Syt7 (synaptotagmin 7) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Syt7 (synaptotagmin 7) Chinchilla lanigera
Analyze
Symbol: Syt7
Name: synaptotagmin 7
RGD ID: 8970404
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent phospholipid binding (ortholog); calmodulin binding (ortholog); INVOLVED IN calcium ion regulated lysosome exocytosis (ortholog); calcium ion-regulated exocytosis of neurotransmitter (ortholog); calcium-dependent activation of synaptic vesicle fusion (ortholog); PARTICIPATES IN calcium/calcium-mediated signaling pathway; insulin secretion pathway; FOUND IN axon terminus (ortholog); dendrite (ortholog); dense core granule (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: synaptotagmin VII; synaptotagmin-7
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555116,051,386 - 6,093,651 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555116,051,392 - 6,093,651 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Syt7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555116,051,386 - 6,093,651 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555116,051,392 - 6,093,651 (+)NCBIChiLan1.0ChiLan1.0
SYT7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1161,515,313 - 61,581,148 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl1161,513,714 - 61,581,148 (-)EnsemblGRCh38hg38GRCh38
GRCh381161,513,714 - 61,588,404 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371161,281,186 - 61,348,548 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh371161,281,188 - 61,348,523 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361161,039,361 - 61,104,874 (-)NCBINCBI36hg18NCBI36
Build 341161,039,361 - 61,104,874NCBI
Celera1158,618,148 - 58,683,697 (-)NCBI
Cytogenetic Map11q12.2NCBI
HuRef1157,608,716 - 57,651,861 (-)NCBIHuRef
CHM1_11161,164,220 - 61,231,379 (-)NCBICHM1_1
Syt7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391910,366,142 - 10,430,545 (+)NCBIGRCm39mm39
GRCm381910,388,802 - 10,453,181 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1910,389,090 - 10,453,180 (+)EnsemblGRCm38mm10GRCm38
MGSCv371910,463,580 - 10,527,671 (+)NCBIGRCm37mm9NCBIm37
MGSCv361910,456,528 - 10,515,489 (+)NCBImm8
Celera1911,085,012 - 11,149,518 (+)NCBICelera
Cytogenetic Map19ANCBI
Syt7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21207,031,369 - 207,093,787 (+)NCBI
Rnor_6.0 Ensembl1226,435,979 - 226,493,377 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01226,435,816 - 226,498,008 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01233,382,523 - 233,445,604 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41212,876,675 - 212,935,373 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11213,035,183 - 213,093,803NCBI
Celera1204,526,212 - 204,583,576 (+)NCBICelera
Cytogenetic Map1q43NCBI
SYT7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11160,175,403 - 60,242,375 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1160,175,403 - 60,242,375 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01156,814,694 - 56,880,439 (-)NCBIMhudiblu_PPA_v0panPan3
SYT7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1854,861,754 - 54,921,367 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11854,863,072 - 54,926,121 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Syt7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365811,516,199 - 1,557,992 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYT7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl29,947,925 - 10,012,521 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.129,947,962 - 10,012,713 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.229,513,096 - 9,563,737 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SYT7
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1112,267,591 - 12,333,181 (+)NCBI
ChlSab1.1 Ensembl112,267,685 - 12,333,185 (+)Ensembl
Syt7
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624926722,201 - 765,834 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000014562   ⟹   ENSCLAP00000014404
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555116,051,386 - 6,091,267 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000014563   ⟹   ENSCLAP00000014405
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555116,051,392 - 6,093,651 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000014564   ⟹   ENSCLAP00000014406
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555116,051,392 - 6,093,651 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000014565   ⟹   ENSCLAP00000014407
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555116,065,940 - 6,091,267 (+)Ensembl
RefSeq Acc Id: XM_013506496   ⟹   XP_013361950
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555116,051,392 - 6,093,651 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506497   ⟹   XP_013361951
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555116,051,392 - 6,093,651 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506498   ⟹   XP_013361952
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555116,051,392 - 6,093,651 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506499   ⟹   XP_013361953
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555116,051,392 - 6,093,651 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506500   ⟹   XP_013361954
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555116,051,392 - 6,093,651 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506501   ⟹   XP_013361955
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555116,051,392 - 6,093,651 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506502   ⟹   XP_013361956
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555116,051,392 - 6,093,651 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506503   ⟹   XP_013361957
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555116,051,392 - 6,093,651 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_013361950   ⟸   XM_013506496
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013361951   ⟸   XM_013506497
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013361955   ⟸   XM_013506501
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_013361953   ⟸   XM_013506499
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013361954   ⟸   XM_013506500
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_013361956   ⟸   XM_013506502
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_013361952   ⟸   XM_013506498
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013361957   ⟸   XM_013506503
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: ENSCLAP00000014404   ⟸   ENSCLAT00000014562
RefSeq Acc Id: ENSCLAP00000014405   ⟸   ENSCLAT00000014563
RefSeq Acc Id: ENSCLAP00000014406   ⟸   ENSCLAT00000014564
RefSeq Acc Id: ENSCLAP00000014407   ⟸   ENSCLAT00000014565


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009934 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000014404 ENTREZGENE
  ENSCLAP00000014405 ENTREZGENE
  ENSCLAP00000014406 ENTREZGENE
  ENSCLAP00000014407 ENTREZGENE
Ensembl Transcript ENSCLAT00000014562 ENTREZGENE
  ENSCLAT00000014563 ENTREZGENE
  ENSCLAT00000014564 ENTREZGENE
  ENSCLAT00000014565 ENTREZGENE
NCBI Gene LOC102020828 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Syt7  synaptotagmin 7    synaptotagmin VII  Symbol and/or name change 5135510 APPROVED
2015-08-25 Syt7  synaptotagmin VII  LOC102020828  uncharacterized LOC102020828  Symbol and/or name change 5135510 APPROVED