Wnt10b (Wnt family member 10B) - Rat Genome Database

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Gene: Wnt10b (Wnt family member 10B) Chinchilla lanigera
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Symbol: Wnt10b
Name: Wnt family member 10B
RGD ID: 8971678
Description: INVOLVED IN bone trabecula formation (ortholog); canonical Wnt signaling pathway (ortholog); cellular response to cAMP (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); Neoplasm Recurrence, Local (ortholog); obesity (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: wingless-type MMTV integration site family, member 10B
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555007,782,782 - 7,788,309 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555007,782,782 - 7,800,281 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
bone trabecula formation  (ISO)
canonical Wnt signaling pathway  (ISO)
cellular response to cAMP  (ISO)
cellular response to hydrostatic pressure  (ISO)
cellular response to organic cyclic compound  (ISO)
cellular response to organic substance  (ISO)
cellular response to parathyroid hormone stimulus  (ISO)
chondrocyte differentiation  (ISO)
fungiform papilla development  (ISO)
G2/M transition of mitotic cell cycle  (ISO)
hematopoietic stem cell proliferation  (ISO)
lipid metabolic process  (ISO)
myoblast differentiation involved in skeletal muscle regeneration  (ISO)
negative regulation of cold-induced thermogenesis  (ISO)
negative regulation of epithelial cell proliferation  (ISO)
negative regulation of fat cell differentiation  (ISO)
negative regulation of transcription by RNA polymerase II  (ISO)
positive regulation of apoptotic process  (ISO)
positive regulation of bone mineralization  (ISO)
positive regulation of canonical Wnt signaling pathway  (ISO)
positive regulation of cell population proliferation  (ISO)
positive regulation of DNA-binding transcription factor activity  (ISO)
positive regulation of epithelial cell differentiation  (ISO)
positive regulation of G2/M transition of mitotic cell cycle  (ISO)
positive regulation of ossification  (ISO)
positive regulation of osteoblast differentiation  (ISO)
positive regulation of RNA polymerase II transcription preinitiation complex assembly  (ISO)
positive regulation of timing of anagen  (ISO)
positive regulation of transcription by RNA polymerase II  (ISO)
protein stabilization  (ISO)
regulation of cell cycle  (ISO)
regulation of fat cell differentiation  (ISO)
regulation of proteasomal ubiquitin-dependent protein catabolic process  (ISO)
regulation of protein metabolic process  (ISO)
regulation of skeletal muscle tissue development  (ISO)
regulation of transcription by RNA polymerase II  (ISO)
sensory perception of taste  (ISO)
skeletal muscle fiber development  (ISO)
skeletal muscle tissue regeneration  (ISO)
smoothened signaling pathway  (ISO)
Wnt signaling pathway  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Wnt10b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555007,782,782 - 7,788,309 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555007,782,782 - 7,800,281 (-)NCBIChiLan1.0ChiLan1.0
WNT10B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1248,965,340 - 48,971,735 (-)EnsemblGRCh38hg38GRCh38
GRCh381248,965,340 - 48,979,587 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371249,359,123 - 49,365,518 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361247,645,390 - 47,651,810 (-)NCBINCBI36hg18NCBI36
Build 341247,645,390 - 47,651,810NCBI
Celera1248,153,932 - 48,160,449 (-)NCBI
Cytogenetic Map12q13.12NCBI
HuRef1246,390,715 - 46,397,232 (-)NCBIHuRef
CHM1_11249,324,923 - 49,331,441 (-)NCBICHM1_1
Wnt10b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391598,668,593 - 98,676,093 (-)NCBIGRCm39mm39
GRCm39 Ensembl1598,668,593 - 98,676,031 (-)Ensembl
GRCm381598,770,712 - 98,778,206 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1598,770,712 - 98,778,150 (-)EnsemblGRCm38mm10GRCm38
MGSCv371598,602,183 - 98,608,581 (-)NCBIGRCm37mm9NCBIm37
MGSCv361598,599,796 - 98,606,184 (-)NCBImm8
Celera15100,921,391 - 100,927,785 (-)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1554.65NCBI
Wnt10b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27129,922,088 - 129,927,892 (-)NCBImRatBN7.2
Rnor_6.0 Ensembl7140,448,465 - 140,454,268 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.07140,448,284 - 140,466,159 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X114,958,456 - 114,976,226 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47137,541,197 - 137,547,000 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17137,617,649 - 137,623,456 (-)NCBI
Celera7126,411,054 - 126,416,855 (-)NCBICelera
Cytogenetic Map7q36NCBI
WNT10B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11240,659,106 - 40,665,734 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1240,659,106 - 40,665,734 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01239,771,163 - 39,785,411 (+)NCBIMhudiblu_PPA_v0panPan3
WNT10B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1275,599,905 - 5,605,506 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl275,601,089 - 5,605,501 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2740,652,204 - 40,660,691 (-)NCBI
ROS_Cfam_1.0275,648,026 - 5,656,510 (+)NCBI
UMICH_Zoey_3.1275,611,949 - 5,620,434 (+)NCBI
UNSW_CanFamBas_1.0275,602,160 - 5,610,644 (+)NCBI
UU_Cfam_GSD_1.02741,044,507 - 41,052,994 (-)NCBI
Wnt10b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494566,386,524 - 66,396,592 (+)NCBI
SpeTri2.0NW_0049365126,768,240 - 6,774,172 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WNT10B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl514,997,381 - 15,013,919 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1514,997,377 - 15,013,928 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2515,407,596 - 15,422,005 (-)NCBISscrofa10.2Sscrofa10.2susScr3
WNT10B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11145,205,728 - 45,229,050 (-)NCBI
ChlSab1.1 Ensembl1145,205,566 - 45,210,893 (-)Ensembl
Vero_WHO_p1.0NW_023666037200,931,714 - 200,938,206 (+)NCBI
Wnt10b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248163,221,573 - 3,227,102 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000004033   ⟹   ENSCLAP00000003954
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555007,782,782 - 7,788,309 (-)Ensembl
RefSeq Acc Id: XM_005406675   ⟹   XP_005406732
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555007,782,782 - 7,788,199 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005406676   ⟹   XP_005406733
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555007,782,782 - 7,788,294 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005406677   ⟹   XP_005406734
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555007,782,782 - 7,800,281 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005406678   ⟹   XP_005406735
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555007,782,782 - 7,800,281 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005406679   ⟹   XP_005406736
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555007,782,782 - 7,788,281 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505648   ⟹   XP_013361102
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555007,782,782 - 7,787,565 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005406735   ⟸   XM_005406678
- Sequence:
RefSeq Acc Id: XP_005406734   ⟸   XM_005406677
- Sequence:
RefSeq Acc Id: XP_005406736   ⟸   XM_005406679
- Sequence:
RefSeq Acc Id: XP_005406733   ⟸   XM_005406676
- Sequence:
RefSeq Acc Id: XP_005406732   ⟸   XM_005406675
- Sequence:
RefSeq Acc Id: XP_013361102   ⟸   XM_013505648
- Sequence:
RefSeq Acc Id: ENSCLAP00000003954   ⟸   ENSCLAT00000004033


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002817 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000003954 ENTREZGENE
Ensembl Transcript ENSCLAT00000004033 ENTREZGENE
NCBI Gene Wnt10b ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Wnt10b  Wnt family member 10B    wingless-type MMTV integration site family, member 10B  Symbol and/or name change 5135510 APPROVED