Atf6b (activating transcription factor 6 beta) - Rat Genome Database

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Gene: Atf6b (activating transcription factor 6 beta) Chinchilla lanigera
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Symbol: Atf6b
Name: activating transcription factor 6 beta
RGD ID: 8969352
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN negative regulation of ATF6-mediated unfolded protein response (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); positive regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); nucleus (ortholog); protein-DNA complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: cyclic AMP-dependent transcription factor ATF-6 beta
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955437582,431 - 591,810 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955437582,083 - 592,026 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References


Genomics

Comparative Map Data
Atf6b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955437582,431 - 591,810 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955437582,083 - 592,026 (-)NCBIChiLan1.0ChiLan1.0
ATF6B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl632,115,264 - 32,128,253 (-)EnsemblGRCh38hg38GRCh38
GRCh38632,115,264 - 32,128,246 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37632,083,041 - 32,096,023 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36632,191,016 - 32,203,995 (-)NCBINCBI36hg18NCBI36
Build 34632,191,024 - 32,203,995NCBI
Celera633,650,086 - 33,663,069 (-)NCBI
Cytogenetic Map6p21.32NCBI
HuRef631,837,168 - 31,850,138 (-)NCBIHuRef
CHM1_1632,085,255 - 32,098,227 (-)NCBICHM1_1
Atf6b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391734,866,120 - 34,874,048 (+)NCBIGRCm39mm39
GRCm39 Ensembl1734,866,120 - 34,874,048 (+)Ensembl
GRCm381734,647,146 - 34,655,074 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1734,647,146 - 34,655,074 (+)EnsemblGRCm38mm10GRCm38
MGSCv371734,784,125 - 34,792,017 (+)NCBIGRCm37mm9NCBIm37
MGSCv361734,255,202 - 34,263,128 (+)NCBImm8
Celera1737,742,351 - 37,750,243 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.22NCBI
Atf6b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2204,090,921 - 4,098,920 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl204,090,921 - 4,098,894 (-)Ensembl
Rnor_6.0204,414,283 - 4,422,283 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl204,414,276 - 4,422,283 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0206,493,639 - 6,501,639 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4204,192,185 - 4,200,036 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1204,192,411 - 4,200,335 (-)NCBI
Celera203,931,428 - 3,939,279 (+)NCBICelera
Cytogenetic Map20p12NCBI
ATF6B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1632,643,124 - 32,655,617 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl632,643,124 - 32,655,617 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0631,762,161 - 31,775,136 (-)NCBIMhudiblu_PPA_v0panPan3
ATF6B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1121,515,186 - 1,525,165 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl121,515,503 - 1,525,110 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha121,649,820 - 1,659,539 (-)NCBI
ROS_Cfam_1.0121,648,775 - 1,664,022 (-)NCBI
UMICH_Zoey_3.1121,517,328 - 1,527,049 (-)NCBI
UNSW_CanFamBas_1.0121,582,585 - 1,592,516 (-)NCBI
UU_Cfam_GSD_1.0121,649,158 - 1,658,950 (-)NCBI
Atf6b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494636,073,980 - 36,085,314 (-)NCBI
SpeTri2.0NW_0049367271,476,061 - 1,487,353 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATF6B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl724,153,572 - 24,171,840 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1724,153,551 - 24,171,743 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2727,974,356 - 27,992,535 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATF6B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11739,901,226 - 39,913,702 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1739,901,226 - 39,914,142 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604432,017,693 - 32,030,453 (-)NCBIVero_WHO_p1.0
Atf6b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475424,185,203 - 24,194,351 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000010917   ⟹   ENSCLAP00000010784
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955437582,431 - 591,810 (-)Ensembl
RefSeq Acc Id: XM_005389410   ⟹   XP_005389467
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955437582,083 - 591,868 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516900   ⟹   XP_013372354
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955437582,083 - 592,026 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005389467 (Get FASTA)   NCBI Sequence Viewer  
  XP_013372354 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005389467   ⟸   XM_005389410
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013372354   ⟸   XM_013516900
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000010784   ⟸   ENSCLAT00000010917


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007441 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000010784 ENTREZGENE
Ensembl Transcript ENSCLAT00000010917 ENTREZGENE
NCBI Gene LOC102008979 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Atf6b  activating transcription factor 6 beta  LOC102008979  cyclic AMP-dependent transcription factor ATF-6 beta-like  Symbol and/or name change 5135510 APPROVED