Nrg3 (neuregulin 3) - Rat Genome Database

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Gene: Nrg3 (neuregulin 3) Chinchilla lanigera
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Symbol: Nrg3
Name: neuregulin 3
RGD ID: 8969656
Description: ENCODES a protein that exhibits chemorepellent activity (ortholog); receptor ligand activity (ortholog); INVOLVED IN chemorepulsion involved in interneuron migration from the subpallium to the cortex (ortholog); ERBB4 signaling pathway (ortholog); ERBB4-ERBB4 signaling pathway (ortholog); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; ASSOCIATED WITH Hirschsprung's disease (ortholog); schizophrenia (ortholog); FOUND IN extracellular space (ortholog); glutamatergic synapse (ortholog); synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: pro-neuregulin-3, membrane-bound isoform
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555101,615,316 - 2,618,617 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555101,615,316 - 2,620,031 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Nrg3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555101,615,316 - 2,618,617 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555101,615,316 - 2,620,031 (+)NCBIChiLan1.0ChiLan1.0
NRG3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381081,875,194 - 82,987,179 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1081,875,194 - 82,987,179 (+)EnsemblGRCh38hg38GRCh38
GRCh371083,634,950 - 84,746,935 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361083,625,077 - 84,735,341 (+)NCBINCBI36Build 36hg18NCBI36
Celera1077,630,757 - 78,742,147 (+)NCBICelera
Cytogenetic Map10q23.1NCBI
HuRef1077,483,814 - 78,594,633 (+)NCBIHuRef
CHM1_11083,917,602 - 85,028,760 (+)NCBICHM1_1
T2T-CHM13v2.01082,749,017 - 83,860,555 (+)NCBIT2T-CHM13v2.0
Nrg3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391438,086,093 - 39,195,045 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1438,090,909 - 39,195,045 (-)EnsemblGRCm39 Ensembl
GRCm381438,365,102 - 39,473,235 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1438,368,952 - 39,473,088 (-)EnsemblGRCm38mm10GRCm38
MGSCv371439,182,137 - 40,286,376 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361437,282,204 - 38,384,967 (-)NCBIMGSCv36mm8
Celera1434,560,237 - 35,661,300 (-)NCBICelera
Cytogenetic Map14BNCBI
Nrg3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81614,256,540 - 15,374,107 (-)NCBIGRCr8
mRatBN7.21614,229,270 - 15,352,505 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1614,235,157 - 15,352,368 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01615,763,031 - 16,932,208 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1615,764,632 - 15,798,974 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01615,661,430 - 16,817,319 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41614,679,903 - 15,817,157 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1614,466,369 - 15,581,462 (-)NCBICelera
Cytogenetic Map16p14NCBI
NRG3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2893,833,755 - 94,981,643 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11093,839,076 - 94,986,963 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01078,267,693 - 79,384,895 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11081,862,024 - 82,974,743 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1081,862,036 - 82,973,334 (+)Ensemblpanpan1.1panPan2
NRG3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1430,515,845 - 31,557,598 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl430,515,890 - 31,556,152 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha430,570,501 - 31,546,936 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0430,834,334 - 31,875,634 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl430,834,349 - 31,874,016 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1430,699,630 - 31,739,836 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0430,896,586 - 31,931,272 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0431,385,545 - 32,426,952 (+)NCBIUU_Cfam_GSD_1.0
LOC101957192
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721349,019,288 - 50,047,975 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367161,362,574 - 2,391,432 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NRG3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1483,317,019 - 84,402,943 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11483,316,962 - 84,405,347 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21490,842,758 - 91,108,804 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NRG3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1948,846,287 - 49,957,238 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660489,110,091 - 10,240,887 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nrg3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248414,219,084 - 5,285,240 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248414,213,089 - 5,285,255 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000001531   ⟹   ENSCLAP00000001488
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555101,615,316 - 2,618,617 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000001532   ⟹   ENSCLAP00000001489
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555101,615,316 - 2,618,617 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000001533   ⟹   ENSCLAP00000001490
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555102,509,628 - 2,618,617 (+)Ensembl
RefSeq Acc Id: XM_013506309   ⟹   XP_013361763
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555101,615,316 - 2,620,031 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013361763 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000001488
  ENSCLAP00000001488.1
  ENSCLAP00000001489.1
  ENSCLAP00000001490.1
RefSeq Acc Id: XP_013361763   ⟸   XM_013506309
- UniProtKB: A0A8C2UPY7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000001489   ⟸   ENSCLAT00000001532
Ensembl Acc Id: ENSCLAP00000001488   ⟸   ENSCLAT00000001531
Ensembl Acc Id: ENSCLAP00000001490   ⟸   ENSCLAT00000001533
Protein Domains
EGF-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000001117 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000001531 ENTREZGENE
  ENSCLAT00000001531.1 UniProtKB/TrEMBL
  ENSCLAT00000001532.1 UniProtKB/TrEMBL
  ENSCLAT00000001533.1 UniProtKB/TrEMBL
Gene3D-CATH Laminin UniProtKB/TrEMBL
InterPro EGF-like_dom UniProtKB/TrEMBL
  Neuregulin UniProtKB/TrEMBL
NCBI Gene Nrg3 ENTREZGENE
PANTHER PRO-NEUREGULIN-3, MEMBRANE-BOUND ISOFORM UniProtKB/TrEMBL
  PTHR11100 UniProtKB/TrEMBL
PROSITE EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
UniProt A0A8C2UJK0_CHILA UniProtKB/TrEMBL
  A0A8C2UMB2_CHILA UniProtKB/TrEMBL
  A0A8C2UPY7 ENTREZGENE, UniProtKB/TrEMBL