Topaz1 (testis and ovary specific TOPAZ 1) - Rat Genome Database

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Gene: Topaz1 (testis and ovary specific TOPAZ 1) Chinchilla lanigera
Analyze
Symbol: Topaz1
Name: testis and ovary specific TOPAZ 1 (Ensembl:testis and ovary specific PAZ domain containing 1)
RGD ID: 8973043
Description: INVOLVED IN apoptotic process (ortholog); ectopic germ cell programmed cell death (ortholog); obsolete ncRNA transcription (ortholog); ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: testis and ovary specific PAZ domain containing 1; testis- and ovary-specific PAZ domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542027,048,713 - 27,107,006 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542027,048,650 - 27,106,983 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Topaz1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542027,048,713 - 27,107,006 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542027,048,650 - 27,106,983 (-)NCBIChiLan1.0ChiLan1.0
TOPAZ1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38344,241,886 - 44,336,689 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl344,241,886 - 44,332,098 (+)EnsemblGRCh38hg38GRCh38
GRCh37344,283,378 - 44,373,590 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36344,258,382 - 44,348,594 (+)NCBINCBI36Build 36hg18NCBI36
Celera344,221,424 - 44,311,638 (+)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef344,326,973 - 44,417,182 (+)NCBIHuRef
CHM1_1344,233,507 - 44,323,686 (+)NCBICHM1_1
T2T-CHM13v2.0344,257,474 - 44,352,542 (+)NCBIT2T-CHM13v2.0
Topaz1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399122,576,264 - 122,631,200 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9122,576,411 - 122,631,200 (+)EnsemblGRCm39 Ensembl
GRCm389122,747,199 - 122,802,135 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9122,747,346 - 122,802,135 (+)EnsemblGRCm38mm10GRCm38
MGSCv379122,656,464 - 122,711,253 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369122,680,835 - 122,711,253 (+)NCBIMGSCv36mm8
Celera9123,196,291 - 123,251,031 (+)NCBICelera
Cytogenetic Map9F4NCBI
cM Map973.1NCBI
Topaz1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88131,235,714 - 131,290,359 (+)NCBIGRCr8
mRatBN7.28122,358,243 - 122,412,875 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8122,358,243 - 122,412,875 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8127,952,043 - 128,007,121 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08126,150,983 - 126,206,061 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08123,977,202 - 124,031,791 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08131,788,816 - 131,843,668 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8131,789,575 - 131,843,713 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08130,944,799 - 130,998,710 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48127,448,509 - 127,502,514 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera8121,473,442 - 121,530,654 (+)NCBICelera
Cytogenetic Map8q32NCBI
TOPAZ1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2244,188,877 - 44,279,430 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1344,193,643 - 44,284,197 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0344,131,729 - 44,221,846 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1345,190,901 - 45,280,601 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl345,190,960 - 45,280,601 (+)Ensemblpanpan1.1panPan2
TOPAZ1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1232,009,526 - 2,086,669 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl232,009,613 - 2,086,697 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha232,044,773 - 2,122,720 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0232,256,165 - 2,334,127 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1232,096,692 - 2,174,636 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0232,221,131 - 2,299,082 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0232,189,445 - 2,267,387 (-)NCBIUU_Cfam_GSD_1.0
Topaz1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118198,785,413 - 198,853,817 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366951,137,867 - 1,206,152 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366951,137,867 - 1,206,152 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TOPAZ1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1327,574,767 - 27,643,980 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11327,574,718 - 27,644,009 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TOPAZ1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1225,665,735 - 5,757,697 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl225,666,215 - 5,757,697 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041161,424,967 - 161,523,855 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Topaz1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473076,010,503 - 76,068,979 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473076,011,384 - 76,083,927 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000023296   ⟹   ENSCLAP00000023078
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542027,048,713 - 27,107,006 (-)Ensembl
RefSeq Acc Id: XM_013513516   ⟹   XP_013368970
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542027,048,650 - 27,106,983 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013513517   ⟹   XP_013368971
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542027,048,650 - 27,106,983 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013513518   ⟹   XP_013368972
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542027,048,650 - 27,106,983 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013368970 (Get FASTA)   NCBI Sequence Viewer  
  XP_013368971 (Get FASTA)   NCBI Sequence Viewer  
  XP_013368972 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000023078
  ENSCLAP00000023078.1
Reference Protein Sequences
RefSeq Acc Id: XP_013368972   ⟸   XM_013513518
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013368971   ⟸   XM_013513517
- Peptide Label: isoform X2
- UniProtKB: A0A8C2W4R3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013368970   ⟸   XM_013513516
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000023078   ⟸   ENSCLAT00000023296
Protein Domains
Protein TOPAZ1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000015843 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000023296 ENTREZGENE
  ENSCLAT00000023296.1 UniProtKB/TrEMBL
InterPro TOPAZ1 UniProtKB/TrEMBL
  TOPAZ1_dom UniProtKB/TrEMBL
NCBI Gene Topaz1 ENTREZGENE
PANTHER PROTEIN TOPAZ1 UniProtKB/TrEMBL
  PTHR35671 UniProtKB/TrEMBL
Pfam Asp_Glu_race_2 UniProtKB/TrEMBL
UniProt A0A8C2W4R3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-07-06 Topaz1  testis and ovary specific TOPAZ 1  Topaz1  testis and ovary specific PAZ domain containing 1  Symbol and/or name change 5135510 APPROVED