Fat3 (FAT atypical cadherin 3) - Rat Genome Database

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Gene: Fat3 (FAT atypical cadherin 3) Chinchilla lanigera
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Symbol: Fat3
Name: FAT atypical cadherin 3
RGD ID: 8970599
Description: INVOLVED IN cell morphogenesis involved in differentiation (ortholog); negative regulation of dendrite development (ortholog); neuron migration (ortholog); ASSOCIATED WITH esophagus squamous cell carcinoma (ortholog); Hirschsprung Disease 1 (ortholog); intellectual disability (ortholog); FOUND IN dendrite (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: protocadherin Fat 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554141,472,067 - 1,962,265 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554141,467,087 - 2,083,914 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
dendrite  (ISO)

References


Genomics

Comparative Map Data
Fat3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554141,472,067 - 1,962,265 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554141,467,087 - 2,083,914 (-)NCBIChiLan1.0ChiLan1.0
FAT3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1192,224,818 - 92,896,473 (+)EnsemblGRCh38hg38GRCh38
GRCh381192,224,636 - 92,896,473 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371191,957,984 - 92,629,639 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361191,724,910 - 92,269,284 (+)NCBINCBI36hg18NCBI36
Celera1189,389,818 - 89,934,254 (+)NCBI
Cytogenetic Map11q14.3NCBI
HuRef1188,175,033 - 88,720,594 (+)NCBIHuRef
CHM1_11191,968,261 - 92,512,715 (+)NCBICHM1_1
Fat3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39915,821,485 - 16,413,981 (-)NCBIGRCm39mm39
GRCm39 Ensembl915,821,485 - 16,412,581 (-)Ensembl
GRCm38915,910,189 - 16,502,681 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl915,910,189 - 16,501,285 (-)EnsemblGRCm38mm10GRCm38
MGSCv37915,714,637 - 16,182,675 (-)NCBIGRCm37mm9NCBIm37
MGSCv36915,660,586 - 16,128,624 (-)NCBImm8
Celera913,190,165 - 13,658,604 (-)NCBICelera
Cytogenetic Map9A2NCBI
Fat3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2812,691,470 - 13,274,336 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl812,694,019 - 13,273,135 (-)Ensembl
Rnor_6.0814,417,039 - 15,011,596 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl814,417,584 - 14,880,644 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0814,504,017 - 15,096,304 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4812,701,734 - 13,283,589 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1812,701,733 - 13,283,589 (-)NCBI
Celera814,159,097 - 14,735,217 (-)NCBICelera
Cytogenetic Map8q12NCBI
FAT3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11190,737,036 - 91,417,091 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01187,242,937 - 87,921,955 (+)NCBIMhudiblu_PPA_v0panPan3
FAT3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1217,711,304 - 8,355,609 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl217,711,995 - 8,213,266 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha217,726,049 - 8,305,922 (-)NCBI
ROS_Cfam_1.0217,887,082 - 8,530,931 (-)NCBI
UMICH_Zoey_3.1217,673,213 - 8,316,021 (-)NCBI
UNSW_CanFamBas_1.0217,741,688 - 8,385,411 (-)NCBI
UU_Cfam_GSD_1.0217,786,294 - 8,429,295 (-)NCBI
Fat3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494777,516,471 - 78,120,541 (+)NCBI
SpeTri2.0NW_0049366741,770,884 - 2,104,909 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAT3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1924,772,394 - 25,476,424 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2928,097,757 - 28,730,250 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAT3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1183,471,266 - 84,159,858 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl183,609,116 - 84,158,537 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604341,615,074 - 42,308,057 (-)NCBIVero_WHO_p1.0
Fat3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473536,951,642 - 37,627,652 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000020137   ⟹   ENSCLAP00000019944
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554141,472,067 - 1,962,265 (-)Ensembl
RefSeq Acc Id: XM_005379721   ⟹   XP_005379778
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554141,467,087 - 2,083,914 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013512035   ⟹   XP_013367489
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554141,473,928 - 2,083,914 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005379778 (Get FASTA)   NCBI Sequence Viewer  
  XP_013367489 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005379778   ⟸   XM_005379721
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013367489   ⟸   XM_013512035
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000019944   ⟸   ENSCLAT00000020137


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000013669 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000019944 ENTREZGENE
Ensembl Transcript ENSCLAT00000020137 ENTREZGENE
NCBI Gene Fat3 ENTREZGENE