| Gene: LOC102007039 (chromosome unknown open reading frame, human C4orf51) Chinchilla lanigera |
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Analyze |
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| Symbol: |
LOC102007039 (Ensembl: C4orf51) |
| Name: |
chromosome unknown open reading frame, human C4orf51 |
| RGD ID: |
8969991 |
| Description: |
ASSOCIATED WITH genetic disease (ortholog); methylmalonic acidemia cblA type (ortholog) |
| Type: |
protein-coding
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| RefSeq Status: |
MODEL |
| Previously known as: |
uncharacterized protein C4orf51 homolog |
| RGD Orthologs |
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| Alliance Genes |
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| More Info |
more info ...
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| More Info |
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| Latest Assembly: |
ChiLan1.0 - Chinchilla ChiLan1.0 Assembly |
| Position: |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChiLan1.0 Ensembl | NW_004955428 | 1,500,090 - 1,529,078 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955428 | 1,503,025 - 1,543,635 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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| JBrowse: |
View Region in Genome Browser (JBrowse)
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| Model |
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Imported Disease Annotations - ClinVar
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References
Genomics
Comparative Map Data
LOC102007039
(Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChiLan1.0 Ensembl | NW_004955428 | 1,500,090 - 1,529,078 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955428 | 1,503,025 - 1,543,635 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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C4orf51
(Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 4 | 145,680,146 - 145,792,443 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 4 | 145,680,146 - 145,771,032 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 4 | 146,601,298 - 146,653,949 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 4 | 146,820,806 - 146,873,399 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 4 | 143,928,891 - 143,981,824 (+) | NCBI | | Celera | | | Cytogenetic Map | 4 | q31.21 | NCBI | | | | | HuRef | 4 | 142,331,319 - 142,382,942 (+) | NCBI | | HuRef | | | CHM1_1 | 4 | 146,577,928 - 146,631,252 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 4 | 148,995,961 - 149,108,468 (+) | NCBI | | T2T-CHM13v2.0 | | |
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1700011L22Rik
(Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 8 | 79,937,059 - 79,975,212 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 8 | 79,937,060 - 79,975,199 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 8 | 79,210,430 - 79,248,663 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 8 | 79,210,431 - 79,248,570 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 8 | 81,734,329 - 81,772,482 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 8 | 82,106,502 - 82,144,642 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 8 | 83,487,532 - 83,525,636 (-) | NCBI | | Celera | | | Cytogenetic Map | 8 | C1 | NCBI | | | | | cM Map | 8 | 37.48 | NCBI | | | | |
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C19h4orf51
(Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCr8 | 19 | 45,573,267 - 45,608,796 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 19 | 28,669,044 - 28,704,512 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 19 | 28,669,059 - 28,704,508 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 19 | 35,523,847 - 35,559,276 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 19 | 36,177,925 - 36,213,366 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 19 | 38,413,579 - 38,449,166 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 19 | 32,344,078 - 32,380,029 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 19 | 32,344,078 - 32,380,025 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 19 | 43,240,203 - 43,275,432 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 19 | 30,505,305 - 30,540,608 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 19 | 28,177,863 - 28,212,691 (+) | NCBI | | Celera | | | Cytogenetic Map | 19 | q11 | NCBI | | | | |
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C3H4orf51
(Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
NHGRI_mPanPan1-v2 | 3 | 143,555,555 - 143,628,303 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 4 | 143,920,547 - 143,993,278 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 4 | 138,022,499 - 138,094,804 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 4 | 149,681,583 - 149,732,163 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 4 | 149,681,583 - 149,753,557 (+) | Ensembl | panpan1.1 | | panPan2 | |
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C15H4orf51
(Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 15 | 44,255,853 - 44,282,782 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 15 | 44,646,899 - 44,748,294 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 15 | 44,933,923 - 45,023,000 (+) | NCBI | | ROS_Cfam_1.0 | | | UMICH_Zoey_3.1 | 15 | 44,196,384 - 44,296,371 (+) | NCBI | | UMICH_Zoey_3.1 | | | UU_Cfam_GSD_1.0 | 15 | 44,548,031 - 44,648,475 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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CUNH4orf51
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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CUNH4orf51
(Chlorocebus sabaeus - green monkey) |
| Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 7 | 92,241,869 - 92,313,423 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 7 | 92,242,439 - 92,283,850 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666037 | 71,892,258 - 71,966,137 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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CUNH4orf51
(Heterocephalus glaber - naked mole-rat) |
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Expression
Sequence
| RefSeq Acc Id: |
ENSCLAT00000007446 ⟹ ENSCLAP00000007329 |
| Type: |
CODING |
| Position: |
| Chinchilla Assembly | Chr | Position (strand) | Source |
|---|
ChiLan1.0 Ensembl | NW_004955428 | 1,500,090 - 1,529,078 (+) | Ensembl |
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| RefSeq Acc Id: |
ENSCLAT00000007447 ⟹ ENSCLAP00000007330 |
| Type: |
CODING |
| Position: |
| Chinchilla Assembly | Chr | Position (strand) | Source |
|---|
ChiLan1.0 Ensembl | NW_004955428 | 1,502,000 - 1,529,078 (+) | Ensembl |
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| RefSeq Acc Id: |
ENSCLAT00000007448 ⟹ ENSCLAP00000007331 |
| Type: |
CODING |
| Position: |
| Chinchilla Assembly | Chr | Position (strand) | Source |
|---|
ChiLan1.0 Ensembl | NW_004955428 | 1,502,586 - 1,529,078 (+) | Ensembl |
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| RefSeq Acc Id: |
XM_005386650 ⟹ XP_005386707 |
| Type: |
CODING |
| Position: |
| Chinchilla Assembly | Chr | Position (strand) | Source |
|---|
ChiLan1.0 | NW_004955428 | 1,504,953 - 1,543,635 (+) | NCBI |
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| Sequence: |
TTCAGGGGAAATAGACGCTCGGCACTGTCCTTCAATCTCTTGTTCCCACTTCTTAGAACCACCA
TCACTGAGTCATTAATTTCCTTATGATAGCAGTAGTAGACAAATAATTTTACCAAATGCGTTCT
TACCATAATACAAAGCAGTATATTCTATAGAGCACCAACCAGAAGTTATTCCACTTACCAATAT
GCTTGTTCACCATTTGTGTGTGGAGGGGGGAGGGTAGTATTTGTGGAATTTTGTGATCTGTTGC
TTGGCAACGGTACCTGAGAGAATTAAGCTTCTGCACTCTGACCTGTCAGAGTTCCGAAGCTTGG
TGAGCCCTGCTGATGGCTTCCTGCTCATAGGAGGAAATGAGTTCTTCATTATGCAGAGGGTTTG
AAAATTTGTACCTCACAGCCTACCATCCAGCGCTATGTCACAATTCTTGTTCTTGACTCCACAA
GTTCTTCTCCCCTTCAGCCCTCTTACTTCTCAAGAATTTGATCAGATCAGACACAAGGCCAGAG
CATCTTGGCAGGATGAGACACGGTGGTCCGATTCTTCGATGACAACCTACTCAGGCAGTTACCG
AGAGAAACAACTGGATGAGTTCGCCCGCAGTCGACTCTCTTTCGGGGCGGCAGGACAGCATAAG
CCTGGGTGTAAACGGACACTATTGCTGAATAACTGTACCCACAATCCTCTACTCTATGGAGCTG
GTACCCAAGATTCTAACGATGTCAAAGGCCGATTCCCTGATATAACCCAGACCTTGAAAAATCC
ACTTGATGTCAAGCACAAAGTGGCACACCAGGCTTGGTATTCTGCTGATTTTCCTCCTGCACTT
CCAAATTACAGAAAATCATGTGCGAGATCTAAGCAGCCAGCCCTGCAGACCCGGATGAACCACA
AACATGTGGGGAAAAGCTTCCCGAAGCATTTTCAGGGACAATGGGATTCTGTGAGTAAAGTCGG
TTCATCTGATGACTCAGACGCTGATCAATACTGCGATTACGGTCGGGGAGGACTGTTATCCTTA
CTTTCCTGACTTAGAAACGAAGCCACAGGCTGGAGGCCCAGAATGCGCGATAAAGGACTCCGAG
ATTCAACCCTAAAGAAGAAATTATGAGCAGATCTTCTACTTCATAAGGAAGAATAAGTCTTGAT
TAATAACTCGAGACTACCTAGACTTGGATAGGGAAGAAACATGGATCCCTCAGCTCCTGGGAGT
TACCACACTTACCTCGGGCCTTCCTTTCTGGGCATTTGCTTGTTTGGTTAATTGTTACTACTCA
CAAAATAAACCCCATTTTGTGTGGGACTCTTTCATTCTGAAGGAA
hide sequence
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| RefSeq Acc Id: |
XM_005386651 ⟹ XP_005386708 |
| Type: |
CODING |
| Position: |
| Chinchilla Assembly | Chr | Position (strand) | Source |
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ChiLan1.0 | NW_004955428 | 1,505,248 - 1,543,635 (+) | NCBI |
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| Sequence: |
GACCTGTCAGAGTTCCGAAGCTTGGTGAGCCCTGCTGATGGCTTCCTGCTCATAGGAGGAAATG
AGTTCTTCATTATGCAGAGGGTTTGAAAATTTGTACCTCACAGCCTACCATCCAGCGCTATGTC
ACAATTCTTGTTCTTGACTCCACAAGTTCTTCTCCCCTTCAGCCCTCTTACTTCTCAAGAATTT
GATCAGATCAGACACAAGGCCAGAGCATCTTGGCAGGATGAGACACGGTGGTCCGATTCTTCGA
TGACAACCTACTCAGGCAGTTACCGAGAGAAACAACTGGATGAGTTCGCCCGCAGTCGACTCTC
TTTCGGGGCGGCAGGACAGCATAAGCCTGGGTGTAAACGGACACTATTGCTGAATAACTGTACC
CACAATCCTCTACTCTATGGAGCTGGTACCCAAGATTCTAACGATGTCAAAGGCCGATTCCCTG
ATATAACCCAGACCTTGAAAAATCCACTTGATGTCAAGCACAAAGTGGCACACCAGGCTTGGTA
TTCTGCTGATTTTCCTCCTGCACTTCCAAATTACAGAAAATCATGTGCGAGATCTAAGCAGCCA
GCCCTGCAGACCCGGATGAACCACAAACATGTGGGGAAAAGCTTCCCGAAGCATTTTCAGGGAC
AATGGGATTCTGTGAGTAAAGTCGGTTCATCTGATGACTCAGACGCTGATCAATACTGCGATTA
CGGTCGGGGAGGACTGTTATCCTTACTTTCCTGACTTAGAAACGAAGCCACAGGCTGGAGGCCC
AGAATGCGCGATAAAGGACTCCGAGGATTTGCATTTCTGTCTTGCAGATTCAACCCTAAAGAAG
AAATTATGAGCAGATCTTCTACTTCATAAGGAAGAATAAGTCTTGATTAATAACTCGAGACTAC
CTAGACTTGGATAGGGAAGAAACATGGATCCCTCAGCTCCTGGGAGTTACCACACTTACCTCGG
GCCTTCCTTTCTGGGCATTTGCTTGTTTGGTTAATTGTTACTACTCACAAAATAAACCCCATTT
TGTGTGGGACTCTTTCATTCTGAAGGAA
hide sequence
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| RefSeq Acc Id: |
XM_005386652 ⟹ XP_005386709 |
| Type: |
CODING |
| Position: |
| Chinchilla Assembly | Chr | Position (strand) | Source |
|---|
ChiLan1.0 | NW_004955428 | 1,503,025 - 1,543,635 (+) | NCBI |
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| Sequence: |
TTATAGATACTTGTGATGCCAAGCCCTCTTACTTCTCAAGAATTTGATCAGATCAGACACAAGG
CCAGAGCATCTTGGCAGGATGAGACACGGTGGTCCGATTCTTCGATGACAACCTACTCAGGCAG
TTACCGAGAGAAACAACTGGATGAGTTCGCCCGCAGTCGACTCTCTTTCGGGGCGGCAGGACAG
CATAAGCCTGGGTGTAAACGGACACTATTGCTGAATAACTGTACCCACAATCCTCTACTCTATG
GAGCTGGTACCCAAGATTCTAACGATGTCAAAGGCCGATTCCCTGATATAACCCAGACCTTGAA
AAATCCACTTGATGTCAAGCACAAAGTGGCACACCAGGCTTGGTATTCTGCTGATTTTCCTCCT
GCACTTCCAAATTACAGAAAATCATGTGCGAGATCTAAGCAGCCAGCCCTGCAGACCCGGATGA
ACCACAAACATGTGGGGAAAAGCTTCCCGAAGCATTTTCAGGGACAATGGGATTCTGTGAGTAA
AGTCGGTTCATCTGATGACTCAGACGCTGATCAATACTGCGATTACGGTCGGGGAGGACTGTTA
TCCTTACTTTCCTGACTTAGAAACGAAGCCACAGGCTGGAGGCCCAGAATGCGCGATAAAGGAC
TCCGAGATTCAACCCTAAAGAAGAAATTATGAGCAGATCTTCTACTTCATAAGGAAGAATAAGT
CTTGATTAATAACTCGAGACTACCTAGACTTGGATAGGGAAGAAACATGGATCCCTCAGCTCCT
GGGAGTTACCACACTTACCTCGGGCCTTCCTTTCTGGGCATTTGCTTGTTTGGTTAATTGTTAC
TACTCACAAAATAAACCCCATTTTGTGTGGGACTCTTTCATTCTGAAGGAA
hide sequence
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| RefSeq Acc Id: |
XP_005386709 ⟸ XM_005386652 |
| - Peptide Label: |
isoform X2 |
| - UniProtKB: |
A0A8C2YLF7 (UniProtKB/TrEMBL), A0A8C2UXT5 (UniProtKB/TrEMBL) |
| - Sequence: |
MPSPLTSQEFDQIRHKARASWQDETRWSDSSMTTYSGSYREKQLDEFARSRLSFGAAGQHKPGC
KRTLLLNNCTHNPLLYGAGTQDSNDVKGRFPDITQTLKNPLDVKHKVAHQAWYSADFPPALPNY
RKSCARSKQPALQTRMNHKHVGKSFPKHFQGQWDSVSKVGSSDDSDADQYCDYGRGGLLSLLS
hide sequence
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| RefSeq Acc Id: |
XP_005386707 ⟸ XM_005386650 |
| - Peptide Label: |
isoform X1 |
| - UniProtKB: |
A0A8C2UXT5 (UniProtKB/TrEMBL) |
| - Sequence: |
MSQFLFLTPQVLLPFSPLTSQEFDQIRHKARASWQDETRWSDSSMTTYSGSYREKQLDEFARSR
LSFGAAGQHKPGCKRTLLLNNCTHNPLLYGAGTQDSNDVKGRFPDITQTLKNPLDVKHKVAHQA
WYSADFPPALPNYRKSCARSKQPALQTRMNHKHVGKSFPKHFQGQWDSVSKVGSSDDSDADQYC
DYGRGGLLSLLS
hide sequence
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| RefSeq Acc Id: |
XP_005386708 ⟸ XM_005386651 |
| - Peptide Label: |
isoform X1 |
| - UniProtKB: |
A0A8C2UXT5 (UniProtKB/TrEMBL) |
| - Sequence: |
MSQFLFLTPQVLLPFSPLTSQEFDQIRHKARASWQDETRWSDSSMTTYSGSYREKQLDEFARSR
LSFGAAGQHKPGCKRTLLLNNCTHNPLLYGAGTQDSNDVKGRFPDITQTLKNPLDVKHKVAHQA
WYSADFPPALPNYRKSCARSKQPALQTRMNHKHVGKSFPKHFQGQWDSVSKVGSSDDSDADQYC
DYGRGGLLSLLS
hide sequence
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| RefSeq Acc Id: |
ENSCLAP00000007331 ⟸ ENSCLAT00000007448 |
| RefSeq Acc Id: |
ENSCLAP00000007330 ⟸ ENSCLAT00000007447 |
| RefSeq Acc Id: |
ENSCLAP00000007329 ⟸ ENSCLAT00000007446 |
Additional Information
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