Abhd6 (abhydrolase domain containing 6, acylglycerol lipase) - Rat Genome Database

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Gene: Abhd6 (abhydrolase domain containing 6, acylglycerol lipase) Chinchilla lanigera
Analyze
Symbol: Abhd6
Name: abhydrolase domain containing 6, acylglycerol lipase (Ensembl:abhydrolase domain containing 6)
RGD ID: 8973961
Description: ENCODES a protein that exhibits acylglycerol lipase activity (ortholog); phospholipase activity (ortholog); INVOLVED IN acylglycerol catabolic process (ortholog); long-term synaptic depression (ortholog); lysobisphosphatidic acid metabolic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); Pyruvate Dehydrogenase E1-Beta Deficiency (ortholog); FOUND IN AMPA glutamate receptor complex (ortholog); GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: abhydrolase domain containing 6; monoacylglycerol lipase ABHD6
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554301,808,924 - 1,861,441 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554301,809,969 - 1,861,441 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Abhd6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554301,808,924 - 1,861,441 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554301,809,969 - 1,861,441 (-)NCBIChiLan1.0ChiLan1.0
ABHD6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38358,237,792 - 58,294,734 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl358,237,532 - 58,295,693 (+)EnsemblGRCh38hg38GRCh38
GRCh37358,223,519 - 58,280,461 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36358,198,349 - 58,255,501 (+)NCBINCBI36Build 36hg18NCBI36
Build 34358,198,348 - 58,255,499NCBI
Celera358,237,772 - 58,295,009 (+)NCBICelera
Cytogenetic Map3p14.3NCBI
HuRef358,320,101 - 58,376,917 (+)NCBIHuRef
CHM1_1358,173,601 - 58,230,753 (+)NCBICHM1_1
T2T-CHM13v2.0358,278,191 - 58,335,141 (+)NCBIT2T-CHM13v2.0
Abhd6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391414,413,000 - 14,466,885 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1414,413,010 - 14,466,871 (-)EnsemblGRCm39 Ensembl
GRCm38148,002,888 - 8,056,773 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl148,002,902 - 8,056,763 (+)EnsemblGRCm38mm10GRCm38
MGSCv37148,835,416 - 8,889,069 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36146,794,781 - 6,848,434 (+)NCBIMGSCv36mm8
Celera143,626,234 - 3,679,797 (+)NCBICelera
Cytogenetic Map14A1NCBI
cM Map144.69NCBI
Abhd6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81519,289,967 - 19,337,500 (-)NCBIGRCr8
mRatBN7.21516,859,740 - 16,907,094 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1516,859,738 - 16,906,985 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1519,034,098 - 19,081,627 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01519,992,574 - 20,040,102 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01518,247,481 - 18,295,013 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01518,647,903 - 18,695,133 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1518,647,844 - 18,695,133 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01522,614,361 - 22,661,344 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41518,846,512 - 18,894,003 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11518,846,513 - 18,894,003 (-)NCBI
Celera1516,815,723 - 16,863,221 (-)NCBICelera
Cytogenetic Map15p14NCBI
ABHD6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2258,207,823 - 58,262,962 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1358,212,597 - 58,267,740 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0358,172,334 - 58,227,531 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1359,586,537 - 59,641,824 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl359,586,573 - 59,641,824 (+)Ensemblpanpan1.1panPan2
ABHD6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12032,301,120 - 32,331,030 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2032,302,104 - 32,330,998 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2032,230,178 - 32,271,085 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02032,573,573 - 32,614,688 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2032,573,597 - 32,614,474 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12032,029,624 - 32,070,713 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02032,386,128 - 32,427,061 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02032,557,760 - 32,599,072 (-)NCBIUU_Cfam_GSD_1.0
Abhd6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118169,549,211 - 169,593,878 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364732,687,746 - 2,732,473 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364732,687,784 - 2,732,413 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABHD6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1340,009,737 - 40,060,394 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11339,982,536 - 40,055,467 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21343,989,292 - 44,015,528 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ABHD6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12219,530,543 - 19,593,083 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2219,542,161 - 19,582,310 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041147,247,753 - 147,302,666 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Abhd6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248225,336,427 - 5,376,721 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248225,332,197 - 5,376,372 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000010944   ⟹   ENSCLAP00000010811
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554301,808,924 - 1,861,441 (-)Ensembl
RefSeq Acc Id: XM_005387302   ⟹   XP_005387359
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554301,809,969 - 1,861,441 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005387359 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000010811
  ENSCLAP00000010811.1
RefSeq Acc Id: XP_005387359   ⟸   XM_005387302
- UniProtKB: A0A8C2V6B7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000010811   ⟸   ENSCLAT00000010944
Protein Domains
AB hydrolase-1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007460 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000010944 ENTREZGENE
  ENSCLAT00000010944.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1820 UniProtKB/TrEMBL
InterPro AB_hydrolase UniProtKB/TrEMBL
  AB_hydrolase_1 UniProtKB/TrEMBL
  Epox_hydrolase-like UniProtKB/TrEMBL
NCBI Gene Abhd6 ENTREZGENE
PANTHER MONOACYLGLYCEROL LIPASE UniProtKB/TrEMBL
  MONOACYLGLYCEROL LIPASE ABHD6 UniProtKB/TrEMBL
Pfam Abhydrolase_1 UniProtKB/TrEMBL
PRINTS ABHYDROLASE UniProtKB/TrEMBL
  EPOXHYDRLASE UniProtKB/TrEMBL
Superfamily-SCOP SSF53474 UniProtKB/TrEMBL
UniProt A0A8C2V6B7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-01-28 Abhd6  abhydrolase domain containing 6, acylglycerol lipase  Abhd6  abhydrolase domain containing 6  Symbol and/or name change 5135510 APPROVED