGGATGGCGTGGACAACAGGACA
GCTGGGGGGAGTGCGAGACACCCTCCAGAACAGACCAATGGCGTGCATACCCCTCCACACGTGG
CCAGTGCCCTTGTGGGGGCTGTCTCACCCAGTGCCCTGCGCCGGAGTCTGGAGGCCATCAAAGC
AATATCTTCCAAGGGCCCCTCGGCCTCTGCAGCACTGAGTCCTCCTCTTGGGTCTTCTCCAGGC
TCCCCTGGGAGCCAGAGCCTGAGCAGTGGAGAAACAGTACCCATCCCCCGCCCAGGCCCCACAG
GACCTGGCCAAGGAGATGGACATTCCTTACCTCCCATTGCCCGCCGCCTGGGCCACCACCCGCC
ACAGTCCCTCAATGTCGGCAAGCCCTTGTACCAGAGTATGAACTGCAAGCCCATGCAGATGTAC
GTGCTGGACATTAAAGACACCAAGGAGAAGGGGCGGGTCAAGTGGAAAGTATTCAGCAGCGCCT
CTGTGGTGGGGCCTCCTGAAACCAGCCTGCACACAGTGGTCCAAGGCAGAGGTGAGCTCATTAT
ATTCGGAGGACTCATGGACAAGAAGCAGAATGTGAAGTACTATCCAAAAACAAACGCCTTGTAC
TTCGTGCGTGCAAAGAGATAATGTGTCCGGACCCCCTTTCCCTTTCTGTAGCTTTTAATTTGGA
ATTTCCCAGTGTGCAAGCTTTTGGACTAAGAATTGGGAAAACAGTTAACATTATTCCCATAAAC
CAAAACTCCAGTGCCCAGTCTAACTCACTCCAGGCTGGGATCAAATCTTCATTAAGAAAAAAAT
TATATATAAAACATATATTATATAACCAACTCTGTTTACAAAAGGGAGAGATCTCCGTCCTAGT
TCAGATAAAACTGTTGCTGTGTTTTAGCAGAGGCTGTGCTGCCTTTTTCTACTTTGCTGATAAC
TAGACTAAGAGTCACTATGTTTCCAGTAGAAACCGAAGAGCCCCTGTACATCTCTCTTTATGTG
GCCTTCTCAGAATCAGAGAATGGGAAGGGCACGAATAAGACGCAAAGGAGCTTTCGGCGCAGCC
CCCACTTCTGCAGGTGCTGGCGGGGAAGAGACTCAGAAGGAAACTGCAGAGGGCCTGTGCCCGC
CCTGTCCCCTTCTGCCCTCTGTGACCCAGGGAAGTCACCCAGCAAGGGATTTCTTTTTCCAGGT
GTGCCAGGATCATCGAGGGGTGCCCACGCAGCCGACATCTGTCCGCCTCCTGCCCGTTAGTCGT
TTGAGTGCTCCCTACATGTCTCAGAAAACATTTGCTATTTGATTATGGAATTTCCTGACAATCA
TGTTCGGTTGCAAGTTCCCAAAACCTATATTTGTTCTCCTTTTCCTTATTTTAGAATTTTTGTC
CCCAGTGGCTACATTTTCCATGTAAAGGCTGCTCTCCACCACACACACACCTTTTTTCTTGTGG
ATTTCCTAAGCCCTAAAGCTTTCTTACTTTGTTTTTTTCACAGAGCTCAGATTCCTAGAGAAAT
CATGCTTCTTAGACGTAGTTCCAGAACACTTTCCCTGGTATCACTGGGGGGCAAGTAGGGAATT
CTAAGATGCTAGTATTGTGAAAGATCTTTGAAGCATTGAAAGGCACTTTTTCCCTGTGGACTTC
TTTTTAGTTCCAGAGCACACTGGGCATGCTCATCCATATTTGTAGAACATGGAAATTGGTCCTG
GAAAGAATCCTAATAACAGTTCCTTCTAAGAGCCGGGAGGAGTTTGTTCCCTTCAACATGTGTT
CTTGTGCCTGGCTGTTGGCCGGTGACTGGATTGCATATCATGTACTTGACCTTCGTGACACTGG
CTGCCCTGAGGAGCAGCTTCATCACTTTATTTACGCTTGCCTTGAAGTTCATGTGTCACCCAAA
CAAAGGTACAACCAAGTAAGAACATTTCTTTGATTAATACAGAAAGTTAGAAGTTGCCTAGTCT
TCAAAGCGTGGCCGCGACATGGGAAATGTCAAACGAGTTTATTTCAAATGGGACCATTTAAATA
CAGGGTTTTGGTGATTTCTCA

hide sequence

RefSeq Acc Id:

XM_013507387 ⟹ XP_013362841

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955527	1,973,205 - 2,049,524 (+)	NCBI

Sequence:

show sequence

GAGGTCATACCATATTGGAACAGATCTGCAGTGGATGAGCGAACCAGAAAGATGTCCACCTTAA
AACTGAAGCCATGAAATGAAGCCTGCTTGGTGGTGTGCACACCTTGTTATCCCAGCACTCTGGA
AGGTTGAGACAGGAGGATCCTAAGTTCAAGGCCTACTTGGGCAATTTGCTTTGGAGTGGAATGT
CATGGCCAGCTCTTCAGACAGTGAAGATGACAGTTTCATGGCTGTGGACCAAGAAGAAACTGCG
CCGGAAGGGACAATGGAGCAAGATGAAAACGCCCACCCAGGACTGGAGGTTGAGGAGCCTCGAC
ACAATAGGTCTATGTCAGAGCTGCCAGAAGAAGTTTTAGAGTATATCTTGTCTTTCCTCTCACC
GTATCAGGAGCACAAGACTGCGGCCCTCGTCTGCAAACAATGGTATCGACTTATCAAAGGAGTA
GCCCATCAGTGTTACCATGGTTTCATGAAGGCTGTTCAGGAAGGAAACATTCAGTGGGAGAGCC
GCACTTACCCGTACCCTGGAACCCCAATTACTCAGCGGTTCTCACACAGTGCGTGCTATTATGA
TGCTAATCAGTCTATGTATGTGTTCGGAGGTTGTACCCAGAGCAGCTGTAATGCTGCCTTCAAT
GACCTCTGGAGACTTGACCTCAACAGCAAAGAGTGGATTCGACCCTTGGCTTCAGGCTCTTACC
CTTCCCCCAAAGCTGGAGCAACTCTGGTTGTATACAAGGACTTGCTAGTGCTCTTTGGTGGCTG
GACACGACCAAGCCCTTATCCTCTGCACCAACCAGAGAGATTCTTTGATGAAATACACACTTAC
TCACCCTCTAAAAACTGGTGGAATTGCATTGTAACAACCCATGGGCCACCTCCCATGGCCGGCC
ACTCCTCCTGTGTGATAGATGATAAAATGATTGTCTTTGGTGGTTCTTTAGGATCCCGGCAAAT
GAGCAATGATGTCTGGGTCCTTGATCTCGAGCAGTGGGCATGGTCCAAGCCGAACATCACCGGC
CCCAGTCCTCATCCTCGAGGTGGTCAATCTCAGATTGTCATAGACAGTGCGACTATCTTAATCC
TTGGAGGGTGTGGCGGTCCCAACGCTCTTTTCAAGGATGCTTGGTTGTTGCACATGCACTCGGG
TCCCTGGGCCTGGCAGCCACTCAAGGTAGAAAATGAAGATCATGGGGCTCCAGAGCTGTGGTGC
CATCCAGCCTGCCGGGTGGGACAGTGTGTGGTGGTCTTCAGCCAGGCTCCCAGCGGGAGAGCGC
CCCTCAGCCCCAGTTTGAACTCTCGCCCATCACCTATCAGTGCCACTCCTCCAGCCCTGGTCCC
TGAAACCCGAGAGTACCGCTCGCAGTCTCCGGTGAGGAGTATGGATGAAGCTCCTTGTGTGAAC
GGCCGCTGGGGAACACTGAGGCCCAGGGCTCAAAGGCAGACTCCCTCAGGTTCCCGGGAAGGGA
GCCTATCCCCGGCCAGAGGAGATGGCTCTCCTGTTCTCAATGGTGGGAGTTTATCTCCAGGAAC
AGCAGCTGTCGGTGGCTCTTCCCTGGACAGTCCTGTGCAGGCCCTATCTCCAAGCACTCCTTCT
GCCGCTGAAGGGTATGACCTGAAAGGGGGACTTGCTTTAGCCCCTCGACGAGGGTCGCTGCCAG
ATCAGAAAGATCTGAGACTAGGCTCCATTGATGTGAGTTGGGACCTGAAACCTGCTTCTGGTAG
CAATCACGTGGATGGCGTGGACAACAGGACAGCTGGGGGGAGTGCGAGACACCCTCCAGAACAG
ACCAATGGCGTGCATACCCCTCCACACGTGGCCAGTGCCCTTGTGGGGGCTGTCTCACCCAGTG
CCCTGCGCCGGAGTCTGGAGGCCATCAAAGCAATATCTTCCAAGGGCCCCTCGGCCTCTGCAGC
ACTGAGTCCTCCTCTTGGGTCTTCTCCAGGCTCCCCTGGGAGCCAGAGCCTGAGCAGTGGAGAA
ACAGTACCCATCCCCCGCCCAGGCCCCACAGGACCTGGCCAAGGAGATGGACATTCCTTACCTC
CCATTGCCCGCCGCCTGGGCCACCACCCGCCACAGTCCCTCAATGTCGGCAAGCCCTTGTACCA
GAGTATGAACTGCAAGCCCATGCAGATGTACGTGCTGGACATTAAAGACACCAAGGAGAAGGGG
CGGGTCAAGTGGAAAGTATTCAGCAGCGCCTCTGTGGTGGGGCCTCCTGAAACCAGCCTGCACA
CAGTGGTCCAAGGCAGAGGTGAGCTCATTATATTCGGAGGACTCATGGACAAGAAGCAGAATGT
GAAGTACTATCCAAAAACAAACGCCTTGTACTTCGTGCGTGCAAAGAGATAATGTGTCCGGACC
CCCTTTCCCTTTCTGTAGCTTTTAATTTGGAATTTCCCAGTGTGCAAGCTTTTGGACTAAGAAT
TGGGAAAACAGTTAACATTATTCCCATAAACCAAAACTCCAGTGCCCAGTCTAACTCACTCCAG
GCTGGGATCAAATCTTCATTAAGAAAAAAATTATATATAAAACATATATTATATAACCAACTCT
GTTTACAAAAGGGAGAGATCTCCGTCCTAGTTCAGATAAAACTGTTGCTGTGTTTTAGCAGAGG
CTGTGCTGCCTTTTTCTACTTTGCTGATAACTAGACTAAGAGTCACTATGTTTCCAGTAGAAAC
CGAAGAGCCCCTGTACATCTCTCTTTATGTGGCCTTCTCAGAATCAGAGAATGGGAAGGGCACG
AATAAGACGCAAAGGAGCTTTCGGCGCAGCCCCCACTTCTGCAGGTGCTGGCGGGGAAGAGACT
CAGAAGGAAACTGCAGAGGGCCTGTGCCCGCCCTGTCCCCTTCTGCCCTCTGTGACCCAGGGAA
GTCACCCAGCAAGGGATTTCTTTTTCCAGGTGTGCCAGGATCATCGAGGGGTGCCCACGCAGCC
GACATCTGTCCGCCTCCTGCCCGTTAGTCGTTTGAGTGCTCCCTACATGTCTCAGAAAACATTT
GCTATTTGATTATGGAATTTCCTGACAATCATGTTCGGTTGCAAGTTCCCAAAACCTATATTTG
TTCTCCTTTTCCTTATTTTAGAATTTTTGTCCCCAGTGGCTACATTTTCCATGTAAAGGCTGCT
CTCCACCACACACACACCTTTTTTCTTGTGGATTTCCTAAGCCCTAAAGCTTTCTTACTTTGTT
TTTTTCACAGAGCTCAGATTCCTAGAGAAATCATGCTTCTTAGACGTAGTTCCAGAACACTTTC
CCTGGTATCACTGGGGGGCAAGTAGGGAATTCTAAGATGCTAGTATTGTGAAAGATCTTTGAAG
CATTGAAAGGCACTTTTTCCCTGTGGACTTCTTTTTAGTTCCAGAGCACACTGGGCATGCTCAT
CCATATTTGTAGAACATGGAAATTGGTCCTGGAAAGAATCCTAATAACAGTTCCTTCTAAGAGC
CGGGAGGAGTTTGTTCCCTTCAACATGTGTTCTTGTGCCTGGCTGTTGGCCGGTGACTGGATTG
CATATCATGTACTTGACCTTCGTGACACTGGCTGCCCTGAGGAGCAGCTTCATCACTTTATTTA
CGCTTGCCTTGAAGTTCATGTGTCACCCAAACAAAGGTACAACCAAGTAAGAACATTTCTTTGA
TTAATACAGAAAGTTAGAAGTTGCCTAGTCTTCAAAGCGTGGCCGCGACATGGGAAATGTCAAA
CGAGTTTATTTCAAATGGGACCATTTAAATACAGGGTTTTGGTGATTTCTCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005409895	(Get FASTA)	NCBI Sequence Viewer
	XP_005409896	(Get FASTA)	NCBI Sequence Viewer
	XP_005409897	(Get FASTA)	NCBI Sequence Viewer
	XP_005409898	(Get FASTA)	NCBI Sequence Viewer
	XP_013362841	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000003070
	ENSCLAP00000003070.1

RefSeq Acc Id:

XP_005409896 ⟸ XM_005409839

- UniProtKB:

A0A8C2YJE4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASSSDSEDDSFMAVDQEETAPEGTMEQDENAHPGLEVEEPRHNRSMSELPEEVLEYILSFLSP
YQEHKTAALVCKQWYRLIKGVAHQCYHGFMKAVQEGNIQWESRTYPYPGTPITQRFSHSACYYD
ANQSMYVFGGCTQSSCNAAFNDLWRLDLNSKEWIRPLASGSYPSPKAGATLVVYKDLLVLFGGW
TRPSPYPLHQPERFFDEIHTYSPSKNWWNCIVTTHGPPPMAGHSSCVIDDKMIVFGGSLGSRQM
SNDVWVLDLEQWAWSKPNITGPSPHPRGGQSQIVIDSATILILGGCGGPNALFKDAWLLHMHSG
PWAWQPLKVENEDHGAPELWCHPACRVGQCVVVFSQAPSGRAPLSPSLNSRPSPISATPPALVP
ETREYRSQSPVRSMDEAPCVNGRWGTLRPRAQRQTPSGSREGSLSPARGDGSPVLNGGSLSPGT
AAVGGSSLDSPVQALSPSTPSAAEGYDLKGGLALAPRRGSLPDQKDLRLGSIDVSWDLKPASGS
NHVDGVDNRTAGGSARHPPEQTNGVHTPPHVASALVGAVSPSALRRSLEAIKAISSKGPSASAA
LSPPLGSSPGSPGSQSLSSGETVPIPRPGPTGPGQGDGHSLPPIARRLGHHPPQSLNVGKPLYQ
SMNCKPMQMYVLDIKDTKEKGRVKWKVFSSASVVGPPETSLHTVVQGRGELIIFGGLMDKKQNV
KYYPKTNALYFVRAKR

hide sequence

RefSeq Acc Id:

XP_005409895 ⟸ XM_005409838

- UniProtKB:

A0A8C2YJE4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASSSDSEDDSFMAVDQEETAPEGTMEQDENAHPGLEVEEPRHNRSMSELPEEVLEYILSFLSP
YQEHKTAALVCKQWYRLIKGVAHQCYHGFMKAVQEGNIQWESRTYPYPGTPITQRFSHSACYYD
ANQSMYVFGGCTQSSCNAAFNDLWRLDLNSKEWIRPLASGSYPSPKAGATLVVYKDLLVLFGGW
TRPSPYPLHQPERFFDEIHTYSPSKNWWNCIVTTHGPPPMAGHSSCVIDDKMIVFGGSLGSRQM
SNDVWVLDLEQWAWSKPNITGPSPHPRGGQSQIVIDSATILILGGCGGPNALFKDAWLLHMHSG
PWAWQPLKVENEDHGAPELWCHPACRVGQCVVVFSQAPSGRAPLSPSLNSRPSPISATPPALVP
ETREYRSQSPVRSMDEAPCVNGRWGTLRPRAQRQTPSGSREGSLSPARGDGSPVLNGGSLSPGT
AAVGGSSLDSPVQALSPSTPSAAEGYDLKGGLALAPRRGSLPDQKDLRLGSIDVSWDLKPASGS
NHVDGVDNRTAGGSARHPPEQTNGVHTPPHVASALVGAVSPSALRRSLEAIKAISSKGPSASAA
LSPPLGSSPGSPGSQSLSSGETVPIPRPGPTGPGQGDGHSLPPIARRLGHHPPQSLNVGKPLYQ
SMNCKPMQMYVLDIKDTKEKGRVKWKVFSSASVVGPPETSLHTVVQGRGELIIFGGLMDKKQNV
KYYPKTNALYFVRAKR

hide sequence

RefSeq Acc Id:

XP_005409897 ⟸ XM_005409840

- UniProtKB:

A0A8C2YJE4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASSSDSEDDSFMAVDQEETAPEGTMEQDENAHPGLEVEEPRHNRSMSELPEEVLEYILSFLSP
YQEHKTAALVCKQWYRLIKGVAHQCYHGFMKAVQEGNIQWESRTYPYPGTPITQRFSHSACYYD
ANQSMYVFGGCTQSSCNAAFNDLWRLDLNSKEWIRPLASGSYPSPKAGATLVVYKDLLVLFGGW
TRPSPYPLHQPERFFDEIHTYSPSKNWWNCIVTTHGPPPMAGHSSCVIDDKMIVFGGSLGSRQM
SNDVWVLDLEQWAWSKPNITGPSPHPRGGQSQIVIDSATILILGGCGGPNALFKDAWLLHMHSG
PWAWQPLKVENEDHGAPELWCHPACRVGQCVVVFSQAPSGRAPLSPSLNSRPSPISATPPALVP
ETREYRSQSPVRSMDEAPCVNGRWGTLRPRAQRQTPSGSREGSLSPARGDGSPVLNGGSLSPGT
AAVGGSSLDSPVQALSPSTPSAAEGYDLKGGLALAPRRGSLPDQKDLRLGSIDVSWDLKPASGS
NHVDGVDNRTAGGSARHPPEQTNGVHTPPHVASALVGAVSPSALRRSLEAIKAISSKGPSASAA
LSPPLGSSPGSPGSQSLSSGETVPIPRPGPTGPGQGDGHSLPPIARRLGHHPPQSLNVGKPLYQ
SMNCKPMQMYVLDIKDTKEKGRVKWKVFSSASVVGPPETSLHTVVQGRGELIIFGGLMDKKQNV
KYYPKTNALYFVRAKR

hide sequence

RefSeq Acc Id:

XP_005409898 ⟸ XM_005409841

- UniProtKB:

A0A8C2YJE4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASSSDSEDDSFMAVDQEETAPEGTMEQDENAHPGLEVEEPRHNRSMSELPEEVLEYILSFLSP
YQEHKTAALVCKQWYRLIKGVAHQCYHGFMKAVQEGNIQWESRTYPYPGTPITQRFSHSACYYD
ANQSMYVFGGCTQSSCNAAFNDLWRLDLNSKEWIRPLASGSYPSPKAGATLVVYKDLLVLFGGW
TRPSPYPLHQPERFFDEIHTYSPSKNWWNCIVTTHGPPPMAGHSSCVIDDKMIVFGGSLGSRQM
SNDVWVLDLEQWAWSKPNITGPSPHPRGGQSQIVIDSATILILGGCGGPNALFKDAWLLHMHSG
PWAWQPLKVENEDHGAPELWCHPACRVGQCVVVFSQAPSGRAPLSPSLNSRPSPISATPPALVP
ETREYRSQSPVRSMDEAPCVNGRWGTLRPRAQRQTPSGSREGSLSPARGDGSPVLNGGSLSPGT
AAVGGSSLDSPVQALSPSTPSAAEGYDLKGGLALAPRRGSLPDQKDLRLGSIDVSWDLKPASGS
NHVDGVDNRTAGGSARHPPEQTNGVHTPPHVASALVGAVSPSALRRSLEAIKAISSKGPSASAA
LSPPLGSSPGSPGSQSLSSGETVPIPRPGPTGPGQGDGHSLPPIARRLGHHPPQSLNVGKPLYQ
SMNCKPMQMYVLDIKDTKEKGRVKWKVFSSASVVGPPETSLHTVVQGRGELIIFGGLMDKKQNV
KYYPKTNALYFVRAKR

hide sequence

RefSeq Acc Id:

XP_013362841 ⟸ XM_013507387

- UniProtKB:

A0A8C2YJE4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASSSDSEDDSFMAVDQEETAPEGTMEQDENAHPGLEVEEPRHNRSMSELPEEVLEYILSFLSP
YQEHKTAALVCKQWYRLIKGVAHQCYHGFMKAVQEGNIQWESRTYPYPGTPITQRFSHSACYYD
ANQSMYVFGGCTQSSCNAAFNDLWRLDLNSKEWIRPLASGSYPSPKAGATLVVYKDLLVLFGGW
TRPSPYPLHQPERFFDEIHTYSPSKNWWNCIVTTHGPPPMAGHSSCVIDDKMIVFGGSLGSRQM
SNDVWVLDLEQWAWSKPNITGPSPHPRGGQSQIVIDSATILILGGCGGPNALFKDAWLLHMHSG
PWAWQPLKVENEDHGAPELWCHPACRVGQCVVVFSQAPSGRAPLSPSLNSRPSPISATPPALVP
ETREYRSQSPVRSMDEAPCVNGRWGTLRPRAQRQTPSGSREGSLSPARGDGSPVLNGGSLSPGT
AAVGGSSLDSPVQALSPSTPSAAEGYDLKGGLALAPRRGSLPDQKDLRLGSIDVSWDLKPASGS
NHVDGVDNRTAGGSARHPPEQTNGVHTPPHVASALVGAVSPSALRRSLEAIKAISSKGPSASAA
LSPPLGSSPGSPGSQSLSSGETVPIPRPGPTGPGQGDGHSLPPIARRLGHHPPQSLNVGKPLYQ
SMNCKPMQMYVLDIKDTKEKGRVKWKVFSSASVVGPPETSLHTVVQGRGELIIFGGLMDKKQNV
KYYPKTNALYFVRAKR

hide sequence

RefSeq Acc Id:

ENSCLAP00000003070 ⟸ ENSCLAT00000003134

Protein Domains

F-box

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000002198	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000003134	ENTREZGENE
	ENSCLAT00000003134.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1280.50	UniProtKB/TrEMBL
	2.120.10.80	UniProtKB/TrEMBL
InterPro	F-box-like_dom_sf	UniProtKB/TrEMBL
	F-box_dom	UniProtKB/TrEMBL
	Kelch-typ_b-propeller	UniProtKB/TrEMBL
NCBI Gene	Fbxo42	ENTREZGENE
PANTHER	F-BOX ONLY PROTEIN 42	UniProtKB/TrEMBL
	F-BOX ONLY PROTEIN 42	UniProtKB/TrEMBL
Pfam	F-box-like	UniProtKB/TrEMBL
	Kelch_3	UniProtKB/TrEMBL
	Kelch_5	UniProtKB/TrEMBL
PROSITE	FBOX	UniProtKB/TrEMBL
SMART	FBOX	UniProtKB/TrEMBL
Superfamily-SCOP	SSF117281	UniProtKB/TrEMBL
	SSF81383	UniProtKB/TrEMBL
UniProt	A0A8C2YJE4	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar