Ccdc61 (coiled-coil domain containing 61) - Rat Genome Database

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Gene: Ccdc61 (coiled-coil domain containing 61) Chinchilla lanigera
Analyze
Symbol: Ccdc61
Name: coiled-coil domain containing 61
RGD ID: 8977220
Description: ENCODES a protein that exhibits identical protein binding (ortholog); microtubule binding (ortholog); INVOLVED IN centriole assembly (ortholog); mitotic spindle assembly (ortholog); FOUND IN centriolar satellite (ortholog); centriolar subdistal appendage (ortholog); centrosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil domain-containing protein 61
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955574387,070 - 423,526 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ccdc61
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955574387,070 - 423,526 (+)NCBIChiLan1.0ChiLan1.0
CCDC61
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381945,995,467 - 46,018,616 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1945,995,461 - 46,021,318 (+)EnsemblGRCh38hg38GRCh38
GRCh371946,498,725 - 46,521,874 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361951,190,179 - 51,213,714 (+)NCBINCBI36Build 36hg18NCBI36
Celera1943,303,349 - 43,326,887 (+)NCBICelera
Cytogenetic Map19q13.32NCBI
HuRef1942,926,719 - 42,949,871 (+)NCBIHuRef
CHM1_11946,501,092 - 46,524,249 (+)NCBICHM1_1
T2T-CHM13v2.01948,822,934 - 48,846,071 (+)NCBIT2T-CHM13v2.0
Ccdc61
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39718,624,808 - 18,644,417 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl718,624,808 - 18,644,340 (-)EnsemblGRCm39 Ensembl
GRCm38718,890,883 - 18,910,414 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl718,890,883 - 18,910,415 (-)EnsemblGRCm38mm10GRCm38
MGSCv37719,476,233 - 19,495,753 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36718,049,406 - 18,068,926 (-)NCBIMGSCv36mm8
Celera716,301,616 - 16,321,405 (-)NCBICelera
Cytogenetic Map7A3NCBI
cM Map79.38NCBI
Ccdc61
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8187,665,541 - 87,685,732 (-)NCBIGRCr8
mRatBN7.2178,537,494 - 78,557,686 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl178,537,494 - 78,557,686 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx183,926,573 - 83,946,418 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0192,483,808 - 92,504,040 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0185,681,683 - 85,701,528 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0179,796,557 - 79,816,536 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl179,795,375 - 79,816,450 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0181,057,905 - 81,077,772 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4178,241,158 - 78,261,349 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1178,319,472 - 78,336,523 (-)NCBI
Celera173,004,322 - 73,023,832 (-)NCBICelera
Cytogenetic Map1q21NCBI
CCDC61
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22052,165,730 - 52,188,929 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11954,037,004 - 54,060,177 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01943,009,365 - 43,032,543 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11951,548,934 - 51,568,738 (+)NCBIpanpan1.1PanPan1.1panPan2
CCDC61
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11109,614,720 - 109,643,032 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1109,618,771 - 109,642,612 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1109,098,447 - 109,126,279 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01110,147,247 - 110,174,136 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1110,147,166 - 110,170,168 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11109,821,877 - 109,849,691 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01109,456,602 - 109,484,435 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01110,325,346 - 110,353,181 (-)NCBIUU_Cfam_GSD_1.0
Ccdc61
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934917,948,989 - 17,969,129 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367062,303,579 - 2,316,248 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367062,296,401 - 2,316,472 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC61
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl652,294,535 - 52,318,003 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1652,294,518 - 52,318,006 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2647,556,766 - 47,579,502 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC61
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1639,449,358 - 39,473,560 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl639,457,566 - 39,473,323 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607319,093,778 - 19,117,906 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc61
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248327,225,454 - 7,238,988 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248327,213,530 - 7,245,227 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013509570   ⟹   XP_013365024
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955574387,070 - 423,526 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013365024 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_013365024   ⟸   XM_013509570
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Ccdc61 ENTREZGENE