Chrnb3 (cholinergic receptor nicotinic beta 3 subunit) - Rat Genome Database

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Gene: Chrnb3 (cholinergic receptor nicotinic beta 3 subunit) Chinchilla lanigera
Analyze
Symbol: Chrnb3
Name: cholinergic receptor nicotinic beta 3 subunit
RGD ID: 8971193
Description: ENCODES a protein that exhibits acetylcholine binding (ortholog); heterocyclic compound binding (ortholog); INVOLVED IN presynaptic modulation of chemical synaptic transmission (ortholog); PARTICIPATES IN acetylcholine signaling pathway via nicotinic acetylcholine receptor; ASSOCIATED WITH depressive disorder (ortholog); genetic disease (ortholog); Idiopathic Basal Ganglia Calcification 1 (ortholog); FOUND IN acetylcholine-gated channel complex (ortholog); dopaminergic synapse (ortholog); presynapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cholinergic receptor, nicotinic, beta 3 (neuronal); neuronal acetylcholine receptor subunit beta-3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955536190,949 - 232,424 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955536189,881 - 229,835 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Chrnb3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955536190,949 - 232,424 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955536189,881 - 229,835 (-)NCBIChiLan1.0ChiLan1.0
CHRNB3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38842,697,366 - 42,737,407 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl842,697,366 - 42,737,407 (+)EnsemblGRCh38hg38GRCh38
GRCh37842,552,509 - 42,592,550 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36842,671,719 - 42,711,366 (+)NCBINCBI36Build 36hg18NCBI36
Build 34842,671,718 - 42,711,366NCBI
Celera841,499,567 - 41,540,205 (+)NCBICelera
Cytogenetic Map8p11.21NCBI
HuRef841,074,730 - 41,114,440 (+)NCBIHuRef
CHM1_1842,599,470 - 42,639,116 (+)NCBICHM1_1
T2T-CHM13v2.0842,965,410 - 43,005,503 (+)NCBIT2T-CHM13v2.0
Chrnb3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39827,858,688 - 27,889,758 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl827,858,739 - 27,889,758 (+)EnsemblGRCm39 Ensembl
GRCm38827,368,711 - 27,399,730 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl827,368,711 - 27,399,730 (+)EnsemblGRCm38mm10GRCm38
MGSCv37828,479,183 - 28,510,202 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36828,834,647 - 28,865,665 (+)NCBIMGSCv36mm8
Celera828,858,231 - 28,889,248 (+)NCBICelera
Cytogenetic Map8A2NCBI
cM Map816.0NCBI
Chrnb3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81671,411,847 - 71,454,225 (-)NCBIGRCr8
mRatBN7.21664,713,438 - 64,751,360 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1664,714,169 - 64,751,360 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1670,005,948 - 70,034,159 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01673,412,292 - 73,440,503 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01668,649,563 - 68,686,751 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01668,876,442 - 68,913,628 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1668,875,709 - 68,913,628 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01668,502,911 - 68,539,031 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41669,028,625 - 69,069,274 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11669,028,830 - 69,069,480 (-)NCBI
Celera1662,637,536 - 62,674,782 (-)NCBICelera
Cytogenetic Map16q12.3NCBI
CHRNB3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2761,155,811 - 61,195,012 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1836,871,869 - 36,911,058 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0841,947,062 - 41,987,159 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1839,390,959 - 39,430,267 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl839,391,001 - 39,429,926 (+)Ensemblpanpan1.1panPan2
CHRNB3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11623,021,652 - 23,040,907 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1623,021,645 - 23,048,347 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1623,524,646 - 23,545,471 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01624,771,003 - 24,791,610 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1624,772,988 - 24,791,545 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11623,139,564 - 23,160,813 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01623,704,601 - 23,725,844 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01623,755,352 - 23,776,571 (-)NCBIUU_Cfam_GSD_1.0
Chrnb3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494346,089,677 - 46,116,077 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493678546,796 - 72,640 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493678546,076 - 72,529 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHRNB3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1711,687,557 - 11,722,183 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11711,687,646 - 11,714,357 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21712,667,001 - 12,693,124 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CHRNB3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1840,695,061 - 40,730,127 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl840,706,666 - 40,728,963 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660521,043,203 - 1,065,050 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chrnb3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624780487,006 - 510,056 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624780481,836 - 510,192 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000002657   ⟹   ENSCLAP00000002603
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955536190,949 - 232,424 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000002658   ⟹   ENSCLAP00000002604
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955536190,949 - 212,319 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000002659   ⟹   ENSCLAP00000002605
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955536190,949 - 212,319 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000002660   ⟹   ENSCLAP00000002606
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955536193,506 - 212,319 (-)Ensembl
RefSeq Acc Id: XM_013507722   ⟹   XP_013363176
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955536189,881 - 229,835 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013363176 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000002603
  ENSCLAP00000002603.1
  ENSCLAP00000002604.1
  ENSCLAP00000002605.1
  ENSCLAP00000002606.1
RefSeq Acc Id: XP_013363176   ⟸   XM_013507722
- UniProtKB: A0A8C2UN01 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000002604   ⟸   ENSCLAT00000002658
RefSeq Acc Id: ENSCLAP00000002603   ⟸   ENSCLAT00000002657
RefSeq Acc Id: ENSCLAP00000002605   ⟸   ENSCLAT00000002659
RefSeq Acc Id: ENSCLAP00000002606   ⟸   ENSCLAT00000002660

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000001883 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000002657 ENTREZGENE
  ENSCLAT00000002657.1 UniProtKB/TrEMBL
  ENSCLAT00000002658.1 UniProtKB/TrEMBL
  ENSCLAT00000002659.1 UniProtKB/TrEMBL
  ENSCLAT00000002660.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.390 UniProtKB/TrEMBL
  2.70.170.10 UniProtKB/TrEMBL
InterPro Neur_chan_lig-bd UniProtKB/TrEMBL
  Neur_chan_lig-bd_sf UniProtKB/TrEMBL
  Neur_channel UniProtKB/TrEMBL
  Neuro-gated_channel_TM_sf UniProtKB/TrEMBL
  Neuro_actylchol_rec UniProtKB/TrEMBL
  Neurotrans-gated_channel_TM UniProtKB/TrEMBL
  Neurotransmitter_ion_chnl_CS UniProtKB/TrEMBL
  Nicotinic_acetylcholine_rcpt UniProtKB/TrEMBL
NCBI Gene Chrnb3 ENTREZGENE
PANTHER NEURONAL ACETYLCHOLINE RECEPTOR SUBUNIT BETA-3 UniProtKB/TrEMBL
  PTHR18945 UniProtKB/TrEMBL
Pfam Neur_chan_LBD UniProtKB/TrEMBL
  Neur_chan_memb UniProtKB/TrEMBL
PRINTS NICOTINICR UniProtKB/TrEMBL
  NRIONCHANNEL UniProtKB/TrEMBL
PROSITE NEUROTR_ION_CHANNEL UniProtKB/TrEMBL
Superfamily-SCOP SSF63712 UniProtKB/TrEMBL
  SSF90112 UniProtKB/TrEMBL
UniProt A0A8C2UM65_CHILA UniProtKB/TrEMBL
  A0A8C2UN01 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2UQ16_CHILA UniProtKB/TrEMBL
  A0A8C2USR7_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Chrnb3  cholinergic receptor nicotinic beta 3 subunit    cholinergic receptor, nicotinic, beta 3 (neuronal)  Symbol and/or name change 5135510 APPROVED