Sri (sorcin) - Rat Genome Database

Name: Sri
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Sri (sorcin) Chinchilla lanigera

Analyze

Symbol:

Sri

Name:

sorcin

RGD ID:

8974164

Description:

ENCODES a protein that exhibits calcium ion binding (ortholog); DNA-binding transcription factor binding (ortholog); identical protein binding (ortholog); INVOLVED IN calcium ion transport (ortholog); heart development (ortholog); negative regulation of cardiac muscle contraction (ortholog); ASSOCIATED WITH Cardiomegaly (ortholog); congestive heart failure (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN axon (ortholog); axon terminus (ortholog); chromaffin granule membrane (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SRI (sorcin)	NCBI	Ortholog
Mus musculus (house mouse):	Sri (sorcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Sri (sorcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SRI (sorcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SRI (sorcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sri (sorcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SRI (sorcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SRI (sorcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sri (sorcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955432	5,541,311 - 5,560,294 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955432	5,541,311 - 5,559,781 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Cardiomegaly (ISO)

congestive heart failure (ISO)

Experimental Liver Cirrhosis (ISO)

genetic disease (ISO)

pleomorphic xanthoastrocytoma (ISO)

Weight Gain (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

calcium ion transport (ISO)

heart development (ISO)

negative regulation of cardiac muscle contraction (ISO)

negative regulation of heart rate (ISO)

positive regulation of insulin secretion involved in cellular response to glucose stimulus (ISO)

positive regulation of release of sequestered calcium ion into cytosol (ISO)

regulation of calcium ion transport (ISO)

regulation of cardiac muscle cell contraction (ISO)

regulation of cell communication by electrical coupling involved in cardiac conduction (ISO)

regulation of relaxation of muscle (ISO)

Cellular Component

axon (ISO)

axon terminus (ISO)

chromaffin granule membrane (ISO)

cytosol (ISO)

dendritic spine neck (ISO)

endoplasmic reticulum membrane (ISO)

extracellular exosome (ISO)

membrane (ISO)

nucleoplasm (ISO)

plasma membrane (ISO)

T-tubule (ISO)

vesicle (ISO)

Z disc (ISO)

Molecular Function

calcium ion binding (ISO)

DNA-binding transcription factor binding (ISO)

identical protein binding (ISO)

protease binding (ISO)

protein binding (ISO)

protein heterodimerization activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Sri
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955432	5,541,311 - 5,560,294 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955432	5,541,311 - 5,559,781 (-)	NCBI	ChiLan1.0	ChiLan1.0

SRI
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	88,205,115 - 88,226,976 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	88,205,115 - 88,226,993 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	87,834,430 - 87,856,291 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	87,672,368 - 87,694,244 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	7	82,539,034 - 82,560,910 (-)	NCBI		Celera
Cytogenetic Map	7	q21.12	NCBI
HuRef	7	82,444,285 - 82,466,161 (-)	NCBI		HuRef
CHM1_1	7	87,764,960 - 87,786,830 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	89,455,604 - 89,477,464 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	87,165,789 - 87,187,665 (-)	NCBI

Sri
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	8,096,078 - 8,119,314 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	8,096,078 - 8,119,379 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	8,046,078 - 8,069,314 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	8,046,078 - 8,069,379 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	8,046,080 - 8,069,245 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	8,052,084 - 8,073,860 (+)	NCBI		MGSCv36	mm8
Celera	5	7,979,518 - 8,002,729 (+)	NCBI		Celera
Cytogenetic Map	5	A1	NCBI
cM Map	5	3.38	NCBI

Sri
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	26,928,338 - 26,952,980 (-)	NCBI		GRCr8
mRatBN7.2	4	25,973,493 - 25,997,879 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	25,966,750 - 25,998,077 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	30,960,404 - 30,973,377 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	26,886,620 - 26,899,593 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	25,263,902 - 25,276,454 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	23,004,657 - 23,029,233 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	23,006,243 - 23,018,983 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	22,937,276 - 22,962,347 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	4	21,457,445 - 21,469,637 (-)	NCBI		Celera
Cytogenetic Map	4	q12	NCBI

SRI
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	106,086,942 - 106,101,957 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	154,351,580 - 154,366,595 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	80,199,719 - 80,214,733 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	93,849,129 - 93,864,088 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	93,850,496 - 93,864,029 (-)	Ensembl	panpan1.1		panPan2

SRI
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	14	14,257,375 - 14,274,816 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	14	14,260,052 - 14,274,801 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	14	13,829,493 - 13,846,925 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	14	14,022,300 - 14,039,737 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	14	14,020,645 - 14,039,218 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	14	14,232,295 - 14,250,007 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	14	13,951,888 - 13,969,513 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	14	14,237,364 - 14,255,079 (-)	NCBI		UU_Cfam_GSD_1.0

Sri
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	27,273,150 - 27,285,562 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936763	710,777 - 730,276 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936763	715,884 - 728,548 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SRI
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	68,490,890 - 68,515,322 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	68,492,235 - 68,515,247 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	74,928,185 - 74,950,459 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SRI
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	60,730,164 - 60,751,054 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	60,730,051 - 60,749,678 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666042	43,353,983 - 43,369,330 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sri
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624809	5,160,737 - 5,191,514 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624809	5,160,731 - 5,187,914 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005387978	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005387979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013516016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01030786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCQ01042054	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000006661 ⟹ ENSCLAP00000006553

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955432	5,541,311 - 5,560,294 (-)	Ensembl

RefSeq Acc Id:

ENSCLAT00000006662 ⟹ ENSCLAP00000006554

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955432	5,541,311 - 5,560,294 (-)	Ensembl

RefSeq Acc Id:

XM_005387978 ⟹ XP_005388035

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955432	5,541,311 - 5,556,659 (-)	NCBI

Sequence:

show sequence

GGGCGTGGTCTTGGGCGGGGCCGCGCTGGGTGCGGCGGGCGGCGGCGAGCAGTCGGCACCATGG
CGTACCCTGGACATCCCGGCGCGGGCGGCGGCTATTACCCAGGCGGGTACGGAGGTGCGCCCGG
AGGCCCGGCCTTTCCCGCGCAGACGCAGGACCCACTGTATGGCTACTTCGCTGCGGTGGCCGGA
CAGGATGGGCAAATTGATGCTGATGAATTACAGAGATGTCTCACGCAGTCGGGCATTGCTGGAG
GATACAAACCTTTTAACCTGGAGACTTGTCGGCTTATGGTTTCAATGCTGGATAGAGATATGTC
CGGCACAATGGGGTTCACCGAGTTTAAGGAACTCTGGGCGGTGCTGAATGGCTGGAGGCAGCAC
TTCATCAGCTTCGACAGTGACCGCAGCGGCACGGTGGACCCGCATGAGCTGCAGAAGGCGCTGA
CCACGATGGGATTTAGGTTAAATCCTCAAACTGTGAATTCGATCGCAAAACGGTACAGCACCAA
CGGGAAGATCACCTTCGACGACTACATCGCCTGCTGCGTGAGGCTGAGGGCGTTCACAGATAAC
TTTCGAAGACGGGATTCTGCTCAGCAAGGTGTTGTGAATTTCTCATATGACGATTTCATTCAGT
GTGTCATGACTGTCTAAGTCAAGAGGAAGCTGTCGAACATAACATTCCAGCTGCAGTGCATGTG
TGCTTCCTCTTTGCCTTTAGTAACCTGCGTGGACTTCCGTCGTCGTCGCTGCTTTCCCCAACAG
CCGTTGCAAGGTTTATTACTCCACACAATTGAAGTTTTTAGTTTTGATAAGGAATTCTTTGGAA
TTTTGATAATATAAAGTCAAATCTGCTATACCAATTAGAAGTTCCCTAACTCATTATCAACCAT
GCCTTATTTTCCTGCTAACCCTCTTTATATGAGTATGGAGAATGTTCAAGGTGCATTATATGCT
TTTCATTATGATGGGAAAAATTTTTAATTAAACTACAGCTGTGTACCTTTCCTCCCCGAGAGGA
ATATGGTTGAAAATGTGTGGTGCATTCTTATGTAAATGATGTAGATCCTCTTGGATGCAGAAAA
CAAACCAATATGGTCATCTATGTCAAGGTTTTATTTAAACTTACACATATTTTGATGACCTTAT
CAGTGAACCGGGAACACTTCAGTGATTATCTTCTGCCTCCTTAATTTGAATGGCAAATACTGTC
ACCAAGTTCTTTGTCATCACGCATTCAAACCTTTAATATACTTAAAAATCCTAGAAAGCTTAGC
TGTAGAAAAAATGGATAGAAAAAGACTAAGGGAATATATTAAAATATTAACTATGGTTGTTTTT
GACTATACGATTCCAAGTGACTAGTTTCATTTACACATTTCACCATTTTCCAGATTTTCTATAT
GGACTCTTCCATTCTCAAATCAGAAGATACACTAATTTTTAAAGTACTGATACATCCATTTGGA
TATGTGACATATTTATACTTTTAATAATATACGGCAAAAAGACTGGAATAGGTGTCCCAAAATG
TTCGTCTAGCAACCACTGGGAGACAGAGTAATGGGTTTATTTCCTTTTTTCCTAACAGTTTTCC
AAATACTCTAATAAGCAAGTATTATATATAATAGAAGACATTTTTTAAAAATTATTTCAGTAAG
GTCTAGATTCCAGTGCTGTCTGTGCCTCTCATTTGTGGCTGGGTCATTTTTGATAACTCCAGGA
GTCTGTTTCCCTGATTTCGACAAGGACATAGGACTTACCTCTTGGGGTACCTTGAGATTTGAAA
AAGTGTGTGGTACAACTAGCATCAACAGCATTGCGTTTCTTAAATTTAAAATTGGCCTGGTTTG
CCTTTTCTCCCCCAAGAGTTTTACAGATAAAAAGTGGTCCTATTCTACTTCCTCCTTGCCGGCA
GTGTATTTGTCCTCTTTTAGGGCACAATGTGAGCATGTCCATTCAAGTGAACAATTCGTTGTCC
ACTAATGACAATAAAAGTTTTCTTTGAGCTTCTTTAGCCTCATTTTACTAACACATTTTCAAAT
AGTGCATGCATATATGTATATAGAGAGAGAGAGTAAATCTTTACTGAACCCTAATTTGTTTTCA
TGGCAAGTAGTTACGGCCAGATTAGAGGTCAGCGTGAAGCAGCCTGCTGTGTCTTGCATGGTGC
ATCTAGGTTGCATCCAGGACCTAGTGTCTGTGCAGCCACAAAGCCTTGCTTGGGTCTGGGCTGC
CCAGAAAGGGATCAGAAAGTGCCCAGAGGACCGAGAGGCAGGGACTCTGCTTTAGCATCCCAAC
GCCTGCTATTTCTTTTACACTCACCAGGGTCTTCTAATAAATCATAGCTTAGGGAAATACTTTC
CTAGGTAAGTCTAACAGTAAGAAAGAAGCCTATTGCTGACCCAGAGTTATGAGCCATATTTGAC
CATCCCAGTCCTTTGATAAATCCCAAATGTGCTACATCGATCTTGGTTGTGAACTTGCTTTGGG
GTAAATGCCAGAGTGTTATACACCGTGCTTCTGGTGTCACTCAATTCCTTCACTTTTAATTATG
GATACTTTGAAACAAGTCTCCTCATCTTCTCTGCAGACTCCACCATTTCTTTCCAAGAGCATGG
AGCTTAGCCTTCATCGTGTCCTACAGTTAGAAAGTGTCCCTCCCCTTGACAAATTTGACATAGC
CATCTCCTTTCTTTAATTACGGCCAAAGCCTCCATTACAACAGTCTTTATGTTGCCTTATTGCT
ACTTTTTCTTGTTGCTTCAGTCACTGCGTACTTCCAGTGCAGTCTCACCCACTTCTTTAAGATA
GTTTCTTGGTCCATTTATTTATTTATTTTTATGAAAGCAAAAGACTGGAGCATGGGAAAGCTGT
GTGCTCAAACTTGACTATTTCCATGAAGTTCCTCAGAGCACTGCAATTCAAGATTCTATTTTAT
TTTGGAGATATGCCCTTCGGCTTTGAGCTTCAAGAGATTCCAGCTTTATAAAGCACACCCCTCG
TGTTCCTTAGAAACGGGGCTCCAGAGGCCCGGGCTTCTTCAAGACAGCTGGTGTACACCCGCAT
CAAGCAGGCATTAGGTTAAAGCTCTGGCTCAGCGCGTTACTGTACTCCAGGTTGTACCGAAGAT
GGCCTGTGAGCTCACACTCGTGCTGTCTCCGGCCTAAACTCTGTTTTGGCTGATTACTATTTCA
GTGCTCATTTAAATGGATTAAATGTCTGGAATGCTAGAAATATAAGAAATGGAACTATATGTAA
TTGTTATTTTTTAATCTCAAAATAAATATACAAGCCCTTCA

hide sequence

RefSeq Acc Id:

XM_005387979 ⟹ XP_005388036

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955432	5,541,311 - 5,559,781 (-)	NCBI

Sequence:

show sequence

TTACTGATTGCCAAGGATCCAGAGGGTAATGTGCTTCAACCCCTGTTAAAAGTTTAGACTTCCT
GATTCTCCCATTTGGCCTCACACAAAGACCTGTTCCTCTGCAACCACCTCAAGATGCAGTACGG
AGGTGCGCCCGGAGGCCCGGCCTTTCCCGCGCAGACGCAGGACCCACTGTATGGCTACTTCGCT
GCGGTGGCCGGACAGGATGGGCAAATTGATGCTGATGAATTACAGAGATGTCTCACGCAGTCGG
GCATTGCTGGAGGATACAAACCTTTTAACCTGGAGACTTGTCGGCTTATGGTTTCAATGCTGGA
TAGAGATATGTCCGGCACAATGGGGTTCACCGAGTTTAAGGAACTCTGGGCGGTGCTGAATGGC
TGGAGGCAGCACTTCATCAGCTTCGACAGTGACCGCAGCGGCACGGTGGACCCGCATGAGCTGC
AGAAGGCGCTGACCACGATGGGATTTAGGTTAAATCCTCAAACTGTGAATTCGATCGCAAAACG
GTACAGCACCAACGGGAAGATCACCTTCGACGACTACATCGCCTGCTGCGTGAGGCTGAGGGCG
TTCACAGATAACTTTCGAAGACGGGATTCTGCTCAGCAAGGTGTTGTGAATTTCTCATATGACG
ATTTCATTCAGTGTGTCATGACTGTCTAAGTCAAGAGGAAGCTGTCGAACATAACATTCCAGCT
GCAGTGCATGTGTGCTTCCTCTTTGCCTTTAGTAACCTGCGTGGACTTCCGTCGTCGTCGCTGC
TTTCCCCAACAGCCGTTGCAAGGTTTATTACTCCACACAATTGAAGTTTTTAGTTTTGATAAGG
AATTCTTTGGAATTTTGATAATATAAAGTCAAATCTGCTATACCAATTAGAAGTTCCCTAACTC
ATTATCAACCATGCCTTATTTTCCTGCTAACCCTCTTTATATGAGTATGGAGAATGTTCAAGGT
GCATTATATGCTTTTCATTATGATGGGAAAAATTTTTAATTAAACTACAGCTGTGTACCTTTCC
TCCCCGAGAGGAATATGGTTGAAAATGTGTGGTGCATTCTTATGTAAATGATGTAGATCCTCTT
GGATGCAGAAAACAAACCAATATGGTCATCTATGTCAAGGTTTTATTTAAACTTACACATATTT
TGATGACCTTATCAGTGAACCGGGAACACTTCAGTGATTATCTTCTGCCTCCTTAATTTGAATG
GCAAATACTGTCACCAAGTTCTTTGTCATCACGCATTCAAACCTTTAATATACTTAAAAATCCT
AGAAAGCTTAGCTGTAGAAAAAATGGATAGAAAAAGACTAAGGGAATATATTAAAATATTAACT
ATGGTTGTTTTTGACTATACGATTCCAAGTGACTAGTTTCATTTACACATTTCACCATTTTCCA
GATTTTCTATATGGACTCTTCCATTCTCAAATCAGAAGATACACTAATTTTTAAAGTACTGATA
CATCCATTTGGATATGTGACATATTTATACTTTTAATAATATACGGCAAAAAGACTGGAATAGG
TGTCCCAAAATGTTCGTCTAGCAACCACTGGGAGACAGAGTAATGGGTTTATTTCCTTTTTTCC
TAACAGTTTTCCAAATACTCTAATAAGCAAGTATTATATATAATAGAAGACATTTTTTAAAAAT
TATTTCAGTAAGGTCTAGATTCCAGTGCTGTCTGTGCCTCTCATTTGTGGCTGGGTCATTTTTG
ATAACTCCAGGAGTCTGTTTCCCTGATTTCGACAAGGACATAGGACTTACCTCTTGGGGTACCT
TGAGATTTGAAAAAGTGTGTGGTACAACTAGCATCAACAGCATTGCGTTTCTTAAATTTAAAAT
TGGCCTGGTTTGCCTTTTCTCCCCCAAGAGTTTTACAGATAAAAAGTGGTCCTATTCTACTTCC
TCCTTGCCGGCAGTGTATTTGTCCTCTTTTAGGGCACAATGTGAGCATGTCCATTCAAGTGAAC
AATTCGTTGTCCACTAATGACAATAAAAGTTTTCTTTGAGCTTCTTTAGCCTCATTTTACTAAC
ACATTTTCAAATAGTGCATGCATATATGTATATAGAGAGAGAGAGTAAATCTTTACTGAACCCT
AATTTGTTTTCATGGCAAGTAGTTACGGCCAGATTAGAGGTCAGCGTGAAGCAGCCTGCTGTGT
CTTGCATGGTGCATCTAGGTTGCATCCAGGACCTAGTGTCTGTGCAGCCACAAAGCCTTGCTTG
GGTCTGGGCTGCCCAGAAAGGGATCAGAAAGTGCCCAGAGGACCGAGAGGCAGGGACTCTGCTT
TAGCATCCCAACGCCTGCTATTTCTTTTACACTCACCAGGGTCTTCTAATAAATCATAGCTTAG
GGAAATACTTTCCTAGGTAAGTCTAACAGTAAGAAAGAAGCCTATTGCTGACCCAGAGTTATGA
GCCATATTTGACCATCCCAGTCCTTTGATAAATCCCAAATGTGCTACATCGATCTTGGTTGTGA
ACTTGCTTTGGGGTAAATGCCAGAGTGTTATACACCGTGCTTCTGGTGTCACTCAATTCCTTCA
CTTTTAATTATGGATACTTTGAAACAAGTCTCCTCATCTTCTCTGCAGACTCCACCATTTCTTT
CCAAGAGCATGGAGCTTAGCCTTCATCGTGTCCTACAGTTAGAAAGTGTCCCTCCCCTTGACAA
ATTTGACATAGCCATCTCCTTTCTTTAATTACGGCCAAAGCCTCCATTACAACAGTCTTTATGT
TGCCTTATTGCTACTTTTTCTTGTTGCTTCAGTCACTGCGTACTTCCAGTGCAGTCTCACCCAC
TTCTTTAAGATAGTTTCTTGGTCCATTTATTTATTTATTTTTATGAAAGCAAAAGACTGGAGCA
TGGGAAAGCTGTGTGCTCAAACTTGACTATTTCCATGAAGTTCCTCAGAGCACTGCAATTCAAG
ATTCTATTTTATTTTGGAGATATGCCCTTCGGCTTTGAGCTTCAAGAGATTCCAGCTTTATAAA
GCACACCCCTCGTGTTCCTTAGAAACGGGGCTCCAGAGGCCCGGGCTTCTTCAAGACAGCTGGT
GTACACCCGCATCAAGCAGGCATTAGGTTAAAGCTCTGGCTCAGCGCGTTACTGTACTCCAGGT
TGTACCGAAGATGGCCTGTGAGCTCACACTCGTGCTGTCTCCGGCCTAAACTCTGTTTTGGCTG
ATTACTATTTCAGTGCTCATTTAAATGGATTAAATGTCTGGAATGCTAGAAATATAAGAAATGG
AACTATATGTAATTGTTATTTTTTAATCTCAAAATAAATATACAAGCCCTTCA

hide sequence

RefSeq Acc Id:

XM_013516016 ⟹ XP_013371470

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955432	5,541,311 - 5,556,641 (-)	NCBI

Sequence:

show sequence

GGCCGCGCTGGGTGCGGCGGGCGGCGGCGAGCAGTCGGCACCATGGCGTACCCTGGACATCCCG
GCGCGGGCGGCGGCTATTACCCAGGCGGGGATGGGCAAATTGATGCTGATGAATTACAGAGATG
TCTCACGCAGTCGGGCATTGCTGGAGGATACAAACCTTTTAACCTGGAGACTTGTCGGCTTATG
GTTTCAATGCTGGATAGAGATATGTCCGGCACAATGGGGTTCACCGAGTTTAAGGAACTCTGGG
CGGTGCTGAATGGCTGGAGGCAGCACTTCATCAGCTTCGACAGTGACCGCAGCGGCACGGTGGA
CCCGCATGAGCTGCAGAAGGCGCTGACCACGATGGGATTTAGGTTAAATCCTCAAACTGTGAAT
TCGATCGCAAAACGGTACAGCACCAACGGGAAGATCACCTTCGACGACTACATCGCCTGCTGCG
TGAGGCTGAGGGCGTTCACAGATAACTTTCGAAGACGGGATTCTGCTCAGCAAGGTGTTGTGAA
TTTCTCATATGACGATTTCATTCAGTGTGTCATGACTGTCTAAGTCAAGAGGAAGCTGTCGAAC
ATAACATTCCAGCTGCAGTGCATGTGTGCTTCCTCTTTGCCTTTAGTAACCTGCGTGGACTTCC
GTCGTCGTCGCTGCTTTCCCCAACAGCCGTTGCAAGGTTTATTACTCCACACAATTGAAGTTTT
TAGTTTTGATAAGGAATTCTTTGGAATTTTGATAATATAAAGTCAAATCTGCTATACCAATTAG
AAGTTCCCTAACTCATTATCAACCATGCCTTATTTTCCTGCTAACCCTCTTTATATGAGTATGG
AGAATGTTCAAGGTGCATTATATGCTTTTCATTATGATGGGAAAAATTTTTAATTAAACTACAG
CTGTGTACCTTTCCTCCCCGAGAGGAATATGGTTGAAAATGTGTGGTGCATTCTTATGTAAATG
ATGTAGATCCTCTTGGATGCAGAAAACAAACCAATATGGTCATCTATGTCAAGGTTTTATTTAA
ACTTACACATATTTTGATGACCTTATCAGTGAACCGGGAACACTTCAGTGATTATCTTCTGCCT
CCTTAATTTGAATGGCAAATACTGTCACCAAGTTCTTTGTCATCACGCATTCAAACCTTTAATA
TACTTAAAAATCCTAGAAAGCTTAGCTGTAGAAAAAATGGATAGAAAAAGACTAAGGGAATATA
TTAAAATATTAACTATGGTTGTTTTTGACTATACGATTCCAAGTGACTAGTTTCATTTACACAT
TTCACCATTTTCCAGATTTTCTATATGGACTCTTCCATTCTCAAATCAGAAGATACACTAATTT
TTAAAGTACTGATACATCCATTTGGATATGTGACATATTTATACTTTTAATAATATACGGCAAA
AAGACTGGAATAGGTGTCCCAAAATGTTCGTCTAGCAACCACTGGGAGACAGAGTAATGGGTTT
ATTTCCTTTTTTCCTAACAGTTTTCCAAATACTCTAATAAGCAAGTATTATATATAATAGAAGA
CATTTTTTAAAAATTATTTCAGTAAGGTCTAGATTCCAGTGCTGTCTGTGCCTCTCATTTGTGG
CTGGGTCATTTTTGATAACTCCAGGAGTCTGTTTCCCTGATTTCGACAAGGACATAGGACTTAC
CTCTTGGGGTACCTTGAGATTTGAAAAAGTGTGTGGTACAACTAGCATCAACAGCATTGCGTTT
CTTAAATTTAAAATTGGCCTGGTTTGCCTTTTCTCCCCCAAGAGTTTTACAGATAAAAAGTGGT
CCTATTCTACTTCCTCCTTGCCGGCAGTGTATTTGTCCTCTTTTAGGGCACAATGTGAGCATGT
CCATTCAAGTGAACAATTCGTTGTCCACTAATGACAATAAAAGTTTTCTTTGAGCTTCTTTAGC
CTCATTTTACTAACACATTTTCAAATAGTGCATGCATATATGTATATAGAGAGAGAGAGTAAAT
CTTTACTGAACCCTAATTTGTTTTCATGGCAAGTAGTTACGGCCAGATTAGAGGTCAGCGTGAA
GCAGCCTGCTGTGTCTTGCATGGTGCATCTAGGTTGCATCCAGGACCTAGTGTCTGTGCAGCCA
CAAAGCCTTGCTTGGGTCTGGGCTGCCCAGAAAGGGATCAGAAAGTGCCCAGAGGACCGAGAGG
CAGGGACTCTGCTTTAGCATCCCAACGCCTGCTATTTCTTTTACACTCACCAGGGTCTTCTAAT
AAATCATAGCTTAGGGAAATACTTTCCTAGGTAAGTCTAACAGTAAGAAAGAAGCCTATTGCTG
ACCCAGAGTTATGAGCCATATTTGACCATCCCAGTCCTTTGATAAATCCCAAATGTGCTACATC
GATCTTGGTTGTGAACTTGCTTTGGGGTAAATGCCAGAGTGTTATACACCGTGCTTCTGGTGTC
ACTCAATTCCTTCACTTTTAATTATGGATACTTTGAAACAAGTCTCCTCATCTTCTCTGCAGAC
TCCACCATTTCTTTCCAAGAGCATGGAGCTTAGCCTTCATCGTGTCCTACAGTTAGAAAGTGTC
CCTCCCCTTGACAAATTTGACATAGCCATCTCCTTTCTTTAATTACGGCCAAAGCCTCCATTAC
AACAGTCTTTATGTTGCCTTATTGCTACTTTTTCTTGTTGCTTCAGTCACTGCGTACTTCCAGT
GCAGTCTCACCCACTTCTTTAAGATAGTTTCTTGGTCCATTTATTTATTTATTTTTATGAAAGC
AAAAGACTGGAGCATGGGAAAGCTGTGTGCTCAAACTTGACTATTTCCATGAAGTTCCTCAGAG
CACTGCAATTCAAGATTCTATTTTATTTTGGAGATATGCCCTTCGGCTTTGAGCTTCAAGAGAT
TCCAGCTTTATAAAGCACACCCCTCGTGTTCCTTAGAAACGGGGCTCCAGAGGCCCGGGCTTCT
TCAAGACAGCTGGTGTACACCCGCATCAAGCAGGCATTAGGTTAAAGCTCTGGCTCAGCGCGTT
ACTGTACTCCAGGTTGTACCGAAGATGGCCTGTGAGCTCACACTCGTGCTGTCTCCGGCCTAAA
CTCTGTTTTGGCTGATTACTATTTCAGTGCTCATTTAAATGGATTAAATGTCTGGAATGCTAGA
AATATAAGAAATGGAACTATATGTAATTGTTATTTTTTAATCTCAAAATAAATATACAAGCCCT
TCA

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Protein Sequences


Protein RefSeqs	XP_005388035	(Get FASTA)	NCBI Sequence Viewer
	XP_005388036	(Get FASTA)	NCBI Sequence Viewer
	XP_013371470	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000006553
	ENSCLAP00000006553.1
	ENSCLAP00000006554
	ENSCLAP00000006554.1

RefSeq Acc Id:	XP_005388035 ⟸ XM_005387978
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2V287 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAYPGHPGAGGGYYPGGYGGAPGGPAFPAQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIA GGYKPFNLETCRLMVSMLDRDMSGTMGFTEFKELWAVLNGWRQHFISFDSDRSGTVDPHELQKA LTTMGFRLNPQTVNSIAKRYSTNGKITFDDYIACCVRLRAFTDNFRRRDSAQQGVVNFSYDDFI QCVMTV hide sequence

RefSeq Acc Id:	XP_005388036 ⟸ XM_005387979
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2UWQ8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQYGGAPGGPAFPAQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMV SMLDRDMSGTMGFTEFKELWAVLNGWRQHFISFDSDRSGTVDPHELQKALTTMGFRLNPQTVNS IAKRYSTNGKITFDDYIACCVRLRAFTDNFRRRDSAQQGVVNFSYDDFIQCVMTV hide sequence

RefSeq Acc Id:	XP_013371470 ⟸ XM_013516016
- Peptide Label:	isoform X3
- Sequence:	show sequence MAYPGHPGAGGGYYPGGDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGF TEFKELWAVLNGWRQHFISFDSDRSGTVDPHELQKALTTMGFRLNPQTVNSIAKRYSTNGKITF DDYIACCVRLRAFTDNFRRRDSAQQGVVNFSYDDFIQCVMTV hide sequence

RefSeq Acc Id:

ENSCLAP00000006554 ⟸ ENSCLAT00000006662

RefSeq Acc Id:

ENSCLAP00000006553 ⟸ ENSCLAT00000006661

Protein Domains

EF-hand

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000004619	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000006661	ENTREZGENE
	ENSCLAT00000006661.1	UniProtKB/TrEMBL
	ENSCLAT00000006662	ENTREZGENE
	ENSCLAT00000006662.1	UniProtKB/TrEMBL
Gene3D-CATH	6.10.140.900	UniProtKB/TrEMBL
	EF-hand	UniProtKB/TrEMBL
InterPro	EF-hand-dom_pair	UniProtKB/TrEMBL
	EF_Hand_1_Ca_BS	UniProtKB/TrEMBL
	EF_hand_dom	UniProtKB/TrEMBL
NCBI Gene	Sri	ENTREZGENE
PANTHER	CALPAIN, SMALL SUBUNIT 1 A-RELATED	UniProtKB/TrEMBL
	SORCIN	UniProtKB/TrEMBL
Pfam	EF-hand_7	UniProtKB/TrEMBL
	EF-hand_8	UniProtKB/TrEMBL
PROSITE	EF_HAND_1	UniProtKB/TrEMBL
	EF_HAND_2	UniProtKB/TrEMBL
SMART	EFh	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47473	UniProtKB/TrEMBL
UniProt	A0A8C2UWQ8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2V287	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD